uronate isomerase, maker-scaffold301_size216225-snap-gene-0.16 (gene) Tigriopus kingsejongensis

Overview
Nameuronate isomerase
Unique Namemaker-scaffold301_size216225-snap-gene-0.16
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of uronate isomerase vs. L. salmonis genes
Match: EMLSAG00000008968 (supercontig:LSalAtl2s:LSalAtl2s55:295607:297551:-1 gene:EMLSAG00000008968 transcript:EMLSAT00000008968 description:"maker-LSalAtl2s55-augustus-gene-3.14")

HSP 1 Score: 134.42 bits (337), Expect = 4.563e-37
Identity = 71/170 (41.76%), Postives = 102/170 (60.00%), Query Frame = 0
Query:   48 VDDRKGLLPEGAYDQPKDTVRGDVPQICSHDVPCKKINTRIQPPRLSDSI----LRRSIKDSSHWITSERHKRSLDRRARNVQCDHEVHMEAFGQNYTLCLKMKSINDDDIV---KRTWNTMNVTVFGSSNASQDIPIRNLDLQLATGFVLGEDFTSVSGFLMDDHFYGT 210
            +DD++GL+ E  + +       + P  CS DVPC+ +N+++QPP LS S+     RR I ++ +W  S+              C+HE  + AFG   TLCL ++   DD I+   K  ++ +NVTVF S N + DIP+ + DL+ ATGFV GE FTSVSGF+MD+HFYGT
Sbjct:   26 LDDKQGLIDENLFRESNHN--PNFPTFCSEDVPCQTVNSQVQPP-LSPSVTNMRFRRGIPENKYWNGSD--------------CEHEARVSAFGGKXTLCLFLQRFGDDPIITSSKLDYSKINVTVFSSGNETMDIPLHSFDLKFATGFVKGEPFTSVSGFIMDNHFYGT 178          
BLAST of uronate isomerase vs. nr
Match: gi|1325322716|ref|XP_023343181.1| (disintegrin and metalloproteinase domain-containing protein 10-like [Eurytemora affinis])

HSP 1 Score: 81.6481 bits (200), Expect = 1.684e-14
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 0
Query:  109 ITSERHKRSLDRRARNVQCDHEVHMEAFGQNYTLCLKMKSINDDDIVKRTWNTMNVTVFGSSNASQDIPIRNLDLQLATGFVLGEDFTSVSGFLMDDHFYGT 210
            I ++  KR   R      C+ E+ +  F  N TLCL  +     DIVK  +N +NVTVF   NAS +IP+  L+L+   G+V  E ++S+ G+L++ HFYG 
Sbjct:   45 INTKYLKRRFKRNLDPGLCEMEIFLNVFEANMTLCLHSRKFKTADIVKDKYNGINVTVFQEENASVEIPLSTLELEYIVGYVREEPYSSIDGYLIEHHFYGV 146          
BLAST of uronate isomerase vs. nr
Match: gi|1325324417|ref|XP_023344053.1| (ADAM 17-like protease isoform X1 [Eurytemora affinis] >gi|1325324419|ref|XP_023344054.1| ADAM 17-like protease isoform X2 [Eurytemora affinis])

HSP 1 Score: 72.7886 bits (177), Expect = 2.176e-11
Identity = 35/101 (34.65%), Postives = 61/101 (60.40%), Query Frame = 0
Query:  110 TSERHKRSLDRRARNVQ-CDHEVHMEAFGQNYTLCLKMKSINDDDIVKRTWNTMNVTVFGSSNASQDIPIRNLDLQLATGFVLGEDFTSVSGFLMDDHFYG 209
            TS   K+ L ++ + +Q C++   +EAF +   +CL+ K   D+DI+KR +  + V V+G+ N    + +  L L    G+VLGE+ +SVSG+L++  F+G
Sbjct:   26 TSLSEKKVLTQQTKKIQNCNYIAEIEAFSKIIYICLRKKYFEDEDIIKRAYKDIPVYVYGNKNKKSKLSLARLKLGYVDGYVLGEEMSSVSGYLVNSTFFG 126          
BLAST of uronate isomerase vs. nr
Match: gi|1325324421|ref|XP_023344055.1| (ADAM 17-like protease isoform X3 [Eurytemora affinis])

