abc transporter, maker-scaffold312_size212576-snap-gene-0.17 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000001122 (supercontig:LSalAtl2s:LSalAtl2s118:125434:135666:1 gene:EMLSAG00000001122 transcript:EMLSAT00000001122 description:"maker-LSalAtl2s118-snap-gene-1.28") HSP 1 Score: 53.5286 bits (127), Expect = 2.478e-8 Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 0 Query: 65 KGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQE 121 +G+ + LLG NGAGK+TT +++ +N TSG I GY I ++ ++ LG PQE Sbjct: 453 RGECFGLLGINGAGKTTTFKMLTGDINPTSGDAFINGYSIFNEMGRCRQSLGYCPQE 509
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000003724 (supercontig:LSalAtl2s:LSalAtl2s1:3545780:3558615:1 gene:EMLSAG00000003724 transcript:EMLSAT00000003724 description:"maker-LSalAtl2s1-augustus-gene-35.19") HSP 1 Score: 53.1434 bits (126), Expect = 2.944e-8 Identity = 47/188 (25.00%), Postives = 86/188 (45.74%), Query Frame = 0 Query: 70 ALLGPNGAGKSTTIGIISSLVNKTSGKVKI-----FGYDIDTDLVEAKKQLG---LVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGEL 249 ++G NG+GKST + +I ++ T G+ + FGY + + L ++ ++F + E+ Q+L G++G+ A + + +LSGG K R+ A EP LILDEPT +D+E ++ L + N +IL H M+C+ + + ++G++ Sbjct: 476 CIVGKNGSGKSTLLKLIMEEISVTDGRRIVHRNLKFGYFSQHHVDQLNMNLCPLQIMEKKFRGKKMEECRQML----GHFGISGDLAL-----------------QKTSSLSGGQKSRVAFAVLCGEEPNFLILDEPTNHLDLETIDALGHGLMKYNG---GLILVCHDERLIRMVCQELWVCSKGKI 639
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000000940 (supercontig:LSalAtl2s:LSalAtl2s1166:1016:21423:-1 gene:EMLSAG00000000940 transcript:EMLSAT00000000940 description:"maker-LSalAtl2s1166-snap-gene-0.62") HSP 1 Score: 48.9062 bits (115), Expect = 8.911e-7 Identity = 53/210 (25.24%), Postives = 100/210 (47.62%), Query Frame = 0 Query: 51 GINILDWSFLQRAHKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYD----------IDTDLVEAKKQLGLVP--------QEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDL-WEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNI 241 G ++ + LQ H G Y L+GPNG GK+T + I + + + + + ++T L +K+ L+ QE + E++ ++ ++ G ++AE K A++ L L E ++ + SGG + R+ +ARAL EP LL+LDEPT +D+ + +L+ + T+++ +H + +C +I Sbjct: 201 GKDLFRDAKLQITH-GRRYGLVGPNGHGKTTLLRHIGTRSLQIPPNIDVLICEQEVVANEMSALETVLQSDEKRTALLKECKDLEKKQENGVDVTERLNEV-YDELRAIGADQAEPK--ARRLLAGLGFDKEMQERSTNKFSGGWRMRVSLARALYIEPTLLMLDEPTNHLDLNAVIWLDNYLQNWKK---TLLVVSHDQSFLDNICTDI 403
BLAST of abc transporter vs. SwissProt
Match: gi|399405|sp|P32010.1|DRRA_STRPE (RecName: Full=Daunorubicin/doxorubicin resistance ATP-binding protein DrrA) HSP 1 Score: 129.028 bits (323), Expect = 4.482e-34 Identity = 74/229 (32.31%), Postives = 125/229 (54.59%), Query Frame = 0 Query: 35 TEPIPMAVLAG-IALYVGINILDWSFLQRAHKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKL 262 T+P +G + +Y G +D L G Y +LGPNGAGKSTTI ++++L+ G ++FG+D+ ++ ++++ + Q + ++ + LV G A A+ RA + + L + RD +T SGGM+RRL IA +++ P LL LDEPT G+D R +W ++ + + G T++LTT YL+EA+ L I +I+ G ++ + + L L Sbjct: 3 TQPTRAIETSGLVKVYNGTRAVDGLDLN-VPAGLVYGILGPNGAGKSTTIRMLATLLRPDGGTARVFGHDVTSEPDTVRRRISVTGQYASVDEGLTGTENLVMMGRLQGYSWARARERAAELIDGFGLGDARDRLLKTYSGGMRRRLDIAASIVVTPDLLFLDEPTTGLDPRSRNQVWDIVRALVDAGTTVLLTTQYLDEADQLADRIAVIDHGRVIAEGTTGELKSSL 230
