general transcription factor iih subunit 3, maker-scaffold297_size217559-snap-gene-0.27 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of general transcription factor iih subunit 3 vs. L. salmonis genes
Match: EMLSAG00000000259 (supercontig:LSalAtl2s:LSalAtl2s103:1015218:1016337:1 gene:EMLSAG00000000259 transcript:EMLSAT00000000259 description:"snap_masked-LSalAtl2s103-processed-gene-10.11") HSP 1 Score: 196.052 bits (497), Expect = 2.924e-62 Identity = 108/260 (41.54%), Postives = 146/260 (56.15%), Query Frame = 0 Query: 17 GVLAEPQGQLLVLVLDMNPNQVFFTKQPESLFHWLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYPSQTDQDESDNLRQRDGQFEGFYQVEATIRKQAAHILRAETQPTAPVHAESLLSGALSMALSYIHRRRQELSVAESLTSRVLVMSASGDTATQYMNYMNVFFSAQKMGVVIDTCMLEKDAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSV 276 G + + QLL++V+DMNPNQ F P +L LD+ + AN+HLMLHP+NA+A + S + FLYP D + +RQ DGQ+E F VE T+R + +L++E ++ +S LSG+L+MALSYI+RRR+E L++R+L QGADITGG+Y V ALLQFL WIFLP +R L LPS ++VD+RAACFCHR L+DIGFVCS+ Sbjct: 8 GSGGDSKAQLLIIVMDMNPNQKLFLHXPTALTSVLDNLLCFANAHLMLHPSNALATLGSMASGSYFLYPPPDDPAADNEIRQLDGQYELFTLVETTVRSKFIELLQSEAGISS--QTDSPLSGSLAMALSYINRRRKE---NMDLSARIL------------------------------------------QGADITGGMYFNVPDNA--ALLQFLLWIFLPSAEMRPQLGLPSANKVDFRAACFCHRQLVDIGFVCSI 218
BLAST of general transcription factor iih subunit 3 vs. SwissProt
Match: gi|50403772|sp|Q13889.2|TF2H3_HUMAN (RecName: Full=General transcription factor IIH subunit 3; AltName: Full=Basic transcription factor 2 34 kDa subunit; Short=BTF2 p34; AltName: Full=General transcription factor IIH polypeptide 3; AltName: Full=TFIIH basal transcription factor complex p34 subunit) HSP 1 Score: 258.07 bits (658), Expect = 7.532e-84 Identity = 136/296 (45.95%), Postives = 184/296 (62.16%), Query Frame = 0 Query: 21 EPQGQLLVLVLDMNPNQVFFTKQ--PESLF---HWLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYPSQTDQ-----------DESDNLRQRDGQFEGFYQVEATIRKQAAHILRAETQPTAPVHAESLLSGALSMALSYIHRRRQELSVAESLTSRVLVMSASGDTATQYMNYMNVFFSAQKMGVVIDTCMLEKDAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSVCLSIFCKFSPICTTCHTVFKTPGP 300 E + LLV+V+D NP +++ KQ ES F +D+ + L NSHL ++ +N +A IASH Q FLYP + + E + +DG++E I ++ ++ H E+LL+G+L+ AL YIHR +E+ + + SR+LV+ A+ D+A QYMN+MNV F+AQK ++ID C+L+ D+GLLQQ DITGG+Y KV P+LLQ+L W+FLPD R L LP VDYRAACFCHRNLI+IG+VCSVCLSIFC FSPICTTC T FK P Sbjct: 5 EDELNLLVIVVDANP--IWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSD--IKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVP--QMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLP 294
BLAST of general transcription factor iih subunit 3 vs. SwissProt
