atp-dependent dna helicase, maker-scaffold31_size578364-snap-gene-4.0 (gene) Tigriopus kingsejongensis

Overview


Name	atp-dependent dna helicase
Unique Name	maker-scaffold31_size578364-snap-gene-4.0
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of atp-dependent dna helicase vs. L. salmonis genes
Match: EMLSAG00000001573 (supercontig:LSalAtl2s:LSalAtl2s1271:90201:96916:-1 gene:EMLSAG00000001573 transcript:EMLSAT00000001573 description:"maker-LSalAtl2s1271-augustus-gene-0.23")

HSP 1 Score: 179.104 bits (453), Expect = 4.021e-52
Identity = 94/223 (42.15%), Postives = 128/223 (57.40%), Query Frame = 0

Query:   42 IGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADEN--------------------------------------TQD------------AGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQ-ESNGN 213
            +  F IDEAHCVSQWGHDFRP+Y+ L  L   +P  P +ALTATA                                         T+D            +GI+YCLSRK+ D   E L   G  AL+YHAG+ +++R + Q ++++++  ++ ATIAFGMGIDKPDVR+V H +LPK+IE YYQE+GRAGRDG PSN  L Y+  D+  LR++++ +SN N
Sbjct:  693 LNRFVIDEAHCVSQWGHDFRPDYKLLHKLRSVYPEVPFMALTATATPRVRTDILHQLNMKSPKWFLSSFNRQNLIYEVKPKKGKSITKDIVSMIQKDWMRQSGIIYCLSRKECDKTAEDLTASGIKALSYHAGLKDSERSRVQDQWIKDKVKVVCATIAFGMGIDKPDVRYVMHYSLPKSIEGYYQESGRAGRDGRPSNCILFYSYGDMHRLRKLIEMDSNAN 915

HSP 2 Score: 59.6918 bits (143), Expect = 9.062e-11
Identity = 32/74 (43.24%), Postives = 43/74 (58.11%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALMEDQQCPIGLFAIDEAHCVSQWGHDF---RPEYQALSILA 71
             VLMPTGGGKS+CYQ+P+ ++ G  VVISPL++L+ DQ   +    I   H     G D+   R  Y  L +L 
Sbjct:  591 FVLMPTGGGKSLCYQLPASIQGGVTVVISPLVSLIYDQVSKLNGLGIPADHLS---GDDYGRQRKIYDKLRLLT 661

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BLAST of atp-dependent dna helicase vs. L. salmonis genes
Match: EMLSAG00000003002 (supercontig:LSalAtl2s:LSalAtl2s170:674355:677674:-1 gene:EMLSAG00000003002 transcript:EMLSAT00000003002 description:"maker-LSalAtl2s170-snap-gene-6.11")

HSP 1 Score: 171.785 bits (434), Expect = 1.451e-49
Identity = 107/317 (33.75%), Postives = 139/317 (43.85%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIA------------------------LMEDQQCPIG------------------------------LFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATA------------------------------------------------DENTQD------AGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQE 209
            LV+M TG GKS+CYQ P++      +VISPLI+                        +M D    I                               L A+DEAHCVSQWGHDFR  Y+ L IL + FPN P + LTATA                                                 EN +D      + I+YC +RK+V+ V + L     N L YHAG+S   RKKN + F+ +   ++V T+AFGMGIDK DVR V H   P+++ESYYQE GRAGRDG+ S   + Y+  D    R  L +
Sbjct:   77 LVVMATGYGKSLCYQFPAVYSGKVTLVISPLISLMEDQVAKLRVSNIPSTFLGSGQTMMPDTMSNIKENKYRVVYVTPEYVDTSLDTLSKLLKDRLVLVAVDEAHCVSQWGHDFRSSYRKLGILKQTFPNVPIMGLTATATPEVQKDISKSLSLINPSYFVTSFDRPNLFIEVKSKVAIWRDLSLLMTKENGEDWVFPHGSTIIYCPTRKEVEKVGDVLTSNSVNHLLYHAGLSPKVRKKNHEDFIFDRCSLVVCTVAFGMGIDKSDVRLVVHYGAPRDMESYYQEIGRAGRDGMSSRVRVYYSTTDFSVHRFFLSD 393

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BLAST of atp-dependent dna helicase vs. L. salmonis genes
Match: EMLSAG00000001248 (supercontig:LSalAtl2s:LSalAtl2s1202:153682:156705:1 gene:EMLSAG00000001248 transcript:EMLSAT00000001248 description:"snap_masked-LSalAtl2s1202-processed-gene-0.15")

HSP 1 Score: 108.612 bits (270), Expect = 1.390e-27
Identity = 67/205 (32.68%), Postives = 91/205 (44.39%), Query Frame = 0

Query:   42 IGLFAIDEAHCVSQWGHDFRPEY-----------QALSILAKEFPNTPRIALTATADENTQDAG-----------------------------------------IVYCLSRKKVDDVTEFLRDQGRN---------ALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRD 185
            +G   IDEAHC+SQW H+FRP Y           +A +IL      T +   T          G                                         I+YC  R++ + V   +R + R          A ++HAG+S+A+RK+    F+  +  IIVATIAFGMGI+K D+R V H N+P  +ESY QE GRAGRD
Sbjct:  390 LGFVCIDEAHCMSQWSHNFRPAYFQLGGAIRESLKATTILGLXATATEKTITTIAERLQVDSEGGIIKGTVLRKNLLMSVSKDFRRDEALIEMLNSEKFSALGSIIIYCTRREECERVAAIIRTRRRGENSSKNNIIASSFHAGLSHAKRKRIYNDFISGKLKIIVATIAFGMGINKSDIRGVVHYNMPSTLESYVQEIGRAGRD 594

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BLAST of atp-dependent dna helicase vs. L. salmonis genes
Match: EMLSAG00000001574 (supercontig:LSalAtl2s:LSalAtl2s1271:98605:106214:1 gene:EMLSAG00000001574 transcript:EMLSAT00000001574 description:"maker-LSalAtl2s1271-augustus-gene-0.21")