BLAST of abc transporter vs. SwissProt
Match: gi|128473|sp|P08720.1|NODI_RHILV (RecName: Full=Nod factor export ATP-binding protein I; AltName: Full=Nodulation ATP-binding protein I) HSP 1 Score: 128.257 bits (321), Expect = 6.297e-34 Identity = 81/226 (35.84%), Postives = 126/226 (55.75%), Query Frame = 0 Query: 39 PMAV-LAGIALYVGINIL--DWSFLQRAHKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKK 261 P+A+ LAG++ G I+ D SF A G+ + LLGPNGAGKST +I + + + GK+ + G + A+ ++G+V Q N + V + L+ Y+ + E + L L K + LSGGMKRRL +A AL+++P+LLILDEPT G+D R +W L+ + +G TI+LTTH +EEAE LC + ++ G + + AL+++ Sbjct: 10 PVAIDLAGVSKSYGGKIVVNDLSFTIAA--GECFGLLGPNGAGKSTITRMILGMTSPSVGKITVLGAQEPGQVRLARAKIGIVSQFDNLDLEFTVRENLLVYGRYFRMSTREIETVIPSLLEFARLESKANTRVADLSGGMKRRLTLAGALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHIMEEAERLCDRLCVLEAGRKIAEGRPHALIEE 233
BLAST of abc transporter vs. SwissProt
Match: gi|75018032|sp|Q8T6J1.1|ABCA6_DICDI (RecName: Full=ABC transporter A family member 6; AltName: Full=ABC transporter ABCA.6) HSP 1 Score: 133.65 bits (335), Expect = 6.518e-34 Identity = 78/185 (42.16%), Postives = 117/185 (63.24%), Query Frame = 0 Query: 69 YALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQ-EFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVED 252 +ALLGPNG GKSTTIG+++ L++ TSG I GYDI + + + + +G Q + ++Q +E +++ A GVE + A++ T + L EK + P+ +LSGG KR+L + A + K++ LDE T+G+D RR +W FL + +KG TIILTTHYLEEA+ L I II++G+L D Sbjct: 523 HALLGPNGCGKSTTIGMLTGLISPTSGSAFIRGYDITSQMSKIRPYIGCCLQTDIIWSQLTVLEHLVI-YASLKGVEGRNIQREAERMATEVGLAEKMNAPAGSLSGGQKRKLCLGIAFIGRSKIIFLDEVTSGMDPVSRRQVWDFLLKY-KKGKTIILTTHYLEEADYLGDRIAIISQGKLRCD 705 HSP 2 Score: 81.6481 bits (200), Expect = 4.850e-16 Identity = 51/177 (28.81%), Postives = 96/177 (54.24%), Query Frame = 0 Query: 78 GKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYY------GVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGE 248 GKSTT+ ++S + +SG++ I GYD+ T+ +K LG + F Q++ + +L + + G++ ++ + + ++ ++DL + SGG KR++ ++ A++ P + LDE + G D +RR +W + E+ K +IILT+H + E E LC I I+ G+ Sbjct: 1352 GKSTTLSMLSGEIVPSSGEISINGYDVITN---REKALGNISMVF---QFDALISLLSAREHLWLFSRIKGIKESQIENCVEAFIKMVDLTRIANSGCGGYSGGNKRKVSLSMAMLGNPSVCFLDEISCGCDAVVRRQLWDVISELG-KDKSIILTSHSMSEVEALCSRITIMKEGK 1521
BLAST of abc transporter vs. SwissProt
Match: gi|29839546|sp|Q8GNH6.1|NODI_RHIML (RecName: Full=Nod factor export ATP-binding protein I; AltName: Full=Nodulation ATP-binding protein I) HSP 1 Score: 128.642 bits (322), Expect = 6.784e-34 Identity = 71/196 (36.22%), Postives = 108/196 (55.10%), Query Frame = 0 Query: 66 GDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKK 261 G+ + LLGPNGAGKST +I + +G + + G + + A+ +G+VPQ N + V + L+ Y+ + E + L L K D LSGGMKRRL +ARAL+++P+LLILDEPT G+D R +W L+ + +G TI+LTTH +EEAE LC + ++ G + + L+ + Sbjct: 62 GECFGLLGPNGAGKSTITRMILGMTTPATGVITVLGVPVPSRARLARMGIGVVPQFDNLDSEFTVRENLLVFGRYFRMSTREIEAVIPSLLEFARLENKVDARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHIMEEAERLCDRLCVLEAGRKIAEGRPHVLIDE 257