Match: gi|122131719|sp|Q05B56.1|TF2H3_BOVIN (RecName: Full=General transcription factor IIH subunit 3; AltName: Full=General transcription factor IIH polypeptide 3) HSP 1 Score: 256.914 bits (655), Expect = 2.354e-83 Identity = 135/297 (45.45%), Postives = 183/297 (61.62%), Query Frame = 0 Query: 21 EPQGQLLVLVLDMNPNQVFFTKQ--PESLF---HWLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYPSQTDQ------------DESDNLRQRDGQFEGFYQVEATIRKQAAHILRAETQPTAPVHAESLLSGALSMALSYIHRRRQELSVAESLTSRVLVMSASGDTATQYMNYMNVFFSAQKMGVVIDTCMLEKDAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSVCLSIFCKFSPICTTCHTVFKTPGP 300 E + LLV+++D NP +++ KQ ES F +D+ + L NSHL ++ +N +A IASH Q FLYP + + E +DG++E I ++ ++ H E+LL+G+L+ AL YIHR +E+ + + SR+LV+ A+ D+A QYMN+MNV F+AQK ++ID C+L+ D+GLLQQ DITGG+Y KV P+LLQ+L W+FLPD R L LP VDYRAACFCHRNLI+IG+VCSVCLSIFC FSPICTTC T FK P Sbjct: 5 EDELNLLVIIVDTNP--IWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPSSEFTPSGSKDGKYELLTAANEVIAEEIKDLMTKSD--IEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVP--QMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLP 295
BLAST of general transcription factor iih subunit 3 vs. SwissProt
Match: gi|81888006|sp|Q561R7.1|TF2H3_RAT (RecName: Full=General transcription factor IIH subunit 3; AltName: Full=General transcription factor IIH polypeptide 3) HSP 1 Score: 252.677 bits (644), Expect = 1.008e-81 Identity = 134/297 (45.12%), Postives = 185/297 (62.29%), Query Frame = 0 Query: 21 EPQGQLLVLVLDMNPNQVFFTKQ--PESLF---HWLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYPSQTDQ------DESDNL------RQRDGQFEGFYQVEATIRKQAAHILRAETQPTAPVHAESLLSGALSMALSYIHRRRQELSVAESLTSRVLVMSASGDTATQYMNYMNVFFSAQKMGVVIDTCMLEKDAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSVCLSIFCKFSPICTTCHTVFKTPGP 300 E + LLV+++D NP +++ KQ ES F +D+ + LAN+HL ++ +N +A IASH Q FLYP + + D + L +DG++E I ++ ++ H E+LL+G+L+ AL YIHR + + + + SR+LV+ A+ D+A QYMN+MNV F+AQK ++ID C+L+ D+GLLQQ DITGG+Y KV P+LLQ+L W+FLPD R L LP VDYRAACFCHR+LI+IG+VCSVCLSIFC FSPICTTC T FK P Sbjct: 5 EDELNLLVIIVDTNP--IWWGKQALKESQFTLSKCMDAVMVLANAHLFMNRSNQLAVIASHIQESRFLYPGKNGRLGDFFGDPGNALPDCNPSGSKDGKYELLTAANEVIAEEIKDLMTKSD--IKGQHTETLLAGSLAKALCYIHRASKAVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVP--QMPSLLQYLLWVFLPDQDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLP 295
BLAST of general transcription factor iih subunit 3 vs. SwissProt
