u4 small nuclear ribonucleoprotein 27 kda protein, maker-scaffold308_size214241-snap-gene-1.48 (gene) Tigriopus kingsejongensis

Overview
Nameu4 small nuclear ribonucleoprotein 27 kda protein
Unique Namemaker-scaffold308_size214241-snap-gene-1.48
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of u4 small nuclear ribonucleoprotein 27 kda protein vs. L. salmonis genes
Match: EMLSAG00000004178 (supercontig:LSalAtl2s:LSalAtl2s220:73548:73982:1 gene:EMLSAG00000004178 transcript:EMLSAT00000004178 description:"augustus_masked-LSalAtl2s220-processed-gene-0.2")

HSP 1 Score: 48.1358 bits (113), Expect = 1.620e-7
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 0 
Query:   75 RRSRSPLDRKADREKNWDEEREKRKRELRDESFMMVATTEIP--NEHLEGKTPEEIEMMRVMGFAGFTTTKGKK 146
             R+ SP     D    WD EREK+K+E + +S ++ +   IP   + + GKT EE+EM++ MGFA F T+K KK
Sbjct:   36 HRAESPPRTPVDESAAWDREREKKKKEKQHQSLVLASQHPIPFSEKEMAGKTQEELEMIKTMGFASFDTSKNKK 109
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BLAST of u4 small nuclear ribonucleoprotein 27 kda protein vs. SwissProt
Match: gi|74760570|sp|Q8WVK2.1|SNR27_HUMAN (RecName: Full=U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein; Short=U4/U6.U5 snRNP 27 kDa protein; Short=U4/U6.U5-27K; AltName: Full=Nucleic acid-binding protein RY-1; AltName: Full=U4/U6.U5 tri-snRNP-associated 27 kDa protein; Short=27K; AltName: Full=U4/U6.U5 tri-snRNP-associated protein 3)

HSP 1 Score: 51.9878 bits (123), Expect = 2.390e-7
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0 
Query:  114 EIPNEHLEGKTPEEIEMMRVMGFAGFTTTKGKKSDRAPLLLGRVEGTAGALAL 166
            +I  E LEGKT EEIEMM++MGFA F +TKGKK          V+G+  A A+
Sbjct:   87 QITEEDLEGKTEEEIEMMKLMGFASFDSTKGKK----------VDGSVNAYAI 129
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BLAST of u4 small nuclear ribonucleoprotein 27 kda protein vs. SwissProt
Match: gi|81900912|sp|Q8K194.1|SNR27_MOUSE (RecName: Full=U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein; Short=U4/U6.U5 snRNP 27 kDa protein; Short=U4/U6.U5-27K; AltName: Full=U4/U6.U5 tri-snRNP-associated protein 3)