HSP 1 Score: 71.2478 bits (173), Expect = 7.266e-11
Identity = 36/101 (35.64%), Postives = 62/101 (61.39%), Query Frame = 0
Query:  110 TSERHKRSLDRRARNVQ-CDHEVHMEAFGQNYTLCLKMKSINDDDIVKRTWNTMNVTVFGSSNASQDIPIRNLDLQLATGFVLGEDFTSVSGFLMDDHFYG 209
            TSE  K+ L ++ + +Q C++   +EAF +   +CL+ K   D+DI+KR +  + V V+G+ N    + +  L L    G+VLGE+ +SVSG+L++  F+G
Sbjct:   26 TSE--KKVLTQQTKKIQNCNYIAEIEAFSKIIYICLRKKYFEDEDIIKRAYKDIPVYVYGNKNKKSKLSLARLKLGYVDGYVLGEEMSSVSGYLVNSTFFG 124          
The following BLAST results are available for this feature:
BLAST of uronate isomerase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000089684.563e-3741.76supercontig:LSalAtl2s:LSalAtl2s55:295607:297551:-1... [more]
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BLAST of uronate isomerase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of uronate isomerase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 3
Match NameE-valueIdentityDescription
gi|1325322716|ref|XP_023343181.1|1.684e-1438.24disintegrin and metalloproteinase domain-containin... [more]
gi|1325324417|ref|XP_023344053.1|2.176e-1134.65ADAM 17-like protease isoform X1 [Eurytemora affin... [more]
gi|1325324421|ref|XP_023344055.1|7.266e-1135.64ADAM 17-like protease isoform X3 [Eurytemora affin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold301_size216225supercontigscaffold301_size216225:68312..69014 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteP:glucuronate catabolic process
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold301_size216225-snap-gene-0.16-mRNA-1maker-scaffold301_size216225-snap-gene-0.16-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold301_size216225:68312..69014+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold301_size216225-snap-gene-0.16 ID=maker-scaffold301_size216225-snap-gene-0.16|Name=uronate isomerase|organism=Tigriopus kingsejongensis|type=gene|length=703bp|location=Sequence derived from alignment at scaffold301_size216225:68312..69014+ (Tigriopus kingsejongensis)
ATGATCGTTGGGAATCCCAAGCATCACCATGTCCACATTTCAGCCAACCA CCCCTATGCTGAGTTTGATCCATTGGTTAAACAGTATCCGAAACATCACC AGCTTCGGAACACTTTGATCGACGGACCGGTTCATTTGAACGTTGACGAT CGCAAGGGACTTTTACCCGAGGGAGCTTACGACCAACCCAAGGACACAGT GCGAGGAGATGTGCCGCAAATATGTTCCCACGATGTCCCGTGCAAAAAAA TTAATACTCGAATCCAGCCTCCGAGGCTATCCGATTCCATCTTGAGGAGA AGCATAAAGGACAGTTCCCATTGGATTACCAGGTGCCCAATTTTATACTA ACCTCGGAGTAAGGAGACACAATTTAATAGGCTACAATTGTCATCTTAGT TTCAGTGAGAGACATAAGCGATCATTGGACCGACGTGCCAGAAATGTCCA ATGCGATCACGAGGTTCACATGGAGGCTTTTGGACAAAATTATACACTCT GCCTGAAGATGAAAAGCATAAATGACGATGATATCGTCAAACGCACTTGG AACACCATGAATGTGACCGTTTTTGGTAGCAGTAATGCATCCCAGGACAT CCCAATACGCAATTTGGATCTACAGCTAGCTACAGGGTTCGTCCTGGGTG AAGACTTCACCAGTGTATCCGGATTCCTCATGGACGACCACTTTTATGGG ACG
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Synonyms
The feature 'uronate isomerase' has the following synonyms
Synonym
Tk06228
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