Match: gi|22654149|sp|Q8VD76.1|TF2H3_MOUSE (RecName: Full=General transcription factor IIH subunit 3; AltName: Full=Basic transcription factor 2 34 kDa subunit; Short=BTF2 p34; AltName: Full=General transcription factor IIH polypeptide 3; AltName: Full=TFIIH basal transcription factor complex p34 subunit) HSP 1 Score: 250.366 bits (638), Expect = 7.674e-81 Identity = 134/297 (45.12%), Postives = 183/297 (61.62%), Query Frame = 0 Query: 21 EPQGQLLVLVLDMNPNQVFFTKQ--PESLF---HWLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYPSQTDQ------DESDNL------RQRDGQFEGFYQVEATIRKQAAHILRAETQPTAPVHAESLLSGALSMALSYIHRRRQELSVAESLTSRVLVMSASGDTATQYMNYMNVFFSAQKMGVVIDTCMLEKDAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSVCLSIFCKFSPICTTCHTVFKTPGP 300 E + LLV+++D NP +++ KQ ES F +D+ + LANSHL ++ +N +A IASH Q LYP + D + L +DG++E I ++ ++ H E+LL+G+L+ AL YIHR + + + + SR+LV+ A+ D+A QYMN+MNV F+AQK ++ID C+L+ D+GLLQQ DITGG+Y KV P+LLQ+L W+FLPD R L LP VDYRAACFCHR+LI+IG+VCSVCLSIFC FSPICTTC T FK P Sbjct: 5 EDELNLLVIIVDTNP--IWWGKQALKESQFTLSKCMDAVMVLANSHLFMNRSNQLAVIASHIQESRLLYPGKNGGLGDFFGDPGNALPDCNPSGSKDGKYELLTVANEVIAEEIKDLMTKSD--IKGQHTETLLAGSLAKALCYIHRVNKAVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKV--PQMPSLLQYLLWVFLPDQDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLP 295
BLAST of general transcription factor iih subunit 3 vs. SwissProt
Match: gi|62901129|sp|O74366.1|TFB4_SCHPO (RecName: Full=General transcription and DNA repair factor IIH subunit tfb4; Short=TFIIH subunit tfb4; AltName: Full=RNA polymerase II transcription factor B subunit 4) HSP 1 Score: 190.66 bits (483), Expect = 1.137e-57 Identity = 105/273 (38.46%), Postives = 156/273 (57.14%), Query Frame = 0 Query: 26 LLVLVLDMNPNQVFFTKQPESLFHWLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYPSQTDQD---ESDNLRQRDGQFEGFYQVEATIRKQAAHILRAETQPTAPVHAESLLSGALSMALSYIHRRRQELSVAESLTSRVLVMSASGDTATQYMNYMNVFFSAQKMGVVIDTCMLEKDAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSVCLSIFCKFSPICTTCHTVF 295 LLV++LD NP + + + L N+HL H +N +A +ASHS +LYPS + E D ++ + + F +V+ + ++ + T V ++++SGALS AL+YI++ + + +L SR+L+ S +GD A QY+ MN F AQK + I+ C +E L+Q AD TGG+Y KVD+ LLQ+L PD LR+ L+ P+ VD+RA CFCH+ ++DIGFVCSVCLSIFC+ C+TCHT F Sbjct: 25 LLVVILDANPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSDKVEYLYPSIAPEQKVAEVDPTKEAN-TYRKFREVDDLVLSGMKRLMSS----TDKVSRKTMISGALSRALAYINQVQNK----NTLRSRILIFSLTGDVALQYIPTMNCIFCAQKKNIPINVCNIEGGTLFLEQAADATGGIYLKVDNPK--GLLQYLMMSLFPDQNLRKHLNTPNQANVDFRATCFCHKKVLDIGFVCSVCLSIFCEPRVHCSTCHTKF 286
BLAST of general transcription factor iih subunit 3 vs. SwissProt