HSP 1 Score: 100.138 bits (248), Expect = 1.404e-24
Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 0

Query:   94 GIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPS 189
            GI+YC +R     +   L  +G   LAYH G+ +++R + Q+ +   +  +I ATI+FGMG+DK  VRFVAH ++P+ I  YYQE+GRAGRDG PS
Sbjct:  236 GIIYCRTRDGTLQIASQLTKRGIPTLAYHGGLKDSERSRVQESWADGKVPVIAATISFGMGVDKATVRFVAHWSVPQTIAGYYQESGRAGRDGKPS 331

HSP 2 Score: 75.485 bits (184), Expect = 3.622e-16
Identity = 44/117 (37.61%), Postives = 54/117 (46.15%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALMED--QQCP-----------------------------IGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATA 86
             V MPTG GKS+ Y +P +L     + I     ++ D   +CP                             +G F IDEAHCVSQWGHDFRP+Y  L  L K    T  +ALTATA
Sbjct:   48 FVSMPTGSGKSLVYXLPGVLLPKGRITIVERKRVLRDIHAKCPDTRFLYVTPEQCATNTFKSILEKLVKFNVLGYFVIDEAHCVSQWGHDFRPDYLKLGQLRKIINKTRVLALTATA 164

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BLAST of atp-dependent dna helicase vs. L. salmonis genes
Match: EMLSAG00000005110 (supercontig:LSalAtl2s:LSalAtl2s26:913218:916036:-1 gene:EMLSAG00000005110 transcript:EMLSAT00000005110 description:"maker-LSalAtl2s26-augustus-gene-8.40")

HSP 1 Score: 63.1586 bits (152), Expect = 6.297e-12
Identity = 36/120 (30.00%), Postives = 62/120 (51.67%), Query Frame = 0

Query:   95 IVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRD---GLPSNAWLNYNLNDVITLRQMLQESN 211
            +V+  +RK  D + E+L  +G    + H   +  +R+   +RF      I+VAT     G+D P+V+ V + +LP ++E Y    GR GR    GL ++ + + N N    L +++ ESN
Sbjct:  450 LVFVETRKGADQLDEYLYKEGFPVTSIHGDRTQREREDALRRFRSGNTPILVATAVAARGLDIPNVKHVINFDLPSDVEEYVHRIGRTGRMGNLGLATSFFNDRNRNLTKDLVELIVESN 569

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BLAST of atp-dependent dna helicase vs. L. salmonis genes
Match: EMLSAG00000007141 (supercontig:LSalAtl2s:LSalAtl2s402:374905:376772:1 gene:EMLSAG00000007141 transcript:EMLSAT00000007141 description:"maker-LSalAtl2s402-augustus-gene-4.12")

HSP 1 Score: 59.3066 bits (142), Expect = 9.710e-11
Identity = 34/129 (26.36%), Postives = 64/129 (49.61%), Query Frame = 0

Query:   87 DENTQDAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQESNGNEV 215
            D  T    +++C +++KVD +TE +R+      + H  M   +R    + F   ++ +++ T  +  GID   V  V + +LP N E Y    GR+GR G    A +N+  ND I + + +++    ++
Sbjct:  263 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA-INFVKNDDIRILRDIEQYYSTQI 390

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BLAST of atp-dependent dna helicase vs. L. salmonis genes
Match: EMLSAG00000010426 (supercontig:LSalAtl2s:LSalAtl2s690:265412:268192:-1 gene:EMLSAG00000010426 transcript:EMLSAT00000010426 description:"maker-LSalAtl2s690-augustus-gene-3.24")

HSP 1 Score: 58.5362 bits (140), Expect = 2.375e-10
Identity = 28/66 (42.42%), Postives = 35/66 (53.03%), Query Frame = 0

Query:  119 LAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGR 184
            L  HA M   QR KN +RF Q E  I++AT     G+D P V  V H  +P+  ESY   +GR  R
Sbjct:  543 LGLHAQMHQKQRLKNLERFTQNENSILIATDVAARGLDIPHVEHVVHYQVPRTSESYIHRSGRTAR 608

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BLAST of atp-dependent dna helicase vs. L. salmonis genes
Match: EMLSAG00000011189 (supercontig:LSalAtl2s:LSalAtl2s760:470421:474651:1 gene:EMLSAG00000011189 transcript:EMLSAT00000011189 description:"maker-LSalAtl2s760-augustus-gene-3.33")

HSP 1 Score: 53.5286 bits (127), Expect = 1.182e-8
Identity = 27/98 (27.55%), Postives = 44/98 (44.90%), Query Frame = 0

Query:   95 IVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAW 192
            +++  +++K D++T  +R  G  A+  H      +R      F      I+ AT     G+D  DV+FV + + P N E Y    GR GR      A+
Sbjct:  366 LIFVETKRKADELTRLMRRDGYPAMCIHGDKQQKERDWVLGEFKHGATTILXATDVAARGLDVDDVKFVINYDYPNNSEDYIHRIGRTGRKDRTGTAY 463

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BLAST of atp-dependent dna helicase vs. L. salmonis genes
Match: EMLSAG00000012740 (supercontig:LSalAtl2s:LSalAtl2s967:89676:95604:1 gene:EMLSAG00000012740 transcript:EMLSAT00000012740 description:"augustus_masked-LSalAtl2s967-processed-gene-0.13")

HSP 1 Score: 52.7582 bits (125), Expect = 1.875e-8
Identity = 37/138 (26.81%), Postives = 62/138 (44.93%), Query Frame = 0

Query:   81 ALTATADENTQDAGIVYCLSRKKVDDVTEFLRDQGR-NALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQ--ESNGNEV 215
            ALT   ++  +   +++    ++ D++ E L  Q +  A   H+  S  QR+   + F      +++ T     GID   V  V + + P +  SY    GR GR G P  A   +  +D + LR + Q   S+GN V
Sbjct:  291 ALTNLINDGIKPPVLIFVQDFERADELKEILTKQKKIKAEVIHSHRSLLQREDAIKTFRAGRTWVLICTELMSRGIDVKGVNLVINYDFPPSTVSYIHRVGRTGRAGRPGRAVTFFTDDDKVLLRSIAQIVSSSGNNV 428

