abc transporter, maker-scaffold312_size212576-snap-gene-0.17 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000001122 (supercontig:LSalAtl2s:LSalAtl2s118:125434:135666:1 gene:EMLSAG00000001122 transcript:EMLSAT00000001122 description:"maker-LSalAtl2s118-snap-gene-1.28") HSP 1 Score: 53.5286 bits (127), Expect = 2.478e-8 Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 0 Query: 65 KGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQE 121 +G+ + LLG NGAGK+TT +++ +N TSG I GY I ++ ++ LG PQE Sbjct: 453 RGECFGLLGINGAGKTTTFKMLTGDINPTSGDAFINGYSIFNEMGRCRQSLGYCPQE 509
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000003724 (supercontig:LSalAtl2s:LSalAtl2s1:3545780:3558615:1 gene:EMLSAG00000003724 transcript:EMLSAT00000003724 description:"maker-LSalAtl2s1-augustus-gene-35.19") HSP 1 Score: 53.1434 bits (126), Expect = 2.944e-8 Identity = 47/188 (25.00%), Postives = 86/188 (45.74%), Query Frame = 0 Query: 70 ALLGPNGAGKSTTIGIISSLVNKTSGKVKI-----FGYDIDTDLVEAKKQLG---LVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGEL 249 ++G NG+GKST + +I ++ T G+ + FGY + + L ++ ++F + E+ Q+L G++G+ A + + +LSGG K R+ A EP LILDEPT +D+E ++ L + N +IL H M+C+ + + ++G++ Sbjct: 476 CIVGKNGSGKSTLLKLIMEEISVTDGRRIVHRNLKFGYFSQHHVDQLNMNLCPLQIMEKKFRGKKMEECRQML----GHFGISGDLAL-----------------QKTSSLSGGQKSRVAFAVLCGEEPNFLILDEPTNHLDLETIDALGHGLMKYNG---GLILVCHDERLIRMVCQELWVCSKGKI 639
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000000940 (supercontig:LSalAtl2s:LSalAtl2s1166:1016:21423:-1 gene:EMLSAG00000000940 transcript:EMLSAT00000000940 description:"maker-LSalAtl2s1166-snap-gene-0.62") HSP 1 Score: 48.9062 bits (115), Expect = 8.911e-7 Identity = 53/210 (25.24%), Postives = 100/210 (47.62%), Query Frame = 0 Query: 51 GINILDWSFLQRAHKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYD----------IDTDLVEAKKQLGLVP--------QEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDL-WEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNI 241 G ++ + LQ H G Y L+GPNG GK+T + I + + + + + ++T L +K+ L+ QE + E++ ++ ++ G ++AE K A++ L L E ++ + SGG + R+ +ARAL EP LL+LDEPT +D+ + +L+ + T+++ +H + +C +I Sbjct: 201 GKDLFRDAKLQITH-GRRYGLVGPNGHGKTTLLRHIGTRSLQIPPNIDVLICEQEVVANEMSALETVLQSDEKRTALLKECKDLEKKQENGVDVTERLNEV-YDELRAIGADQAEPK--ARRLLAGLGFDKEMQERSTNKFSGGWRMRVSLARALYIEPTLLMLDEPTNHLDLNAVIWLDNYLQNWKK---TLLVVSHDQSFLDNICTDI 403
BLAST of abc transporter vs. SwissProt
Match: gi|549484|sp|P36879.1|YADG_ECOLI (RecName: Full=Uncharacterized ABC transporter ATP-binding protein YadG) HSP 1 Score: 361.688 bits (927), Expect = 4.766e-125 Identity = 172/216 (79.63%), Postives = 193/216 (89.35%), Query Frame = 0 Query: 66 GDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLE 281 GDFYALLGPNGAGKSTTIGIISSLVNKTSG+V +FGYD++ D+V AK+QLGLVPQEFNFN +E V+QI+VNQAGYYGVER EA +R++KYL LDLW KR+E +R LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMW FLK++N+KG TIILTTHYLEEAEMLCRNIGII GELVE+TSMKALL KL ETF+LDLAP S + L+ Sbjct: 31 GDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFILDLAPKSPLPKLD 246
BLAST of abc transporter vs. SwissProt