Match: gi|75155791|sp|Q8LF41.1|TFB4_ARATH (RecName: Full=General transcription and DNA repair factor IIH subunit TFB4; Short=AtTFB4; Short=TFIIH subunit TFB4; AltName: Full=RNA polymerase II transcription factor B subunit 4) HSP 1 Score: 148.288 bits (373), Expect = 2.822e-41 Identity = 99/293 (33.79%), Postives = 148/293 (50.51%), Query Frame = 0 Query: 36 NQVFFTKQPESLFHWLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYPSQTDQDESDNLRQRDGQFE----GFYQVEATIRKQAAHILRAETQPTAPVHAES-----LLSGALSMALSYIHR--RRQELSVAESLTSRVLVMSASGDTATQYMNYMNVFFSAQKMGVVIDTCMLE-KDAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSVCLSIFCKFSPICTTCHTVF-----KTPGPLPGMKRKAPAT 311 N +F++ + +L ++ N+ L L+ N + IA+ SC ++Y S +L G FE G + ++ K+ + + + + +E LLSG+LSMAL YI R R L R+L + S D QY+ MN FSAQ++ V ID+C + +++ LQQ + ITGGV+ + L Q+LT IF D R + LP VD+RA+CFCH+ ID+G++CSVCLSIFC+ C+TC +VF KRKAP+T Sbjct: 23 NPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDS--------SLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIPSCLLSGSLSMALCYIQRVFRSGHLHPQP----RILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQASYITGGVHHT--PKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRKAPST 301
BLAST of general transcription factor iih subunit 3 vs. SwissProt
Match: gi|62901135|sp|Q12004.1|TFB4_YEAST (RecName: Full=General transcription and DNA repair factor IIH subunit TFB4; Short=TFIIH subunit TFB4; AltName: Full=RNA polymerase II transcription factor B 34 kDa subunit; AltName: Full=RNA polymerase II transcription factor B p34 subunit; AltName: Full=RNA polymerase II transcription factor B subunit 4) HSP 1 Score: 136.346 bits (342), Expect = 2.222e-36 Identity = 93/299 (31.10%), Postives = 148/299 (49.50%), Query Frame = 0 Query: 19 LAEPQGQLLVLVLDMNPNQVFFTKQPE-----SLFHWLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYPSQT---DQDESDNLRQRD------GQFEGFYQVEATIRKQAAHILRAETQPTAPVHAESLLSGALSMALSYIHRRRQELSVAESLTSRVLVMS----ASGDTATQYMNYMNVFFSAQKMGVVIDTCML--EKDAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSVCLSIFCKFSP--ICTTCHTVF 295 + E LL +++++ P +++ T E S+ L++ I N+HL + N +A IA++SQ +LYP T ES+N + D + F V+ T+ ++ + E + S L+GA+S L+Y++R +E SV SL SR+LV++ +S D QY+ MN FSA KM ID + K++ LQQ D T GVY V+S L+Q+L D LR + P+ VD+R +C+ ++ +GF+CSVCL + P C C + F Sbjct: 18 VTEESPSLLTVIIEIAP-KLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYKLFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKE-SVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTE--GLIQYLATAMFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAVGFICSVCLCVLSIIPPGNKCPACDSQF 312
BLAST of general transcription factor iih subunit 3 vs. SwissProt