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BLAST of atp-dependent dna helicase vs. L. salmonis genes
Match: EMLSAG00000004918 (supercontig:LSalAtl2s:LSalAtl2s259:1039310:1040989:-1 gene:EMLSAG00000004918 transcript:EMLSAT00000004918 description:"maker-LSalAtl2s259-augustus-gene-10.16")

HSP 1 Score: 52.7582 bits (125), Expect = 1.942e-8
Identity = 49/204 (24.02%), Postives = 85/204 (41.67%), Query Frame = 0

Query:   36 EDQQCPIGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIA-LTATADENTQDAGI---------------VYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVI---TLRQMLQESNGN---EVYK 217
            E Q C   LF+      + +  H+F      ++I +++      +  +    DE ++D  I               ++ L +++ D +   L+ +  N    H   S   R +  + F   +  I++AT     G+D PDV +V + + P  IE Y    GR GR G    A   ++L D      L  +L+ESN +   E+YK
Sbjct:  289 ERQTC---LFSATWPDSIRKLAHEFLKSPIKVTIGSEDLAAGKTVTQIVEVVDERSRDGKIKGLLNKYHKKKNRILIFVLYKREADRLWNSLKHEW-NCTTIHGDKSQDARIQAVENFKSGKIPILIATDVAARGLDIPDVEYVLNYSFPLTIEDYVHRIGRTGRAGKSGIAHTFFHLGDKARAGELVNVLKESNQDVPPEMYK 488

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BLAST of atp-dependent dna helicase vs. SwissProt
Match: gi|19859341|sp|P40724.3|RECQ_SALTY (RecName: Full=ATP-dependent DNA helicase RecQ)

HSP 1 Score: 223.016 bits (567), Expect = 2.687e-68
Identity = 128/317 (40.38%), Postives = 168/317 (53.00%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALME----------------------DQQ------CPIG---------------------------LFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENTQ-----------------------------------------------DAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQESNGNEV 215
            LV+MPTGGGKS+CYQIP+LL +G  VV+SPLI+LM+                      +QQ      C  G                           L A+DEAHC+SQWGHDFRPEY AL  L + FP  P +ALTATAD+ T+                                                +GI+YC SR KV+D    L+ +G +A AYHAG+ NA R   Q++F +++  I+VAT+AFGMGI+KP+VRFV H ++P+NIESYYQETGRAGRDGLP+ A L Y+  D+  LR+ L+E    ++
Sbjct:   44 LVVMPTGGGKSLCYQIPALLLDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLMLDNFLDHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQL 360

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BLAST of atp-dependent dna helicase vs. SwissProt
Match: gi|54041622|sp|P15043.5|RECQ_ECOLI (RecName: Full=ATP-dependent DNA helicase RecQ)

HSP 1 Score: 221.476 bits (563), Expect = 1.052e-67
Identity = 127/312 (40.71%), Postives = 164/312 (52.56%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALME----------------------DQQ------CPIG---------------------------LFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENTQD-----------------------------------------------AGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQES 210
            LV+MPTGGGKS+CYQIP+LL  G  VV+SPLI+LM+                      +QQ      C  G                           L A+DEAHC+SQWGHDFRPEY AL  L + FP  P +ALTATAD+ T+                                                +GI+YC SR KV+D    L+ +G +A AYHAG+ N  R   Q++F +++  I+VAT+AFGMGI+KP+VRFV H ++P+NIESYYQETGRAGRDGLP+ A L Y+  D+  LR+ L+E 
Sbjct:   44 LVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEK 355

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BLAST of atp-dependent dna helicase vs. SwissProt
Match: gi|18202817|sp|Q9CL21.1|RECQ_PASMU (RecName: Full=ATP-dependent DNA helicase RecQ)

HSP 1 Score: 208.764 bits (530), Expect = 8.307e-63
Identity = 122/311 (39.23%), Postives = 156/311 (50.16%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALM------------------------EDQQ-------------------------------CPIGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENTQD-----------------------------------------------AGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQE 209
            LV+M TG GKS+CYQIP+L  EG  +VISPLI+LM                        E QQ                               C +   AIDEAHC+SQWGHDFRPEY  L  L   FP+ P +ALTATAD  T+                                                +GI+YC SR KV+ + E LR++G +A AYHAG+  +QR++ Q+ F ++   ++VATIAFGMGI+K +VRFV H +LP++IESYYQETGRAGRD LP+ A L Y   D   L ++L E
Sbjct:   57 LVIMATGNGKSLCYQIPALCFEGLTLVISPLISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSGTLKLLYVSPEKVMTTSFFHLISHCKVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFPHAPIMALTATADHATRQDILRHLNLQSPHVYIGSFDRPNIRYTLVEKFKPMEQLCRFVLGQKGKSGIIYCNSRSKVERIAESLRNKGVSAQAYHAGLETSQREQVQRAFQRDNVQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILLE 367

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BLAST of atp-dependent dna helicase vs. SwissProt
Match: gi|2500112|sp|P71359.1|RECQ_HAEIN (RecName: Full=ATP-dependent DNA helicase RecQ)

HSP 1 Score: 184.111 bits (466), Expect = 1.231e-53
Identity = 98/215 (45.58%), Postives = 124/215 (57.67%), Query Frame = 0

Query:   42 IGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENTQ-----------------------------------------------DAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQE 209
            +   AIDEAHC+SQWGHDFRPEY  L  L   FP+ P +ALTATAD  TQ                                                +GI+YC SR KV+ + E LR++G +A AYHAGM  A R++ QQ F ++   ++VATIAFGMGI+K +VRFVAH +LP++IESYYQETGRAGRD LP+ A L Y   D   L+++L E
Sbjct:  143 VCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLE 357

