hypothetical protein N866_13520, maker-scaffold28_size608977-snap-gene-0.11 (gene) Tigriopus kingsejongensis

Overview
Namehypothetical protein N866_13520
Unique Namemaker-scaffold28_size608977-snap-gene-0.11
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of hypothetical protein N866_13520 vs. L. salmonis genes
Match: EMLSAG00000010543 (supercontig:LSalAtl2s:LSalAtl2s6:676594:717966:-1 gene:EMLSAG00000010543 transcript:EMLSAT00000010543 description:"maker-LSalAtl2s6-snap-gene-7.6")

HSP 1 Score: 143.665 bits (361), Expect = 7.799e-40
Identity = 101/208 (48.56%), Postives = 122/208 (58.65%), Query Frame = 0 
Query:   18 HHVQRELFPPYPYQNEDNLTYGTGTNHNLNGLPARPQYNQFAFNGHGMRSTSMKPMLAPLEEVDYVSRDQIEQNGTDFGSKADPDLHRQLLNIPMTSEG--SHDSHNDSGYSTRLGFSAGPSPSLSGSRPESSDGDHPQYHNSQPQGSVALLDPMAISLMPPEFE------LPSDDP-RLQDVQQQLQMSRLAEN-DSSKFAPKGSLV 215
            ++VQR+LFPP   Q   + T  +  N      P  PQ   F  N              PL+E DYV  ++I       G K   D HRQLLNIPMTS+G  SHDSHNDSGYSTRLGFSAGPSPSLSGSRPES++GDHP Y N+   GS  LLDPMAI+++PPE E        S+ P R+ ++ Q+L    L    +  K APKGSLV
Sbjct:  703 NNVQRQLFPP---QQAPSFTNNSTFNR-----PVAPQVVSFNSN-----------YPTPLDEDDYVGHNEI------VGEK--EDFHRQLLNIPMTSDGGGSHDSHNDSGYSTRLGFSAGPSPSLSGSRPESNEGDHPHYQNT--NGSHLLLDPMAINMIPPEMEQFNHPRQNSNGPYRIHEINQRLHNVDLRSGCEIQKQAPKGSLV 881
[Close]
BLAST of hypothetical protein N866_13520 vs. nr
Match: gi|1325329000|ref|XP_023346362.1| (uncharacterized protein LOC111715285 [Eurytemora affinis])

HSP 1 Score: 85.1149 bits (209), Expect = 1.726e-15
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 0 
Query:   72 PMLAPLEEVDYVSRDQIEQNGTDFGSKADPDLHRQLLNIPMTSEG-SHDSHNDSGYSTRLGFSAGPSPSLSGSRPESSDGD 151
            P+L P++E +Y S +Q E+         + DLHRQLLN+P+ S+G SHDSHNDSGYSTR G SAGPSPSLSGSR  S+DGD
Sbjct:  706 PLLPPVDEDEY-SGEQDEEK--------EQDLHRQLLNLPLHSDGGSHDSHNDSGYSTRFGASAGPSPSLSGSRAGSTDGD 777
The following BLAST results are available for this feature:
BLAST of hypothetical protein N866_13520 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000105437.799e-4048.56supercontig:LSalAtl2s:LSalAtl2s6:676594:717966:-1 ... [more]
back to top
BLAST of hypothetical protein N866_13520 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of hypothetical protein N866_13520 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1325329000|ref|XP_023346362.1|1.726e-1560.49uncharacterized protein LOC111715285 [Eurytemora a... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold28_size608977supercontigscaffold28_size608977:64730..65580 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold28_size608977-snap-gene-0.11-mRNA-1maker-scaffold28_size608977-snap-gene-0.11-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold28_size608977:64730..65580-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold28_size608977-snap-gene-0.11 ID=maker-scaffold28_size608977-snap-gene-0.11|Name=hypothetical protein N866_13520|organism=Tigriopus kingsejongensis|type=gene|length=851bp|location=Sequence derived from alignment at scaffold28_size608977:64730..65580- (Tigriopus kingsejongensis)
ATGGCCTACGATCGAAGGCCGGCCTTTCCCCTGCCCAAGGACGAGCTATC
CCATCATGTTCAGCGAGAGCTCTTCCCTCCCTATCCGTATCAAAATGAGG
ATAACCTCACCTATGGGACGGGGACGAACCACAACTTGAATGGCTTACCC
GCCAGACCCCAGTACAACCAATTCGCCTTCAATGGGCATGGGATGCGATC
AACCTCGATGAAACCCATGTGTACGTACTAGCGAGCCCCTCAATTGAGAG
GGCCTCTGGATGACAGATCCCCGGCTTCTTTTGCAGTGGCCCCCTTGGAG
GAGGTGGATTATGTGAGCCGGGACCAGATTGAGCAGAATGGAACGGACTT
TGGCTCCAAAGCCGATCCGGATCTTCACCGCCAGCTCCTGAACATCCCCA
TGACCTCAGAGGGGTCTCACGACTCCCACAACGACTCGGGCTATTCGACG
AGGCTGGGATTTAGTGCTGGCCCGTCCCCCTCTCTCTCTGGTAAGTGGGC
TTCGTCAAGGCTGGATTATTGCTCAATGTGACCTGTATAACTTGGGTCCA
CATTTTCTTGCACACTCGTGGCAGGCGATTGGAGATGACCTGGAGGAGTC
TCAATCTCACACAAATGTCTATTCCAGGGAGTCGACCCGAGAGCAGCGAT
GGTGATCATCCCCAATACCATAATTCCCAACCTCAGGGAAGTGTGGCCCT
TTTGGACCCAATGGCCATTAGTTTGATGCCCCCGGAGTTCGAGCTGCCGT
CCGACGATCCTCGACTTCAGGATGTTCAACAACAATTGCAAATGAGCCGC
CTTGCCGAGAATGACAGCTCTAAGTTTGCTCCCAAAGGCAGCCTTGTATA
A
back to top
Synonyms
The feature 'hypothetical protein N866_13520' has the following synonyms
Synonym
Tk05733
Add to Basket