Match: gi|62901344|sp|Q75B93.1|TFB4_ASHGO (RecName: Full=General transcription and DNA repair factor IIH subunit TFB4; Short=TFIIH subunit TFB4; AltName: Full=RNA polymerase II transcription factor B subunit 4) HSP 1 Score: 135.191 bits (339), Expect = 6.802e-36 Identity = 96/299 (32.11%), Postives = 145/299 (48.49%), Query Frame = 0 Query: 19 LAEPQGQLLVLVLDMNPN-QVFFTKQ---PESLFHWLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYPSQTDQDESDNLRQRDGQ-------FEGFYQVEATIRKQAAHILRAET---QPTAPVHAESLLSGALSMALSYIHRRRQELSVAESLTSRVLVM----SASGDTATQYMNYMNVFFSAQKMGVVIDTCMLE--KDAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSVCLSIFCKFSP--ICTTCHTVF 295 L E LL LV+D NP F ++ L L S I N+HL + +N ++ IA+ S+ +LYP D++ S ++ + + + GF V+ + ++ + + E+ + P S LSGA+S L+YI+R E SL SR+LV+ SAS D QY+ MN FSA KM ID + K++ LQQ D T G Y V + L+Q+L+ D LR+ + P+ VD+R +C+ ++ IGFVCSVCL + P C C + F Sbjct: 18 LVEETPSLLTLVIDTNPKLWAEFDREVGKKGQLMQVLKSTIVFLNAHLSFNNSNQVSVIAACSRGIKYLYPQADDKEGSTKKKKSEDRSIINRNMYRGFRNVDEAVVEELYRVFQQESKQLEDGVPQPFRSTLSGAMSAGLTYINRITHETE-GVSLKSRLLVITCGSSASKDEVFQYIPIMNCIFSATKMKCPIDVVKVGGVKESTFLQQATDATNGNYLHVANTD--GLIQYLSTAMFIDPSLRQWVVKPNQSSVDFRTSCYLTGKVVAIGFVCSVCLCVLSIIPPGNKCPACDSEF 313
BLAST of general transcription factor iih subunit 3 vs. SwissProt
Match: gi|74861043|sp|Q86IB5.1|TF2H3_DICDI (RecName: Full=General transcription factor IIH subunit 3; AltName: Full=TFIIH basal transcription factor complex subunit 3) HSP 1 Score: 134.035 bits (336), Expect = 2.995e-35 Identity = 90/262 (34.35%), Postives = 146/262 (55.73%), Query Frame = 0 Query: 50 WLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYP-SQTD--------------QDESDNLRQRDGQFEGFYQVEATIRKQAAHILRAETQPTAPVHAESLLSGALSMALSYIHRRRQELSVAESLTSRVLVMSASGDTATQYMNYMNVFFSAQKMGVVIDTCML-EKDAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSVCLSIFCKFSPICTTCHTVF 295 +L+ + N++LML+ N +A I S SF++P S D + + L + +G Q+ A ++K I +T + + ++S+AL YI+R ++E ++ R+LV + S D ++QY++ MN FS+QK + +D+C+L + D+ LQQ + +T G+Y K + L Q+L FL DT R++L+ P++ VDYRA+CFCH+ ++DIG+VCSVCLSIFC S C+TC T F Sbjct: 95 FLEHFMVFINAYLMLNQENQLAIICSKIGESSFVFPQSNIDQYQQEQQELEQRQLNENGELLPTPNKTIQG--QILAKLQKLDLEIKHDQTDILSSSFSA-----SMSIALCYINRIKRE---TPTIKPRILVFNISPDVSSQYISVMNCIFSSQKQSIPVDSCILSQSDSTFLQQASHLTSGIYLKPQKQEL--LSQYLLTTFLLDTLSRKSLAYPTLKSVDYRASCFCHKRIVDIGYVCSVCLSIFCGHSSSCSTCGTKF 344
BLAST of general transcription factor iih subunit 3 vs. SwissProt
Match: gi|62901298|sp|Q6CVX9.1|TFB4_KLULA (RecName: Full=General transcription and DNA repair factor IIH subunit TFB4; Short=TFIIH subunit TFB4; AltName: Full=RNA polymerase II transcription factor B subunit 4) HSP 1 Score: 130.954 bits (328), Expect = 2.371e-34 Identity = 87/260 (33.46%), Postives = 132/260 (50.77%), Query Frame = 0 Query: 45 ESLFHWLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYPSQTDQDESDNLRQRDGQFEGFYQVEATIRKQAAHILRAETQ-PTAPVHAESLLSGALSMALSYIHRRRQELSVAESLTSRVLVM----SASGDTATQYMNYMNVFFSAQKMGVVIDTCMLEK--DAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSVCLSIFCKFSP--ICTTCHTVF 