HSP 2 Score: 56.9954 bits (136), Expect = 1.859e-8
Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALMEDQ 38
            LV+M TG GKS+CYQIP+L  +G  +VISPLI+LM+DQ
Sbjct:   47 LVVMATGNGKSLCYQIPALCFDGLTLVISPLISLMKDQ 84

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BLAST of atp-dependent dna helicase vs. SwissProt
Match: gi|17366056|sp|Q9DEY9.1|BLM_XENLA (RecName: Full=Bloom syndrome protein homolog; Short=xBLM; AltName: Full=RecQ helicase homolog)

HSP 1 Score: 181.415 bits (459), Expect = 2.388e-51
Identity = 97/241 (40.25%), Postives = 142/241 (58.92%), Query Frame = 0

Query:   31 LIALMED--QQCPIGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATAD--------------------------------------------------ENTQDAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFL-QEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQ-ESNGNEVYK 217
            LI+ ME+  ++  +  F IDEAHCVSQWGHDFRP+Y+ L++L ++F + P +ALTATA+                                                   +  D+GI+YCLSR + D + + L+ +G  ALAYHAG++++ R   Q +++ Q++  +I ATIAFGMGIDKPDVR+V H +LPK++E YYQE+GRAGRDG  S+  L Y+ +DV  +R+++Q E +GN   K
Sbjct:  728 LISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQSVPMMALTATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLPKKPKRVALDCVEWIKKHHPNDSGIIYCLSRHECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLIQMEKDGNSHTK 968

HSP 2 Score: 55.0694 bits (131), Expect = 9.789e-8
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALMEDQ 38
             +LMPTGGGKS+CYQ+P  +  G  +VISPL +L+ DQ
Sbjct:  638 FILMPTGGGKSLCYQLPGCISPGVTIVISPLRSLIVDQ 675

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BLAST of atp-dependent dna helicase vs. SwissProt
Match: gi|1705486|sp|P54132.1|BLM_HUMAN (RecName: Full=Bloom syndrome protein; AltName: Full=DNA helicase, RecQ-like type 2; Short=RecQ2; AltName: Full=RecQ protein-like 3)

HSP 1 Score: 180.259 bits (456), Expect = 5.557e-51
Identity = 96/237 (40.51%), Postives = 140/237 (59.07%), Query Frame = 0

Query:   31 LIALMED--QQCPIGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENTQ--------------------------------------------------DAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAI-IIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQM-LQESNGN 213
            LI+ +E+  ++  +  F IDEAHCVSQWGHDFR +Y+ +++L ++FP+ P +ALTATA+   Q                                                  D+GI+YCLSR++ D + + L+  G  ALAYHAG+S++ R + QQ+++ ++   +I ATIAFGMGIDKPDVRFV H +LPK++E YYQE+GRAGRDG  S+  L Y  +DV  L+++ + E +GN
Sbjct:  776 LISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGN 1012

HSP 2 Score: 56.225 bits (134), Expect = 4.792e-8
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALMEDQ 38
             +LMPTGGGKS+CYQ+P+ +  G  VVISPL +L+ DQ
Sbjct:  686 FILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQ 723

[Close]

BLAST of atp-dependent dna helicase vs. SwissProt
Match: gi|5921178|sp|O88700.1|BLM_MOUSE (RecName: Full=Bloom syndrome protein homolog; Short=mBLM; AltName: Full=RecQ helicase homolog)

HSP 1 Score: 178.333 bits (451), Expect = 2.458e-50
Identity = 96/237 (40.51%), Postives = 140/237 (59.07%), Query Frame = 0

Query:   31 LIALMED--QQCPIGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENTQ--------------------------------------------------DAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFL-QEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQM-LQESNGN 213
            LI+ +E+  ++  +  F IDEAHCVSQWGHDFR +Y+ +++L ++FP+ P +ALTATA+   Q                                                  D+GI+YCLSR++ D + + L+ +G  ALAYHAG+S++ R + Q +++ Q+   +I ATIAFGMGIDKPDVRFV H +LPK++E YYQE+GRAGRDG  S+  L Y  +DV  L+++ + E +GN
Sbjct:  784 LISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEKDGN 1020

HSP 2 Score: 55.8398 bits (133), Expect = 5.884e-8
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALMEDQQCPIGLFAI 47
             +LMPTGGGKS+CYQ+P+ +  G  +VISPL +L+ DQ   +  F I
Sbjct:  694 FILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVDQVQKLTSFDI 740

[Close]

BLAST of atp-dependent dna helicase vs. SwissProt
Match: gi|1248281079|sp|Q9I920.2|BLM_CHICK (RecName: Full=Bloom syndrome protein homolog; AltName: Full=RecQ helicase homolog)

HSP 1 Score: 177.563 bits (449), Expect = 4.943e-50
Identity = 95/224 (42.41%), Postives = 129/224 (57.59%), Query Frame = 0

Query:   42 IGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENTQ--------------------------------------------------DAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAI-IIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQM-LQESNGN 213
            +  F IDEAHCVSQWGHDFR +Y+ L++L K+F + P +ALTATA+   Q                                                  D+GI+YCLSR + D     L+ +G  ALAYHAG++++ R   Q++++ +E   +I ATIAFGMGIDKPDVR+V H +LPK+IE YYQE+GRAGRDG  S+  L Y+ +DV  LR++ L E +GN
Sbjct:  560 LARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGN 783

HSP 2 Score: 55.0694 bits (131), Expect = 9.630e-8
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALMEDQ 38
             +LMPTGGGKS+CYQ+P+ +  G  VVISPL +L+ DQ
Sbjct:  457 FILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQ 494

[Close]

BLAST of atp-dependent dna helicase vs. SwissProt
Match: gi|17366114|sp|Q9VGI8.1|BLM_DROME (RecName: Full=Bloom syndrome protein homolog; Short=Dmblm; AltName: Full=Bloom syndrome helicase ortholog; AltName: Full=Mutagen-sensitive protein 309; AltName: Full=RecQ helicase homolog)