Match: gi|239938767|sp|P94440.2|YFIL_BACSU (RecName: Full=Uncharacterized ABC transporter ATP-binding protein YfiL) HSP 1 Score: 176.792 bits (447), Expect = 1.343e-52 Identity = 89/204 (43.63%), Postives = 129/204 (63.24%), Query Frame = 0 Query: 65 KGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFV 268 KG+ + LLGPNGAGKSTTI +IS LV SG + + GY I + +AK+++G+VPQE + L+ YG+ EAK RA + L + L E+ + T SGGMKRR+ I ALMH+P+LLI+DEPT G+D + R + +K++NE G+T+I T+HY+EE E LC IGII++GE++ + L +L +T + Sbjct: 26 KGESFGLLGPNGAGKSTTISMISGLVPHDSGNITVGGYVIGKETAKAKQKIGIVPQEIALYPTLTAHENLMFWGKMYGLTHGEAKKRAAEVLEYVGLTERAKDKIETFSGGMKRRINIGAALMHKPELLIMDEPTVGIDPQSRNHILETVKQLNETGMTVIYTSHYMEEVEFLCDRIGIIDQGEMIAIGTKTDLCSRLGGDTII 229
BLAST of abc transporter vs. SwissProt
Match: gi|124015175|sp|Q39GT7.2|NODI_BURL3 (RecName: Full=Nod factor export ATP-binding protein I; AltName: Full=Nodulation ATP-binding protein I) HSP 1 Score: 145.206 bits (365), Expect = 1.688e-40 Identity = 74/195 (37.95%), Postives = 117/195 (60.00%), Query Frame = 0 Query: 66 GDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLK 260 G+ Y LLGPNGAGK+TT+ ++ L + +G + + G + + A++++G+VPQ N + V + L+ Y+G+ A K L L K D LSGGMKRRL +ARAL+++P +L+LDEPT G+D + R MW L+ + +G TI++TTH++EEAE LC + +I G + + + AL++ Sbjct: 31 GECYGLLGPNGAGKTTTLKMLLGLTHPDAGTISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGMSAQAAHALVKPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILITTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 225
BLAST of abc transporter vs. SwissProt
Match: gi|122978951|sp|Q1BWI2.1|NODI_BURCA (RecName: Full=Nod factor export ATP-binding protein I; AltName: Full=Nodulation ATP-binding protein I) HSP 1 Score: 144.436 bits (363), Expect = 3.093e-40 Identity = 73/195 (37.44%), Postives = 118/195 (60.51%), Query Frame = 0 Query: 66 GDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLK 260 G+ Y LLGPNGAGK+TT+ ++ L + +G + + G + + A++++G+VPQ N + V + L+ + Y+G+ A+ L L K D LSGGMKRRL +ARAL+++P +L+LDEPT G+D + R MW L+ + +G TI++TTH++EEAE LC + +I G + + + AL++ Sbjct: 31 GECYGLLGPNGAGKTTTLKMLLGLAHPDAGTISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFSRYFGMSAQAARALVAPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILITTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 225
BLAST of abc transporter vs. SwissProt
Match: gi|124015174|sp|Q63TX3.2|NODI_BURPS (RecName: Full=Nod factor export ATP-binding protein I; AltName: Full=Nodulation ATP-binding protein I) HSP 1 Score: 144.05 bits (362), Expect = 5.315e-40 Identity = 72/195 (36.92%), Postives = 118/195 (60.51%), Query Frame = 0 Query: 66 GDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLK 260 G+ + LLGPNGAGK+TT+ ++ + + +G + + G + + A++++G+VPQ N + V + L+ A Y+G+ A+ L L K D LSGGMKRRL +ARAL+++P +L+LDEPT G+D + R MW L+ + +G TI+LTTH++EEAE LC + +I G + + + + L++ Sbjct: 31 GECFGLLGPNGAGKTTTLKMLLGITHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFARYFGLTAHAARALVPPLLEFAKLESKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCHRLCVIEEGRKIAEGAPRMLIE 225
BLAST of abc transporter vs. SwissProt