295 + L L S + N+HL + N + IA+HS+ +LYPS D S ++ D + GF V+ + +Q + + E + + V +S LSGA+S AL+Y++R +E + SL SR+LV+ S D QY+ MN FSA KM ID + ++ LQQ D T GVY V++ L+Q+L+ D LR + P+ VD+R +CF ++ +GFVCSVCL + P C C + F Sbjct: 56 KQLIEALKSIVVFLNAHLAFNSGNQVCLIAAHSEGMKYLYPS-ADSKPSMSMVSSD-MYRGFRNVDEIVVEQWYRLFKEELEGQESKVSMKSSLSGAMSSALTYVNRILKE-NENTSLRSRLLVITCGTSQGKDEIFQYIPIMNCIFSATKMKCSIDVVKIGGGIESTFLQQATDATSGVYLHVENTR--GLIQYLSTAMFIDPSLRNVIIKPNQGSVDFRTSCFLTGKVVAVGFVCSVCLCVLSVIPPGQKCPACDSPF 310
BLAST of general transcription factor iih subunit 3 vs. nr
Match: gi|972186137|ref|XP_015174593.1| (PREDICTED: general transcription factor IIH subunit 3 [Polistes dominula] >gi|972186139|ref|XP_015174594.1| PREDICTED: general transcription factor IIH subunit 3 [Polistes dominula]) HSP 1 Score: 311.997 bits (798), Expect = 1.133e-102 Identity = 149/282 (52.84%), Postives = 198/282 (70.21%), Query Frame = 0 Query: 21 EPQGQLLVLVLDMNPNQVFFTKQPESLFHWLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYPSQTDQDESDNLRQRDGQFEGFYQVEATIRKQAAHILRAETQPTAPVHAESLLSGALSMALSYIHRRRQELSVAESLTSRVLVMSASGDTATQYMNYMNVFFSAQKMGVVIDTCMLEKDAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSVCLSIFCKFSPICTTCHTVFKTPGPLP 302 E + LL++VLD+NP Q ++ + L LDS I AN+HLM NN +A +A H +FLYPS D+++++RQ DGQ+E F ++E T+R+Q + + + ++ ESL+SGALSMAL YI R Q+ E +SR+LV++AS D+ QYMNYMN+FF+AQKMGV++D C L+++ LLQQG DITGG Y KV LLQ+L W+FLPD+ +R L LP VDYRAACFCH+ L+DIG+VCSVCLSIFCKFSPICTTCHTV+K PGP+P Sbjct: 11 EKEKNLLIIVLDVNPLQRIVKEETKILTQCLDSTIVFANAHLMQASNNQLAVMACHGHGATFLYPS----DKNNDIRQIDGQYEKFTELERTVRQQI-QLFVNQIPLDSSLNGESLISGALSMALCYISRISQDKDGDEKFSSRILVITASNDSTMQYMNYMNIFFTAQKMGVILDVCSLDQELTLLQQGCDITGGNYLKVP--QLNGLLQYLLWVFLPDSSVRSKLVLPPPVEVDYRAACFCHQELVDIGYVCSVCLSIFCKFSPICTTCHTVYKMPGPIP 285
BLAST of general transcription factor iih subunit 3 vs. nr
Match: gi|749732887|ref|XP_011142778.1| (PREDICTED: general transcription factor IIH subunit 3 [Harpegnathos saltator] >gi|307214269|gb|EFN89365.1| General transcription factor IIH subunit 3 [Harpegnathos saltator]) HSP 1 Score: 311.612 bits (797), Expect = 1.164e-102 Identity = 152/282 (53.90%), Postives = 193/282 (68.44%), Query Frame = 0 Query: 21 EPQGQLLVLVLDMNPNQVFFTKQPESLFHWLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYPSQTDQDESDNLRQRDGQFEGFYQVEATIRKQAAHILRAETQPTAPVHAESLLSGALSMALSYIHRRRQELSVAESLTSRVLVMSASGDTATQYMNYMNVFFSAQKMGVVIDTCMLEKDAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSVCLSIFCKFSPICTTCHTVFKTPGPLP 302 E LLV+VLD+NP Q ++ + L LDSAI AN+HLM NN +A +A H S FLYP + + +RQ DGQ+E F VE T+R Q ++ E P++ ESL+SGALSMAL YI R ++ + L R+LV++AS D+ATQYMNYMN+FF+AQKM V++D C L+++ LLQQG DITGG Y KV LLQ+L W+FLPD +R L LP +VDYRAACFCH+ LIDIG+VCS+CLS+FCKFSPICTTCHTVFK PGP+P Sbjct: 4 EINTSLLVIVLDVNPVQRIVKQETKILSQCLDSAIVFANAHLMQSSNNELAVMACHGHSAKFLYPC----ENAAEIRQIDGQYERFTMVERTVRLQLQKVIN-ELSTDTPLNTESLISGALSMALCYIARLERDKVAGQKLHPRILVITASNDSATQYMNYMNIFFTAQKMNVILDVCSLDQELTLLQQGCDITGGNYLKVP--QLAGLLQYLLWVFLPDPNVRSKLVLPPPVKVDYRAACFCHQELIDIGYVCSICLSVFCKFSPICTTCHTVFKMPGPIP 278