HSP 1 Score: 176.022 bits (445), Expect = 1.504e-49
Identity = 92/216 (42.59%), Postives = 125/216 (57.87%), Query Frame = 0

Query:   42 IGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIAL--TAT--------ADENTQD----------------------------------------AGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQML 207
            I  F IDEAHCVSQWGHDFRP+Y+ L +L K FPN P IAL  TAT        A  N ++                                        +GI+YCLSRK+ D+ ++ +   G  A++YHAG+++  R+  Q+ +L  +  +I AT+AFGMGIDKPDVRFV H +LPK+IE YYQE GRAGRDG  ++  L YN +D++ +++ML
Sbjct:  859 ISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGVSTLDDISRYIRSKPQHFSGIIYCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKML 1074

HSP 2 Score: 60.4622 bits (145), Expect = 1.495e-9
Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALMEDQ 38
             VLMPTGGGKS+CYQ+P++L EG  +VISPL +L+ DQ
Sbjct:  756 FVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFDQ 793

[Close]

BLAST of atp-dependent dna helicase vs. SwissProt
Match: gi|28201770|sp|O18017.2|BLM_CAEEL (RecName: Full=Bloom syndrome protein homolog; AltName: Full=High incidence of males protein 6; AltName: Full=RecQ helicase homolog)

HSP 1 Score: 174.481 bits (441), Expect = 5.699e-49
Identity = 96/221 (43.44%), Postives = 125/221 (56.56%), Query Frame = 0

Query:   42 IGLFAIDEAHCVSQWGHDFRPEYQALSILAKEF--PNTPRIALTATAD-------------ENTQ------------------------------------DAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQESN 211
            +  F IDEAHCVSQWGHDFRP+Y  LS L +++  P  P IALTATA              +N++                                     +GIVYCLSRK+ + V   L   G +A  YHAG+++  R   Q+ ++  +  +I ATIAFGMGIDKPDVRFV H +LPK+IE YYQETGRAGRDG+PS   + Y+ +D I LR+M++E N
Sbjct:  369 LARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQNSKLFISSFVRDNLKYDLIPKAARSLINVVEKMKQLYPGKSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEEGN 589

HSP 2 Score: 56.9954 bits (136), Expect = 2.565e-8
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALMEDQQ 39
             VLMPTG GKS+CYQ+P+++  G  VV+SPL +L+EDQ+
Sbjct:  266 FVLMPTGAGKSLCYQLPAVILPGVTVVVSPLRSLIEDQK 304

[Close]

BLAST of atp-dependent dna helicase vs. nr
Match: gi|749463481|dbj|GAM68439.1| (ATP-dependent DNA helicase recQ [Vibrio sp. JCM 19236])

HSP 1 Score: 301.982 bits (772), Expect = 2.822e-97
Identity = 160/320 (50.00%), Postives = 187/320 (58.44%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALM--------------------EDQ-----------------------------------QCPIGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENT------------------------------------------------QDAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQESNGNEVYK 217
            L LMPTGGGKS+CYQIP+++R G G+V+SPLIALM                    +DQ                                   QC I LFAIDEAHCVSQWGHDFRPEYQ LS+L + FP+TPRIALTATAD+ T                                                +DAGIVYCLSRKKV++  ++L DQGR AL YHAGMS+  R  NQQRFL+E+ IIIVAT+AFGMGIDKPDVRFVAHL+LPK+IESYYQETGRAGRDG  SNAW+ Y + DV+  RQM+  S G+E YK
Sbjct:   36 LTLMPTGGGKSLCYQIPAIVRPGVGIVVSPLIALMKDQVDTLQQAGVSAAYLNSTQDQYEQMQIEDMLLQGELQLLYVAPERLMMERILNLLAQCQISLFAIDEAHCVSQWGHDFRPEYQQLSVLQQRFPSTPRIALTATADQRTKEEIISQLGLEQARIFVHSFDRPNIRYHVGEMSNAKKDLWQFISSHHAEDAGIVYCLSRKKVEETAKWLNDQGRTALPYHAGMSSELRNTNQQRFLREDGIIIVATVAFGMGIDKPDVRFVAHLSLPKSIESYYQETGRAGRDGEASNAWMAYGMQDVVLQRQMVANSEGSEAYK 355

[Close]

BLAST of atp-dependent dna helicase vs. nr
Match: gi|749449760|dbj|GAM75532.1| (ATP-dependent DNA helicase recQ [Vibrio ishigakensis])

HSP 1 Score: 301.597 bits (771), Expect = 1.496e-96
Identity = 160/320 (50.00%), Postives = 186/320 (58.13%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALM--------------------EDQ-----------------------------------QCPIGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENT------------------------------------------------QDAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQESNGNEVYK 217
            L LMPTGGGKS+CYQIP+++R G G+VISPLIALM                    +DQ                                   QC I LFAIDE HCVSQWGHDFRPEYQ LS+L + FP+TPRIALTATAD+ T                                                +DAGIVYCLSRKKV++  ++L DQGR AL YHAGMS+  R  NQQRFL+E+ IIIVAT+AFGMGIDKPDVRFVAHL+LPK+IESYYQETGRAGRDG  SNAW+ Y + DV+  RQM+  S G+E YK
Sbjct:   36 LTLMPTGGGKSLCYQIPAIVRPGVGIVISPLIALMKDQVDTLQQAGVSAAYLNSTQDQYEQMQIEDMLMQGELQLLYVAPERLMMERTLNLLAQCQISLFAIDEVHCVSQWGHDFRPEYQQLSVLQQRFPSTPRIALTATADQRTKEEIISQLGLEQARIFVHSFDRPNIRYHVGEMSNAKKDLWQFISSHHAEDAGIVYCLSRKKVEETAKWLNDQGRTALPYHAGMSSELRNTNQQRFLREDGIIIVATVAFGMGIDKPDVRFVAHLSLPKSIESYYQETGRAGRDGEASNAWMAYGMQDVVLQRQMVANSEGSEAYK 355

[Close]