BLAST of abc transporter vs. SwissProt
Match: gi|2492542|sp|P55476.1|NODI_RHISN (RecName: Full=Nod factor export ATP-binding protein I; AltName: Full=Nodulation ATP-binding protein I) HSP 1 Score: 127.487 bits (319), Expect = 1.990e-33 Identity = 70/197 (35.53%), Postives = 108/197 (54.82%), Query Frame = 0 Query: 65 KGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKK 261 G+ + LLGPNGAGKST ++ L G + + G + A+ ++G+VPQ ++ + L+ Y+G+ E + L L K D P LSGGM+RRL +A AL+++P+LLILDEPT G+D R +W L+ + G TI+LTTH++EEA+ LC + +I G + + AL+ + Sbjct: 69 SGECFGLLGPNGAGKSTVSRLVLGLAPPDEGTITVLGEPVPARARLARSRIGVVPQFDTLDREFTARENLLVFGRYFGLHTRELEEAIPPLLDFARLESKADVPVAQLSGGMQRRLTLACALINDPQLLILDEPTTGLDPHARHLIWERLRSLLALGKTILLTTHFMEEADRLCDRLCVIEHGRKIVEGRPHALIDE 265
BLAST of abc transporter vs. nr
Match: gi|515575573|ref|WP_017008346.1| (MULTISPECIES: ABC transporter ATP-binding protein [Enterovibrio] >gi|1067382559|gb|OEE58198.1| ABC transporter [Enterovibrio calviensis FF-85] >gi|1098365199|emb|SFQ31249.1| ABC-2 type transport system ATP-binding protein [Enterovibrio norvegicus DSM 15893]) HSP 1 Score: 437.573 bits (1124), Expect = 1.592e-152 Identity = 211/219 (96.35%), Postives = 217/219 (99.09%), Query Frame = 0 Query: 64 HKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLED 282 +GDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQIL+NQAGYYGVERAEAKVRAKKYL+LLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEIN +GITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVT+LE+ Sbjct: 28 QQGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILLNQAGYYGVERAEAKVRAKKYLSLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINAQGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTHLEN 246
BLAST of abc transporter vs. nr
Match: gi|515581847|ref|WP_017014573.1| (MULTISPECIES: ABC transporter ATP-binding protein [Enterovibrio] >gi|1067488586|gb|OEF57387.1| ABC transporter [Enterovibrio calviensis 1F-211] >gi|1067492510|gb|OEF61120.1| ABC transporter [Enterovibrio calviensis 1F-230] >gi|1326569504|gb|PMH63920.1| ABC transporter [Enterovibrio norvegicus] >gi|1326645894|gb|PMI34528.1| ABC transporter [Enterovibrio norvegicus] >gi|1326648849|gb|PMI37275.1| ABC transporter [Enterovibrio norvegicus] >gi|1327181079|gb|PMN46005.1| ABC transporter [Enterovibrio norvegicus] >gi|1327229301|gb|PMN92977.1| ABC transporter [Enterovibrio norvegicus]) HSP 1 Score: 437.187 bits (1123), Expect = 1.806e-152 Identity = 211/219 (96.35%), Postives = 217/219 (99.09%), Query Frame = 0 Query: 64 HKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLED 282 +GDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQIL+NQAGYYGVERAEAKVRAKKYL+LLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEIN +GITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVT+LE+ Sbjct: 28 QQGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILLNQAGYYGVERAEAKVRAKKYLSLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINAQGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTHLEN 246
