uronate isomerase, maker-scaffold301_size216225-snap-gene-0.16 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of uronate isomerase vs. L. salmonis genes
Match: EMLSAG00000008968 (supercontig:LSalAtl2s:LSalAtl2s55:295607:297551:-1 gene:EMLSAG00000008968 transcript:EMLSAT00000008968 description:"maker-LSalAtl2s55-augustus-gene-3.14") HSP 1 Score: 134.42 bits (337), Expect = 4.563e-37 Identity = 71/170 (41.76%), Postives = 102/170 (60.00%), Query Frame = 0 Query: 48 VDDRKGLLPEGAYDQPKDTVRGDVPQICSHDVPCKKINTRIQPPRLSDSI----LRRSIKDSSHWITSERHKRSLDRRARNVQCDHEVHMEAFGQNYTLCLKMKSINDDDIV---KRTWNTMNVTVFGSSNASQDIPIRNLDLQLATGFVLGEDFTSVSGFLMDDHFYGT 210 +DD++GL+ E + + + P CS DVPC+ +N+++QPP LS S+ RR I ++ +W S+ C+HE + AFG TLCL ++ DD I+ K ++ +NVTVF S N + DIP+ + DL+ ATGFV GE FTSVSGF+MD+HFYGT Sbjct: 26 LDDKQGLIDENLFRESNHN--PNFPTFCSEDVPCQTVNSQVQPP-LSPSVTNMRFRRGIPENKYWNGSD--------------CEHEARVSAFGGKXTLCLFLQRFGDDPIITSSKLDYSKINVTVFSSGNETMDIPLHSFDLKFATGFVKGEPFTSVSGFIMDNHFYGT 178
BLAST of uronate isomerase vs. nr
Match: gi|1325322716|ref|XP_023343181.1| (disintegrin and metalloproteinase domain-containing protein 10-like [Eurytemora affinis]) HSP 1 Score: 81.6481 bits (200), Expect = 1.684e-14 Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 0 Query: 109 ITSERHKRSLDRRARNVQCDHEVHMEAFGQNYTLCLKMKSINDDDIVKRTWNTMNVTVFGSSNASQDIPIRNLDLQLATGFVLGEDFTSVSGFLMDDHFYGT 210 I ++ KR R C+ E+ + F N TLCL + DIVK +N +NVTVF NAS +IP+ L+L+ G+V E ++S+ G+L++ HFYG Sbjct: 45 INTKYLKRRFKRNLDPGLCEMEIFLNVFEANMTLCLHSRKFKTADIVKDKYNGINVTVFQEENASVEIPLSTLELEYIVGYVREEPYSSIDGYLIEHHFYGV 146
BLAST of uronate isomerase vs. nr
Match: gi|1325324417|ref|XP_023344053.1| (ADAM 17-like protease isoform X1 [Eurytemora affinis] >gi|1325324419|ref|XP_023344054.1| ADAM 17-like protease isoform X2 [Eurytemora affinis]) HSP 1 Score: 72.7886 bits (177), Expect = 2.176e-11 Identity = 35/101 (34.65%), Postives = 61/101 (60.40%), Query Frame = 0 Query: 110 TSERHKRSLDRRARNVQ-CDHEVHMEAFGQNYTLCLKMKSINDDDIVKRTWNTMNVTVFGSSNASQDIPIRNLDLQLATGFVLGEDFTSVSGFLMDDHFYG 209 TS K+ L ++ + +Q C++ +EAF + +CL+ K D+DI+KR + + V V+G+ N + + L L G+VLGE+ +SVSG+L++ F+G Sbjct: 26 TSLSEKKVLTQQTKKIQNCNYIAEIEAFSKIIYICLRKKYFEDEDIIKRAYKDIPVYVYGNKNKKSKLSLARLKLGYVDGYVLGEEMSSVSGYLVNSTFFG 126
BLAST of uronate isomerase vs. nr
Match: gi|1325324421|ref|XP_023344055.1| (ADAM 17-like protease isoform X3 [Eurytemora affinis]) HSP 1 Score: 71.2478 bits (173), Expect = 7.266e-11 Identity = 36/101 (35.64%), Postives = 62/101 (61.39%), Query Frame = 0 Query: 110 TSERHKRSLDRRARNVQ-CDHEVHMEAFGQNYTLCLKMKSINDDDIVKRTWNTMNVTVFGSSNASQDIPIRNLDLQLATGFVLGEDFTSVSGFLMDDHFYG 209 TSE K+ L ++ + +Q C++ +EAF + +CL+ K D+DI+KR + + V V+G+ N + + L L G+VLGE+ +SVSG+L++ F+G Sbjct: 26 TSE--KKVLTQQTKKIQNCNYIAEIEAFSKIIYICLRKKYFEDEDIIKRAYKDIPVYVYGNKNKKSKLSLARLKLGYVDGYVLGEEMSSVSGYLVNSTFFG 124 The following BLAST results are available for this feature:
BLAST of uronate isomerase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of uronate isomerase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of uronate isomerase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 3
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold301_size216225:68312..69014+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold301_size216225-snap-gene-0.16 ID=maker-scaffold301_size216225-snap-gene-0.16|Name=uronate isomerase|organism=Tigriopus kingsejongensis|type=gene|length=703bp|location=Sequence derived from alignment at scaffold301_size216225:68312..69014+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'uronate isomerase' has the following synonyms
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