BLAST of atp-dependent dna helicase vs. nr
Match: gi|749454070|dbj|GAM64738.1| (ATP-dependent DNA helicase recQ [Vibrio ishigakensis])

HSP 1 Score: 302.753 bits (774), Expect = 1.615e-96
Identity = 159/320 (49.69%), Postives = 187/320 (58.44%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALM--------------------EDQ-----------------------------------QCPIGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENT------------------------------------------------QDAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQESNGNEVYK 217
            L LMPTGGGKS+CYQIP+++R G G+V+SPLIALM                    +DQ                                   QC + LFAIDEAHCVSQWGHDFRPEYQ LS+L + FP+TPRIALTATAD+ T                                                +DAGIVYCLSRKKV++  ++L DQGR AL YHAGMS+  R  NQQRFL+E+ IIIVAT+AFGMGIDKPDVRFVAHL+LPK+IESYYQETGRAGRDG  SNAW+ Y + DV+  RQM+  S G+E YK
Sbjct:   36 LTLMPTGGGKSLCYQIPAIVRPGVGIVVSPLIALMKDQVDTLQQAGVSAAYLNSTQDQYEQMQIEDMLLQGELQLLYVAPERLMMERTLNLLAQCQLSLFAIDEAHCVSQWGHDFRPEYQQLSVLQQRFPSTPRIALTATADQRTKEEIISQLGLEQARVFVHSFDRPNIRYHVGEMSNAKKDLWQFISSHHAEDAGIVYCLSRKKVEETAKWLNDQGRTALPYHAGMSSELRNTNQQRFLREDGIIIVATVAFGMGIDKPDVRFVAHLSLPKSIESYYQETGRAGRDGEASNAWMAYGMQDVVLQRQMVANSEGSEAYK 355

[Close]

BLAST of atp-dependent dna helicase vs. nr
Match: gi|495392600|ref|WP_008117301.1| (DNA helicase RecQ [Herbaspirillum sp. YR522] >gi|398214251|gb|EJN00833.1| ATP-dependent DNA helicase RecQ [Herbaspirillum sp. YR522])

HSP 1 Score: 302.368 bits (773), Expect = 2.098e-96
Identity = 159/320 (49.69%), Postives = 185/320 (57.81%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALMED------------------------------------------------QQC-------PIGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATAD------------------------------------------------ENTQDAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQESNGNEVYK 217
            LVLMPTGGGKS+CYQ+PSLLREG GVV+SPLIALM+D                                                Q+C        IGLFAIDEAHCVSQWGHDFRPEY  LSIL + FP  PRIALTATAD                                                E+ +DAGIVYCLSRKKVD+  EFLR +G NALAYHAGM    R  NQ RFL+E+ I++VAT+AFGMGIDKPDVRFV HL+LPK+IE YYQETGR GRDGLP++AW+ Y L DV+  R+M++ES  +E +K
Sbjct:   48 LVLMPTGGGKSLCYQVPSLLREGVGVVVSPLIALMQDQVDALDEVGVRAAFLNSSQSFDEAMQIERRLRQGDLDVLYVAPERLMTQRCLDLLDSIKIGLFAIDEAHCVSQWGHDFRPEYIKLSILHERFPQVPRIALTATADAQTRAEIVHRLQLEQAQQFVSSFDRPNIRYQIVEKGNGRKQLLDFIKSEHAEDAGIVYCLSRKKVDETAEFLRSEGLNALAYHAGMDAQARSTNQSRFLREDKIVMVATVAFGMGIDKPDVRFVCHLDLPKSIEGYYQETGRGGRDGLPADAWMAYGLQDVVQQRRMIEESEADEDFK 367

[Close]

BLAST of atp-dependent dna helicase vs. nr
Match: gi|749466011|dbj|GAM59545.1| (ATP-dependent DNA helicase recQ [Vibrio ishigakensis])

HSP 1 Score: 303.138 bits (775), Expect = 1.011e-95
Identity = 159/320 (49.69%), Postives = 187/320 (58.44%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALM--------------------EDQ-----------------------------------QCPIGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENT------------------------------------------------QDAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQESNGNEVYK 217
            L LMPTGGGKS+CYQIP+++R G G+V+SPLIALM                    +DQ                                   QC + LFAIDEAHCVSQWGHDFRPEYQ LS+L + FP+TPRIALTATAD+ T                                                +DAGIVYCLSRKKV++  ++L DQGR AL YHAGMS+  R  NQQRFL+E+ IIIVAT+AFGMGIDKPDVRFVAHL+LPK+IESYYQETGRAGRDG  SNAW+ Y + DV+  RQM+  S G+E YK
Sbjct:   36 LTLMPTGGGKSLCYQIPAIVRPGVGIVVSPLIALMKDQVDTLQQAGVSAAYLNSTQDQYEQMQIEDMLLQGELQLLYVAPERLMMERTLNLLAQCQLSLFAIDEAHCVSQWGHDFRPEYQQLSVLQQRFPSTPRIALTATADQRTKEEIISQLGLEQARVFVHSFDRPNIRYHVGEMSNAKKDLWQFISSDHAEDAGIVYCLSRKKVEETAKWLNDQGRTALPYHAGMSSELRNTNQQRFLREDGIIIVATVAFGMGIDKPDVRFVAHLSLPKSIESYYQETGRAGRDGEASNAWMAYGMQDVVLQRQMVANSEGSEAYK 355

[Close]

BLAST of atp-dependent dna helicase vs. nr
Match: gi|494243694|ref|WP_007144459.1| (DNA helicase RecQ [Methylophaga aminisulfidivorans] >gi|333788691|gb|EGL54573.1| superfamily II DNA helicase [Methylophaga aminisulfidivorans MP])