BLAST of abc transporter vs. nr
Match: gi|1330119664|ref|WP_102318496.1| (ABC transporter ATP-binding protein [Enterovibrio norvegicus] >gi|1327007141|gb|PML77564.1| ABC transporter [Enterovibrio norvegicus] >gi|1327204231|gb|PMN68554.1| ABC transporter [Enterovibrio norvegicus]) HSP 1 Score: 435.647 bits (1119), Expect = 7.061e-152 Identity = 210/219 (95.89%), Postives = 217/219 (99.09%), Query Frame = 0 Query: 64 HKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLED 282 +GDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQIL+NQAGYYGVERAEAKVRAKKYL+LLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLK+IN +GITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVT+LE+ Sbjct: 28 QQGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILLNQAGYYGVERAEAKVRAKKYLSLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKDINAQGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTHLEN 246
BLAST of abc transporter vs. nr
Match: gi|654555657|ref|WP_028023051.1| (ABC transporter ATP-binding protein [Enterovibrio calviensis]) HSP 1 Score: 434.876 bits (1117), Expect = 1.714e-151 Identity = 209/219 (95.43%), Postives = 216/219 (98.63%), Query Frame = 0 Query: 64 HKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLED 282 +GDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQIL+NQAGYYGVERAEAKVRAKKYL+LLDLWEKRDEPSRTLSGGMKRRLMIARALMHEP+LLILDEPTAGVDIELRRSMWTFLK INE+GITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDS+VT LE+ Sbjct: 28 QQGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILLNQAGYYGVERAEAKVRAKKYLSLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPRLLILDEPTAGVDIELRRSMWTFLKGINEQGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSQVTQLEN 246
BLAST of abc transporter vs. nr
Match: gi|515527478|ref|WP_016960710.1| (ABC transporter ATP-binding protein [Enterovibrio norvegicus] >gi|1067382214|gb|OEE57879.1| ABC transporter [Enterovibrio norvegicus FF-454] >gi|1067395486|gb|OEE70517.1| ABC transporter [Enterovibrio norvegicus FF-33] >gi|1067406190|gb|OEE80099.1| ABC transporter [Enterovibrio norvegicus FF-162]) HSP 1 Score: 432.565 bits (1111), Expect = 1.467e-150 Identity = 208/219 (94.98%), Postives = 216/219 (98.63%), Query Frame = 0 Query: 64 HKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLED 282 +GDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDT LV+AK+QLGLVPQEFNFNQYEKVEQIL+NQAGYYGV+RAEAKVR+KKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINE+GITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVT LE+ Sbjct: 28 QQGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTHLVDAKRQLGLVPQEFNFNQYEKVEQILLNQAGYYGVDRAEAKVRSKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEQGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTKLEN 246