Match: gi|124015172|sp|Q62K72.2|NODI_BURMA (RecName: Full=Nod factor export ATP-binding protein I; AltName: Full=Nodulation ATP-binding protein I >gi|124015173|sp|Q3JSQ0.2|NODI_BURP1 RecName: Full=Nod factor export ATP-binding protein I; AltName: Full=Nodulation ATP-binding protein I) HSP 1 Score: 143.665 bits (361), Expect = 6.232e-40 Identity = 72/195 (36.92%), Postives = 118/195 (60.51%), Query Frame = 0 Query: 66 GDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLK 260 G+ + LLGPNGAGK+TT+ ++ + + +G + + G + + A++++G+VPQ N + V + L+ A Y+G+ A+ L L K D LSGGMKRRL +ARAL+++P +L+LDEPT G+D + R MW L+ + +G TI+LTTH++EEAE LC + +I G + + + + L++ Sbjct: 31 GECFGLLGPNGAGKTTTLKMLLGITHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFARYFGLTAHAARALVPPLLEFAKLESKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCHRLCVIEEGRKIAEGAPRMLIE 225
BLAST of abc transporter vs. SwissProt
Match: gi|124015176|sp|Q2SVP3.2|NODI_BURTA (RecName: Full=Nod factor export ATP-binding protein I; AltName: Full=Nodulation ATP-binding protein I) HSP 1 Score: 143.28 bits (360), Expect = 9.732e-40 Identity = 72/197 (36.55%), Postives = 117/197 (59.39%), Query Frame = 0 Query: 64 HKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLK 260 G+ + LLGPNGAGK+T + ++ + + +G + + G + + A++++G+VPQ N + V + L+ A Y+G+ EA+ L L K D LSGGMKRRL +ARAL++ P +L+LDEPT G+D + R MW L+ + +G TI+LTTH++EEAE LC + +I G + + + + L++ Sbjct: 29 QPGECFGLLGPNGAGKTTALKMLLGITHPDAGSISLCGEPVPSRARHARRRVGVVPQFDNLDPDFTVRENLLVFARYFGLAAHEARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNNPDVLVLDEPTTGLDPQARHLMWERLRSLLVRGKTILLTTHFMEEAERLCHRLCVIEEGRKIAEGAPRTLIE 225
BLAST of abc transporter vs. SwissProt
Match: gi|123259958|sp|Q1LKJ2.1|NODI_RALME (RecName: Full=Nod factor export ATP-binding protein I; AltName: Full=Nodulation ATP-binding protein I) HSP 1 Score: 143.28 bits (360), Expect = 1.046e-39 Identity = 75/184 (40.76%), Postives = 110/184 (59.78%), Query Frame = 0 Query: 64 HKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRG 247 G + LLGPNGAGK+TT+ ++ L SG + + G I +A+ ++G+VPQ N + V + L Y+G+ A+ R K L L + D R LSGGM+RRL +ARAL+++P LLI+DEPT G+D + R +W LK + G TI+LTTH++EEAE LC ++ +I+ G Sbjct: 28 QPGQCFGLLGPNGAGKTTTLRMLLGLTTPASGTLMLCGEPIPQRAPQARMRVGVVPQFDNLDPDFSVIENLRIFGRYFGLSSAQIAERVPKLLEFARLESRADAQVRDLSGGMRRRLTVARALINDPDLLIMDEPTTGLDPQARHLIWERLKSLLSAGKTILLTTHFMEEAERLCNHLCVIDAG 211
BLAST of abc transporter vs. SwissProt
Match: gi|81849565|sp|Q8XXY9.1|NODI_RALSO (RecName: Full=Nod factor export ATP-binding protein I; AltName: Full=Nodulation ATP-binding protein I) HSP 1 Score: 140.584 bits (353), Expect = 1.870e-38 Identity = 70/183 (38.25%), Postives = 111/183 (60.66%), Query Frame = 0 Query: 65 KGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRG 247 +G + LLGPNGAGK+TT+ ++ + +G +++ G I A+ ++G+VPQ N + V + L Y+G+ A + R L L +K D P R LSGGM+RRL +AR+L+++P +L++DEPT G+D + R +W L+ + G TI+LTTH++EEAE LC + +I+ G Sbjct: 41 RGQCFGLLGPNGAGKTTTLRMLLGMTMPDAGTLQLCGETIPGHAHRARMRVGVVPQFDNLDPDFTVSENLQIFGRYFGLPAATIRKRMPGLLEFARLEQKADAPVRALSGGMRRRLTVARSLINDPDVLVMDEPTTGLDPQARHLIWERLRSLLASGKTILLTTHFMEEAERLCDELCVIDNG 223
BLAST of abc transporter vs. SwissProt