BLAST of general transcription factor iih subunit 3 vs. nr
Match: gi|1130251729|ref|XP_019766661.1| (PREDICTED: general transcription factor IIH subunit 3 [Dendroctonus ponderosae] >gi|478252933|gb|ENN73317.1| hypothetical protein YQE_10080, partial [Dendroctonus ponderosae]) HSP 1 Score: 311.612 bits (797), Expect = 1.335e-102 Identity = 153/294 (52.04%), Postives = 199/294 (67.69%), Query Frame = 0 Query: 14 KEPGVLAEPQGQLLVLVLDMNPNQVFFTKQPESLFHWLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYPSQTDQDESDNLRQRDGQFEGFYQVEATIRKQAAHILRAETQPTAPVHAESLLSGALSMALSYIHRRRQELSVAESLTSRVLVMSASGDTATQYMNYMNVFFSAQKMGVVIDTCMLEKDAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSVCLSIFCKFSPICTTCHTVFKTPGPLPGMKRK 307 KEP + + + LLV++LD NP Q + L + +DS ++ +NSHLM N +A +A HS++ F+YP + ++RQ DGQ+E F VE T+++ A +L +E+ ESLL+GA++MAL YI R ++ L SR+LV+S SGD+A+QYMNYMNVFF+AQK+ VV+D C L++ LLQQG DITGG+Y KV ALLQFL W+FLP+ +RE L LP +VDYRAACFCHR LIDIGFVCSVCLSIFCKFSPICTTCH VFK PGPL +K Sbjct: 10 KEPEITSADEISLLVVILDTNPTQKMLRDKQNQLTNIVDSVVAFSNSHLMQKAQNKLAVMACHSKTSQFIYPGA---KKPLDVRQVDGQYEAFLLVEKTVKQNLAELLGSESSTAV---TESLLAGAIAMALCYIARLQRTKPPGSKLNSRILVVSGSGDSASQYMNYMNVFFTAQKLNVVLDVCALDQHLSLLQQGCDITGGMYLKVP--QITALLQFLLWVFLPEPPIREKLVLPPPVKVDYRAACFCHRELIDIGFVCSVCLSIFCKFSPICTTCHMVFKIPGPLAVKPKK 295
BLAST of general transcription factor iih subunit 3 vs. nr
Match: gi|954575846|ref|XP_014612322.1| (PREDICTED: general transcription factor IIH subunit 3 [Polistes canadensis] >gi|954575848|ref|XP_014612324.1| PREDICTED: general transcription factor IIH subunit 3 [Polistes canadensis] >gi|954575850|ref|XP_014612325.1| PREDICTED: general transcription factor IIH subunit 3 [Polistes canadensis]) HSP 1 Score: 311.612 bits (797), Expect = 1.488e-102 Identity = 152/282 (53.90%), Postives = 193/282 (68.44%), Query Frame = 0 Query: 21 EPQGQLLVLVLDMNPNQVFFTKQPESLFHWLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYPSQTDQDESDNLRQRDGQFEGFYQVEATIRKQAAHILRAETQPTAPVHAESLLSGALSMALSYIHRRRQELSVAESLTSRVLVMSASGDTATQYMNYMNVFFSAQKMGVVIDTCMLEKDAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSVCLSIFCKFSPICTTCHTVFKTPGPLP 302 E + LL++VLD+NP Q ++ + L LDS I AN+HLM NN +A +A H FLYPS D D +RQ DGQ+E F ++E T+R+Q + T+ ++ ESL+SGALSMAL YI R Q+ E SR+LV++AS D+ QYMNYMN+FF+AQKMGV++D C L+++ LLQQG DITGG Y KV LLQ+L W+FLPD+ +R L LP VDYRAACFCH+ L+DIG+VCSVCLSIFCKFSPICTTCHTVFK PGP+P Sbjct: 11 EKEKNLLIVVLDVNPLQRIVKEEAKILTQCLDSTIVFANAHLMQASNNQLAVMACHGHGAMFLYPSDKDND----IRQIDGQYEKFTELERTVRRQIQLFVNQIPSDTS-LNGESLISGALSMALCYISRVSQDKDGDEKFCSRILVITASNDSTMQYMNYMNIFFTAQKMGVILDVCSLDQELTLLQQGCDITGGNYLKVP--QLNGLLQYLLWVFLPDSSVRSKLVLPPPVEVDYRAACFCHQELVDIGYVCSVCLSIFCKFSPICTTCHTVFKMPGPIP 285
BLAST of general transcription factor iih subunit 3 vs. nr
Match: gi|801387874|ref|XP_012056933.1| (PREDICTED: general transcription factor IIH subunit 3 [Atta cephalotes] >gi|1068420348|ref|XP_018055166.1| PREDICTED: general transcription factor IIH subunit 3 [Atta colombica]) HSP 1 Score: 310.842 bits (795), Expect = 2.075e-102 Identity = 151/282 (53.55%), Postives = 194/282 (68.79%), Query Frame = 0 Query: 21 EPQGQLLVLVLDMNPNQVFFTKQPESLFHWLDSAISLANSHLMLHPNNAIAAIASHSQSCSFLYPSQTDQDESDNLRQRDGQFEGFYQVEATIRKQAAHILRAETQPTAPVHAESLLSGALSMALSYIHRRRQELSVAESLTSRVLVMSASGDTATQYMNYMNVFFSAQKMGVVIDTCMLEKDAGLLQQGADITGGVYRKVDSRHFPALLQFLTWIFLPDTRLREALSLPSMDRVDYRAACFCHRNLIDIGFVCSVCLSIFCKFSPICTTCHTVFKTPGPLP 302 E + LLV+VLD+NP Q ++ + L LDS I AN+HLM NN +A ++ H S FLYP + + +RQ DGQ+E F VE T+R+Q ++ E P++ ESL+SGALSMAL YI R +E + L R+LV++AS D+ATQYMNYMN+FF+AQ+M V++D C L+++ LLQQG DITGG Y KV LLQ+L W+FLPD +R L LP +VDYRAACFCH+ LIDIG+VCS+CLSIFCKFSPICTTCHTVFK PGP+P Sbjct: 4 EIETSLLVIVLDVNPMQRIVKQETKILSQCLDSTIVFANAHLMQSSNNELAIMSCHGHSARFLYPC----ENAIEIRQMDGQYEKFTMVERTVRQQLQQVIN-EISMDVPLNMESLISGALSMALCYIARLEREKVAGQKLHPRMLVITASNDSATQYMNYMNIFFTAQRMNVILDVCSLDQELTLLQQGCDITGGNYLKVP--QLAGLLQYLLWVFLPDPSVRSKLVLPPPVKVDYRAACFCHQELIDIGYVCSICLSIFCKFSPICTTCHTVFKMPGPMP 278 The following BLAST results are available for this feature:
BLAST of general transcription factor iih subunit 3 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of general transcription factor iih subunit 3 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 13
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BLAST of general transcription factor iih subunit 3 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold297_size217559:64676..67902+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold297_size217559-snap-gene-0.27 ID=maker-scaffold297_size217559-snap-gene-0.27|Name=general transcription factor iih subunit 3|organism=Tigriopus kingsejongensis|type=gene|length=3227bp|location=Sequence derived from alignment at scaffold297_size217559:64676..67902+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'general transcription factor iih subunit 3' has the following synonyms
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