BLAST of abc transporter vs. nr
Match: gi|488493992|ref|WP_002537436.1| (MULTISPECIES: ABC transporter ATP-binding protein [Grimontia] >gi|486373633|gb|EOD80491.1| ABC-type multidrug transport system, ATPase component [Grimontia indica] >gi|808151909|gb|KKD60361.1| ABC transporter [Grimontia sp. AD028]) HSP 1 Score: 412.149 bits (1058), Expect = 1.543e-142 Identity = 197/217 (90.78%), Postives = 209/217 (96.31%), Query Frame = 0 Query: 65 KGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLE 281 +GDFYALLGPNGAGKSTTIGI+SSLVNKTSGKVKIFGYDIDT LVEAKKQ+GLVPQEFNFNQ+EKVEQI+VNQAGYYGVER EAK RAKKYLT LDLWEKR+E +R LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFL+EIN++GITIILTTHYLEEAEMLCRNIGIINRGEL+EDTSMKALLKKLDVETFVLDLAPDS V +LE Sbjct: 29 EGDFYALLGPNGAGKSTTIGIVSSLVNKTSGKVKIFGYDIDTQLVEAKKQIGLVPQEFNFNQFEKVEQIVVNQAGYYGVEREEAKRRAKKYLTQLDLWEKRNESARNLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLQEINKQGITIILTTHYLEEAEMLCRNIGIINRGELIEDTSMKALLKKLDVETFVLDLAPDSSVKSLE 245
BLAST of abc transporter vs. nr
Match: gi|1011847384|ref|WP_062666072.1| (ABC transporter ATP-binding protein [Grimontia celer] >gi|1003043050|emb|CZF83605.1| Daunorubicin/doxorubicin resistance ATP-binding protein DrrA [Grimontia celer]) HSP 1 Score: 411.764 bits (1057), Expect = 1.879e-142 Identity = 196/218 (89.91%), Postives = 209/218 (95.87%), Query Frame = 0 Query: 64 HKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLE 281 +GDFYALLGPNGAGKSTTIGI+SSLVNKTSGKVKIFGYDIDT LVEAKKQ+GLVPQEFNFNQ+EKVEQI+VNQAGYYGVER EAK RAKKYLT LDLWEKR+E +R LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFL+EIN++GITIILTTHYLEEAEMLCRNIGIINRGEL+EDTSMKALLKKLDVETF+LDLAPDS V +LE Sbjct: 28 EEGDFYALLGPNGAGKSTTIGIVSSLVNKTSGKVKIFGYDIDTQLVEAKKQIGLVPQEFNFNQFEKVEQIVVNQAGYYGVEREEAKRRAKKYLTQLDLWEKRNESARNLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLQEINKQGITIILTTHYLEEAEMLCRNIGIINRGELIEDTSMKALLKKLDVETFILDLAPDSSVKSLE 245
BLAST of abc transporter vs. nr
Match: gi|1011888643|ref|WP_062705374.1| (ABC transporter ATP-binding protein [Grimontia marina] >gi|1003051745|emb|CZF78167.1| Daunorubicin/doxorubicin resistance ATP-binding protein DrrA [Grimontia marina]) HSP 1 Score: 409.453 bits (1051), Expect = 1.715e-141 Identity = 195/218 (89.45%), Postives = 209/218 (95.87%), Query Frame = 0 Query: 64 HKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLE 281 +GDFYALLGPNGAGKSTTIGI+SSLVNKTSGKVKIFG+DIDT LVEAKKQ+GLVPQEFNFNQ+EKVEQI+VNQAGYYGVER EAK RA+KYLT LDLWEKR+E +R LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFL+EIN++GITIILTTHYLEEAEMLCRNIGIINRGEL+EDTSMKALLKKLDVETFVLDLAPDS V +LE Sbjct: 28 EEGDFYALLGPNGAGKSTTIGIVSSLVNKTSGKVKIFGFDIDTQLVEAKKQIGLVPQEFNFNQFEKVEQIVVNQAGYYGVEREEAKRRARKYLTQLDLWEKRNESARNLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLQEINKQGITIILTTHYLEEAEMLCRNIGIINRGELIEDTSMKALLKKLDVETFVLDLAPDSSVKSLE 245