Match: gi|6093521|sp|P72335.1|NODI_RHIS3 (RecName: Full=Nod factor export ATP-binding protein I; AltName: Full=Nodulation ATP-binding protein I) HSP 1 Score: 138.658 bits (348), Expect = 5.883e-38 Identity = 79/219 (36.07%), Postives = 122/219 (55.71%), Query Frame = 0 Query: 43 LAGIALYVGINILDWSFLQRAHKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKK 261 LAG+ G ++ G+ + LLGPNGAGKST ++ + +GK+ + G + A+K +G+VPQ N +Q V + L+ Y+G+ + K L L K D LSGGMKRRL +ARAL+++P+LL++DEPT G+D R +W L+ + +G TIILTTH++EEAE LC + ++ G + + S AL+++ Sbjct: 8 LAGVKKSFGDKLVVNGLSFTVASGECFGLLGPNGAGKSTIARMLLGMTVPDAGKITVLGEPVGARSRLARKSIGVVPQFDNLDQEFTVRENLLVFGRYFGMSTRKIKEVIPSLLEFARLESKADARVGELSGGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERLRFLLARGKTIILTTHFMEEAERLCDRLCVLEHGRKLAEGSPHALIEE 226
BLAST of abc transporter vs. nr
Match: gi|1149062866|ref|WP_077645810.1| (MULTISPECIES: ABC transporter ATP-binding protein [Salinivibrio] >gi|1146149692|gb|OOF00424.1| ABC transporter [Salinivibrio sp. IB643] >gi|1146156606|gb|OOF07005.1| ABC transporter [Salinivibrio sp. MA607] >gi|1146157294|gb|OOF07673.1| ABC transporter [Salinivibrio sp. MA440]) HSP 1 Score: 380.563 bits (976), Expect = 4.565e-130 Identity = 178/217 (82.03%), Postives = 197/217 (90.78%), Query Frame = 0 Query: 65 KGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLE 281 +GDFYALLGPNGAGKSTTIGI+SSLVNKT G+V IFGYD+DT VEAKKQ+GLVPQEFNFNQ+EKV+QI+VNQAGYYGV RA+AK RAKKYL+ LDLW+KR EP+R LSGGMKRRLMIARALMHEP+LLILDEPTAGVDIELRRSMW FL +IN +GITIILTTHYLEEAE LCRNIGIINRG+LVEDTSMKALL KLD ETF+LDL P ++ LE Sbjct: 29 EGDFYALLGPNGAGKSTTIGILSSLVNKTQGQVSIFGYDLDTQKVEAKKQIGLVPQEFNFNQFEKVQQIVVNQAGYYGVPRAQAKARAKKYLSQLDLWDKRHEPARNLSGGMKRRLMIARALMHEPRLLILDEPTAGVDIELRRSMWDFLSQINRQGITIILTTHYLEEAETLCRNIGIINRGQLVEDTSMKALLSKLDAETFILDLQPGHQLNALE 245
BLAST of abc transporter vs. nr
Match: gi|1149089024|ref|WP_077667350.1| (ABC transporter ATP-binding protein [Salinivibrio siamensis] >gi|1146136869|gb|OOE87876.1| ABC transporter [Salinivibrio siamensis]) HSP 1 Score: 380.178 bits (975), Expect = 5.559e-130 Identity = 179/218 (82.11%), Postives = 198/218 (90.83%), Query Frame = 0 Query: 64 HKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLE 281 +GDFYALLGPNGAGKSTTIGI+SSLVNKT G+V IFGYD+D+ VEAKKQ+GLVPQEFNFNQ+EKVEQI+VNQAGYYGV R +AK+RAKKYL+ LDLW+KR EP+R LSGGMKRRLMIARALMHEP+LLILDEPTAGVDIELRRSMW FL EIN +GITIILTTHYLEEAE LCRNIGIINRGELVEDTSMKALL KLD ETF+LDL P K++ L+ Sbjct: 28 EEGDFYALLGPNGAGKSTTIGILSSLVNKTQGQVSIFGYDLDSQKVEAKKQIGLVPQEFNFNQFEKVEQIVVNQAGYYGVPRDQAKLRAKKYLSQLDLWDKRHEPARNLSGGMKRRLMIARALMHEPRLLILDEPTAGVDIELRRSMWDFLSEINRQGITIILTTHYLEEAETLCRNIGIINRGELVEDTSMKALLAKLDAETFILDLQPGHKLSTLD 245
BLAST of abc transporter vs. nr
Match: gi|1148720671|ref|WP_077456525.1| (ABC transporter ATP-binding protein [Salinivibrio kushneri] >gi|1146094242|gb|OOE46353.1| ABC transporter [Salinivibrio kushneri] >gi|1146096174|gb|OOE48194.1| ABC transporter [Salinivibrio kushneri]) HSP 1 Score: 380.178 bits (975), Expect = 6.067e-130 Identity = 179/218 (82.11%), Postives = 198/218 (90.83%), Query Frame = 0 Query: 64 HKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLE 281 +GDFYALLGPNGAGKSTTIGI+SSLVNKT G+V IFGYD+DT VEAKKQ+GLVPQEFNFNQ+EKVEQI+VNQAGYYGV R +AK+RAKKYL+ LDLW+KR EP+R LSGGMKRRLMIARALMHEP+LLILDEPTAGVDIELRRSMW FL EIN +GITIILTTHYLEEAE LCRNIGIINRGELVEDTSMK+LL KLD ETF+LDL P K++ L+ Sbjct: 28 EEGDFYALLGPNGAGKSTTIGILSSLVNKTQGQVSIFGYDLDTQKVEAKKQIGLVPQEFNFNQFEKVEQIVVNQAGYYGVPRDQAKLRAKKYLSQLDLWDKRHEPARNLSGGMKRRLMIARALMHEPRLLILDEPTAGVDIELRRSMWDFLTEINRQGITIILTTHYLEEAETLCRNIGIINRGELVEDTSMKSLLAKLDAETFILDLQPGHKLSTLD 245