HSP 1 Score: 302.368 bits (773), Expect = 1.924e-95
Identity = 165/320 (51.56%), Postives = 191/320 (59.69%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPL--------IALME--------------------DQQ---------------------------CPIGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENTQ------------------------------------------------DAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQESNGNEVYK 217
            LVLMPTGGGKS+CYQIP+L+R GTG+V+SPL        +AL E                    +QQ                             I LFAIDEAHCVSQWGHDFRPEYQ L  L + FPN PRIALTATAD+ T+                                                DAGIVYCLSRKKV+ + E+L++QGR AL YHAG+SN  R K+QQRFL+EEA+IIVATIAFGMGIDKPDVRFVAHLNLPKNIE+YYQETGRAGRDGLP+NAW+ Y L DVITLRQ +Q+SN  ++ K
Sbjct:   39 LVLMPTGGGKSLCYQIPALIRPGTGIVVSPLIALMQDQVVALNELGVKAAFLNSSLSASEAYSVEQQLEDGLIDVLYIAPERLLNERTISLLSRVTISLFAIDEAHCVSQWGHDFRPEYQRLRQLHERFPNVPRIALTATADKRTRQEIIEQLNLQQANVYLNSFDRHNIFYAITEASHAKQQLWQFIEEHHANDAGIVYCLSRKKVEAIAEWLQEQGRVALPYHAGLSNEVRAKHQQRFLREEAVIIVATIAFGMGIDKPDVRFVAHLNLPKNIEAYYQETGRAGRDGLPANAWMAYGLQDVITLRQFMQDSNAPDMIK 358

[Close]

BLAST of atp-dependent dna helicase vs. nr
Match: gi|1270439235|gb|PHS31805.1| (DNA helicase RecQ [Methylophaga sp.])

HSP 1 Score: 298.516 bits (763), Expect = 5.493e-94
Identity = 159/320 (49.69%), Postives = 186/320 (58.13%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIA-----------------------------LMEDQ--------------------------QCPIGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENTQD------------------------------------------------AGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQESNGNEVYK 217
            LVLMPTGGGKS+CYQ+P+L+R+GT +V+SPLIA                             L+E Q                          QC I LFAIDEAHCVSQWGHDFRP YQ L +L+  +P  PRIALTATAD+ T+D                                                AGIVYCLSRKKV+   E+L DQGR AL YHAG+    R++NQQRFL+EE +IIVATIAFGMGIDKPDVRFVAHLNLPK+IE+YYQETGRAGRDG P+NAW+ Y L DVITLRQ  Q+SN +E +K
Sbjct:   35 LVLMPTGGGKSLCYQLPALVRDGTAIVVSPLIALMQDQVDALQQLGIKAAFLNSSQRVGEARLIEQQLRDGELDLLYVAPERLLMSSMLDLLDQCQIALFAIDEAHCVSQWGHDFRPNYQKLKLLSARYPTVPRIALTATADQRTRDEIIAQLQLGDAEVFVNSFDRPNIHYAISEGNNPKQRLWKFIEQNHPNDAGIVYCLSRKKVEQTAEWLADQGRLALPYHAGLPQEVRQQNQQRFLREEGVIIVATIAFGMGIDKPDVRFVAHLNLPKSIEAYYQETGRAGRDGEPANAWMAYGLQDVITLRQFTQDSNADEQHK 354

[Close]

BLAST of atp-dependent dna helicase vs. nr
Match: gi|1180991087|ref|WP_084405061.1| (DNA helicase RecQ [Aliagarivorans taiwanensis])

HSP 1 Score: 298.901 bits (764), Expect = 1.182e-93
Identity = 155/320 (48.44%), Postives = 186/320 (58.13%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIA--------------------------------------------------LMED-----QQCPIGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENT------------------------------------------------QDAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQESNGNEVYK 217
            L LMPTGGGKS+CYQIP+++R G G+V+SPLIA                                                  +ME       QC I LFAIDEAHCVSQWGHDFRPEYQ LS+L + FPN PRIALTATAD+ T                                                +DAG++YCLSRKKV+D  E+L  QGR AL YHAGM + +R ++QQRFL+EE +IIVATIAFGMGIDKPDVRFVAHL+LPK+IESYYQETGRAGRDG P+NAW+ Y + D++  +QM+Q S G+E YK
Sbjct:   80 LTLMPTGGGKSLCYQIPAMVRPGVGIVVSPLIALMKDQVDALHQVGVSAAYLNSTLSSMEQREVEDWLLQGQLQLLYVAPERLMMESTLQLLSQCQISLFAIDEAHCVSQWGHDFRPEYQQLSVLHQRFPNVPRIALTATADQRTKQEIITQLGLGEAQVFVHSFDRSNIRYHVSEPSNAKNELWNFLSEHHPEDAGVIYCLSRKKVEDTAEWLTRQGRVALPYHAGMPSEKRNEHQQRFLREEGVIIVATIAFGMGIDKPDVRFVAHLSLPKSIESYYQETGRAGRDGEPANAWMAYGMQDMVLQQQMVQNSEGSEAYK 399

[Close]

BLAST of atp-dependent dna helicase vs. nr
Match: gi|1181015972|ref|WP_084429017.1| (DNA helicase RecQ [Aliagarivorans marinus])

HSP 1 Score: 298.901 bits (764), Expect = 1.340e-93
Identity = 155/320 (48.44%), Postives = 186/320 (58.13%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIA--------------------------------------------------LMED-----QQCPIGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENT------------------------------------------------QDAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQESNGNEVYK 217
            L LMPTGGGKS+CYQIP+++R G G+V+SPLIA                                                  +ME       QC I LFAIDEAHCVSQWGHDFRPEYQ LS+L + FPN PRIALTATAD+ T                                                +DAG++YCLSRKKV+D  E+L  QGR AL YHAGM + +R ++QQRFL+EE +IIVATIAFGMGIDKPDVRFVAHL+LPK+IESYYQETGRAGRDG P+NAW+ Y + D++  +QM+Q S G+E YK
Sbjct:   80 LTLMPTGGGKSLCYQIPAMVRPGVGIVVSPLIALMKDQVDALHQVGVSAAYLNSTLSSMEQREVEDWLLQGQLQLLYVAPERLMMESTLQLLSQCQISLFAIDEAHCVSQWGHDFRPEYQQLSVLHQRFPNVPRIALTATADQRTKQEIITQLGLGEAQVFVHSFDRSNIRYHVSEPSNAKNGLWNFLSEHHPEDAGVIYCLSRKKVEDTAEWLTRQGRVALPYHAGMPSEKRNEHQQRFLREEGVIIVATIAFGMGIDKPDVRFVAHLSLPKSIESYYQETGRAGRDGEPANAWMAYGMQDMVLQQQMVQNSEGSEAYK 399