BLAST of abc transporter vs. nr
Match: gi|1154843031|ref|WP_078750851.1| (ABC transporter ATP-binding protein [Enterovibrio nigricans] >gi|1152209013|emb|SKA45163.1| ABC-2 type transport system ATP-binding protein [Enterovibrio nigricans DSM 22720]) HSP 1 Score: 406.371 bits (1043), Expect = 2.677e-140 Identity = 191/218 (87.61%), Postives = 208/218 (95.41%), Query Frame = 0 Query: 64 HKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLE 281 +GDFYALLGPNGAGKSTTIGII SLVNKT+G VKIFGYDIDT LVEAK+QLGLVPQEFNFNQYEKVEQI+VNQAGYYGVER EAK RAKKYLT+LDLWEKRD+P++ LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMW+FL+EIN++GITIILTTHYLEEAEMLCRNIGIINRGEL+E+TSMKALL+KLDVETFVLDLAP+S V L+ Sbjct: 28 QQGDFYALLGPNGAGKSTTIGIICSLVNKTAGSVKIFGYDIDTHLVEAKRQLGLVPQEFNFNQYEKVEQIVVNQAGYYGVERLEAKARAKKYLTMLDLWEKRDQPAKALSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWSFLREINQQGITIILTTHYLEEAEMLCRNIGIINRGELIENTSMKALLQKLDVETFVLDLAPNSTVRALD 245
BLAST of abc transporter vs. nr
Match: gi|491644543|ref|WP_005502070.1| (ABC transporter ATP-binding protein [Grimontia hollisae] >gi|262222191|gb|EEY73503.1| ABC-type multidrug transport system ATPase component [Grimontia hollisae CIP 101886] >gi|991861912|gb|AMG30203.1| ABC transporter ATP-binding protein [Grimontia hollisae]) HSP 1 Score: 405.216 bits (1040), Expect = 8.355e-140 Identity = 191/218 (87.61%), Postives = 210/218 (96.33%), Query Frame = 0 Query: 64 HKGDFYALLGPNGAGKSTTIGIISSLVNKTSGKVKIFGYDIDTDLVEAKKQLGLVPQEFNFNQYEKVEQILVNQAGYYGVERAEAKVRAKKYLTLLDLWEKRDEPSRTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLKEINEKGITIILTTHYLEEAEMLCRNIGIINRGELVEDTSMKALLKKLDVETFVLDLAPDSKVTNLE 281 +GDFYALLGPNGAGKSTTIGI+SSLVNKT+GKVKIFGYDIDTDLVEAKKQ+GLVPQEFNFNQ+EKVEQI+VNQAGYYGVER EAK RA+KYL+ LDLW+KR+E +R LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFL++IN++GITIILTTHYLEEAEMLCRNIGIINRGEL+EDTSMKALLKKLDVETF+LDL PDS+V +LE Sbjct: 28 QEGDFYALLGPNGAGKSTTIGILSSLVNKTAGKVKIFGYDIDTDLVEAKKQIGLVPQEFNFNQFEKVEQIVVNQAGYYGVERDEAKRRARKYLSQLDLWDKRNESARNLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLQDINKQGITIILTTHYLEEAEMLCRNIGIINRGELIEDTSMKALLKKLDVETFILDLVPDSRVEHLE 245 The following BLAST results are available for this feature:
BLAST of abc transporter vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 13
Pagesback to top
BLAST of abc transporter vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
Pagesback to top
BLAST of abc transporter vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold312_size212576:46901..48406- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold312_size212576-snap-gene-0.17 ID=maker-scaffold312_size212576-snap-gene-0.17|Name=abc transporter|organism=Tigriopus kingsejongensis|type=gene|length=1506bp|location=Sequence derived from alignment at scaffold312_size212576:46901..48406- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'abc transporter' has the following synonyms
Add to Basket
|