BLAST of abc transporter vs. nr
Match: gi|1148752003|ref|WP_077484289.1| (MULTISPECIES: ABC transporter ATP-binding protein [Salinivibrio] >gi|1146108772|gb|OOE60351.1| ABC transporter [Salinivibrio sp. ML323] >gi|1146117893|gb|OOE69245.1| ABC transporter [Salinivibrio sp. IB282] >gi|1146131783|gb|OOE82872.1| ABC transporter [Salinivibrio sp. PR6]) HSP 1 Score: 379.793 bits (974), Expect = 7.634e-130 Identity = 179/218 (82.11%), Postives = 198/218 (90.83%), Query Frame = 0 Query: 64 HKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLE 281 +GDFYALLGPNGAGKSTTIGI+SSLVNKT G+V IFGYD+D+ VEAKKQ+GLVPQEFNFNQ+EKVEQI+VNQAGYYGV R +AK+RAKKYL+ LDLW+KR EP+R LSGGMKRRLMIARALMHEP+LLILDEPTAGVDIELRRSMW FL EIN +GITIILTTHYLEEAE LCRNIGIINRGELVEDTSMKALL KLD ETF+LDL P K++ L+ Sbjct: 28 EEGDFYALLGPNGAGKSTTIGILSSLVNKTQGQVSIFGYDLDSQKVEAKKQIGLVPQEFNFNQFEKVEQIVVNQAGYYGVPRDQAKLRAKKYLSQLDLWDKRHEPARNLSGGMKRRLMIARALMHEPRLLILDEPTAGVDIELRRSMWDFLTEINRQGITIILTTHYLEEAETLCRNIGIINRGELVEDTSMKALLAKLDAETFILDLQPGHKLSTLD 245
BLAST of abc transporter vs. nr
Match: gi|803554126|ref|WP_046074005.1| (ABC transporter ATP-binding protein [Salinivibrio sp. KP-1] >gi|802241784|gb|KKA45349.1| ABC transporter [Salinivibrio sp. KP-1]) HSP 1 Score: 379.793 bits (974), Expect = 7.976e-130 Identity = 179/218 (82.11%), Postives = 198/218 (90.83%), Query Frame = 0 Query: 64 HKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLE 281 +GDFYALLGPNGAGKSTTIGI+SSLVNKT G+V IFGYD+D+ VEAKKQ+GLVPQEFNFNQ+EKVEQI+VNQAGYYGV R +AK+RAKKYL+ LDLW+KR EP+R LSGGMKRRLMIARALMHEP+LLILDEPTAGVDIELRRSMW FL EIN +GITIILTTHYLEEAE LCRNIGIINRGELVEDTSMKALL KLD ETF+LDL P K++ L+ Sbjct: 28 EEGDFYALLGPNGAGKSTTIGILSSLVNKTQGQVSIFGYDLDSQKVEAKKQIGLVPQEFNFNQFEKVEQIVVNQAGYYGVPRDQAKLRAKKYLSQLDLWDKRHEPARNLSGGMKRRLMIARALMHEPRLLILDEPTAGVDIELRRSMWDFLTEINRQGITIILTTHYLEEAETLCRNIGIINRGELVEDTSMKALLAKLDAETFILDLQPGHKLSTLD 245 The following BLAST results are available for this feature:
BLAST of abc transporter vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 13
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BLAST of abc transporter vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of abc transporter vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold312_size212576:46901..48406- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold312_size212576-snap-gene-0.17 ID=maker-scaffold312_size212576-snap-gene-0.17|Name=abc transporter|organism=Tigriopus kingsejongensis|type=gene|length=1506bp|location=Sequence derived from alignment at scaffold312_size212576:46901..48406- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'abc transporter' has the following synonyms
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