HSP 1 Score: 51.9878 bits (123), Expect = 2.390e-7
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0 
Query:  114 EIPNEHLEGKTPEEIEMMRVMGFAGFTTTKGKKSDRAPLLLGRVEGTAGALAL 166
            +I  E LEGKT EEIEMM++MGFA F +TKGKK          V+G+  A A+
Sbjct:   87 QITEEDLEGKTEEEIEMMKLMGFASFDSTKGKK----------VDGSVNAYAI 129
The following BLAST results are available for this feature:
BLAST of u4 small nuclear ribonucleoprotein 27 kda protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000041781.620e-741.89supercontig:LSalAtl2s:LSalAtl2s220:73548:73982:1 g... [more]
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BLAST of u4 small nuclear ribonucleoprotein 27 kda protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
gi|74760570|sp|Q8WVK2.1|SNR27_HUMAN2.390e-750.94RecName: Full=U4/U6.U5 small nuclear ribonucleopro... [more]
gi|81900912|sp|Q8K194.1|SNR27_MOUSE2.390e-750.94RecName: Full=U4/U6.U5 small nuclear ribonucleopro... [more]
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BLAST of u4 small nuclear ribonucleoprotein 27 kda protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold308_size214241supercontigscaffold308_size214241:160348..162081 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold308_size214241-snap-gene-1.48-mRNA-1maker-scaffold308_size214241-snap-gene-1.48-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold308_size214241:160348..162081-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold308_size214241-snap-gene-1.48 ID=maker-scaffold308_size214241-snap-gene-1.48|Name=u4 small nuclear ribonucleoprotein 27 kda protein|organism=Tigriopus kingsejongensis|type=gene|length=1734bp|location=Sequence derived from alignment at scaffold308_size214241:160348..162081- (Tigriopus kingsejongensis)
ATGCCCCGATCACGATCCAAGAGCCCCAGTCGGAGCGCCAGTCGGCCCCG
GAGACGCCGCAGTCGCTCGCGTGAGCGAAAGAAGCGCCGTGATCGCTCCC
CAGACCGTGCCCACGACCGGGTTCAATCCCGGGACAAGTCCCACGATCAA
TCCCGGGACAAGTCCCACGATCAATCCCGGGACAAGTCCCGCGATCAATC
CCGGGACCGTTCGCGAGAGCGAAGGCGGTCACGCAGTCCCTTGGATCGGA
AGGCCGACCGGGAGAAGAACTGGGACGAGGAGCGCGAAAAGCGGAAGCGC
GAGTTGCGCGATGAGAGCTTCATGATGGTGGCCACCACCGAGATTCCCAA
TGAGCACCTGGAGGGTAAGACCCCCGAGGAAATCGAGATGATGCGGGTCA
TGGGATTTGCCGGCTTCACCACCACCAAGGGAAAGAAGGTGAGCGTTGGG
CTCCAAGAAAGGCTCAATTATGGAACTGCAATGACCCGTCTCTTTAAATT
TCAGGTTGTGGGCAACAACTCGGGCGAGGTTCACGTAGTGTTGAAACGAA
AATACAGACAGTACATGAACCGGAAAGGTGGATTCAACCGCCCTCTAGAT
TACGTGCACTGACGCGTCATAATTGTGCTCCGTTTTTCGCCTCTGACTGT
ACATGTACTTTAGCATTCAAGGTCGCCGACCACTCAGTAAACACTCATTT
TCACGAATCAAGGCCCACCTTGCATTCATAAGTTTATTTTTTCTTATCTA
CAAGGACGGCGTAAAAATTGAAAAAGGAGGAAAATCATATCGAAGCGAAG
TGCGCTTCCAAAGGTTGACTCGAAAATAAGTAGCGCGCATTTGAGGAAGT
GGCACGTGCTTCAAGCTCGAAGGGTTCGCCCCCAGCAGATGGAATGTTGC
CCTCGAAATCCTCTGCCAGAGGAGGGGAATGTGGAATACCCGGGTTGTGG
GGGAGGAGAAGTCGCCACGCCCAGTACTTTGTGGGGGAGGCTGGAAGGAT
CCGAAGAAGGGGCCAGGAGCATAAATCACAGTTCAGGCCAGGGAGACGAC
GGATTCGAGGCCCACTCTTGGCTGACGGAAGCTTCATGGGGAAATAGTAT
GCGGGTGGGCCTCTCAATGGCCCGCCACCATTATGCACCCAGCTGGGAGG
GCATCCTGGGCTGGGACTGCGGTGCTTGGGAGGGCAGTTCCTCCGCGATA
ATTGTGATGGTGATTGCGTTTTGATCTGACAGAGTGAACGGACTCTCTCT
CTCTCTTGAGCGGCGATTTCAAACTAAAGAGGGTTCTTCCCGTTTTGGTG
GACCGAGTTCAGCCAGCTACCGGACCCGACAGGTCGCTCTGGAACACGTG
GGGGAACATTGGGGACTGGGCGCCTGAAATCAAACACAAGAAACAGAGAT
TCGAGGTCAGTGAGTGGGGACTCGGGCGCTGAGGGAATGTTCCGGTTCAG
GCGAGGCTCCAGTCTAGTCGGACAGGGCCCCGCTACTTTTGGGGCGCGTC
GAGGGAACGGCCGGAGCCTTGGCCTTGGTCCGGATCATGTACGAGCCTCG
CGAGGAGGAACGCTTGACTTTAGGGACGGACCGGGACGAGGAGGCGGGTT
GGGGCGGGGGGAACGAGGTGGAATGTTGGAATGTGACCAATTTGGGATTT
AGTTTCTGGGGCAAAGGGGGCGGGAGAGTATTTCTGCGCCGGGCCACGGG
CGGCGAGGGCGCCAAAGGCTTGGTCTTTGGCTGA
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Synonyms
The feature 'u4 small nuclear ribonucleoprotein 27 kda protein' has the following synonyms
Synonym
Tk09071
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