[Close]

BLAST of atp-dependent dna helicase vs. nr
Match: gi|516561192|ref|WP_017937689.1| (DNA helicase RecQ [Pseudomonas thermotolerans])

HSP 1 Score: 296.204 bits (757), Expect = 5.623e-93
Identity = 160/319 (50.16%), Postives = 186/319 (58.31%), Query Frame = 0

Query:    1 LVLMPTGGGKSMCYQIPSLLREGTGVVISPLIALMEDQ-----------------QCP--------------------------------------IGLFAIDEAHCVSQWGHDFRPEYQALSILAKEFPNTPRIALTATADENTQ-----------------------------------------------DAGIVYCLSRKKVDDVTEFLRDQGRNALAYHAGMSNAQRKKNQQRFLQEEAIIIVATIAFGMGIDKPDVRFVAHLNLPKNIESYYQETGRAGRDGLPSNAWLNYNLNDVITLRQMLQESNGNEVYK 217
            LVLMPTGGGKS+CYQ+P+LLREG  VV+SPLIALMEDQ                 Q P                                      IGLFAIDEAHCVSQWGHDFRPEY  L  LA+ FP  PRIALTATAD+ T+                                               DAGIVYCLSRKKV++V  FL +QG  AL YHAG+SN  R  +Q+RFL EE +I+VATIAFGMGIDKP+VRFVAHL+LPK++ESYYQETGRAGRDGLP++AW+ Y L DV+ L+QML  S G+E +K
Sbjct:   36 LVLMPTGGGKSLCYQVPALLREGLAVVVSPLIALMEDQVATLNELGVPAVALNSMQTPDEQREIAARLRSGEIKLLYLAPERLVQPRMLAFLQRLRIGLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPEVPRIALTATADKRTREEIVQRLHLENAERFLSSFDRPNIFYRIVPKDNPRKQLLGFLAERKGDAGIVYCLSRKKVEEVAAFLSEQGYPALPYHAGLSNELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKSLESYYQETGRAGRDGLPADAWMTYGLQDVVFLKQMLANSEGDERHK 354

The following BLAST results are available for this feature:

BLAST of atp-dependent dna helicase vs. L. salmonis genes
BLAST of atp-dependent dna helicase vs. SwissProt
BLAST of atp-dependent dna helicase vs. nr

BLAST of atp-dependent dna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 14


Match Name	E-value	Identity	Description
EMLSAG00000001573	4.021e-52	42.15	supercontig:LSalAtl2s:LSalAtl2s1271:90201:96916:-1...	[more]
EMLSAG00000003002	1.451e-49	33.75	supercontig:LSalAtl2s:LSalAtl2s170:674355:677674:-...	[more]
EMLSAG00000001248	1.390e-27	32.68	supercontig:LSalAtl2s:LSalAtl2s1202:153682:156705:...	[more]
EMLSAG00000001574	1.404e-24	46.88	supercontig:LSalAtl2s:LSalAtl2s1271:98605:106214:1...	[more]
EMLSAG00000005110	6.297e-12	30.00	supercontig:LSalAtl2s:LSalAtl2s26:913218:916036:-1...	[more]
EMLSAG00000007141	9.710e-11	26.36	supercontig:LSalAtl2s:LSalAtl2s402:374905:376772:1...	[more]
EMLSAG00000010426	2.375e-10	42.42	supercontig:LSalAtl2s:LSalAtl2s690:265412:268192:-...	[more]
EMLSAG00000011189	1.182e-8	27.55	supercontig:LSalAtl2s:LSalAtl2s760:470421:474651:1...	[more]
EMLSAG00000012740	1.875e-8	26.81	supercontig:LSalAtl2s:LSalAtl2s967:89676:95604:1 g...	[more]
EMLSAG00000004918	1.942e-8	24.02	supercontig:LSalAtl2s:LSalAtl2s259:1039310:1040989...	[more]

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BLAST of atp-dependent dna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|19859341\|sp\|P40724.3\|RECQ_SALTY	2.687e-68	40.38	RecName: Full=ATP-dependent DNA helicase RecQ	[more]
gi\|54041622\|sp\|P15043.5\|RECQ_ECOLI	1.052e-67	40.71	RecName: Full=ATP-dependent DNA helicase RecQ	[more]
gi\|18202817\|sp\|Q9CL21.1\|RECQ_PASMU	8.307e-63	39.23	RecName: Full=ATP-dependent DNA helicase RecQ	[more]
gi\|2500112\|sp\|P71359.1\|RECQ_HAEIN	1.231e-53	45.58	RecName: Full=ATP-dependent DNA helicase RecQ	[more]
gi\|17366056\|sp\|Q9DEY9.1\|BLM_XENLA	2.388e-51	40.25	RecName: Full=Bloom syndrome protein homolog; Shor...	[more]
gi\|1705486\|sp\|P54132.1\|BLM_HUMAN	5.557e-51	40.51	RecName: Full=Bloom syndrome protein; AltName: Ful...	[more]
gi\|5921178\|sp\|O88700.1\|BLM_MOUSE	2.458e-50	40.51	RecName: Full=Bloom syndrome protein homolog; Shor...	[more]
gi\|1248281079\|sp\|Q9I920.2\|BLM_CHICK	4.943e-50	42.41	RecName: Full=Bloom syndrome protein homolog; AltN...	[more]
gi\|17366114\|sp\|Q9VGI8.1\|BLM_DROME	1.504e-49	42.59	RecName: Full=Bloom syndrome protein homolog; Shor...	[more]
gi\|28201770\|sp\|O18017.2\|BLM_CAEEL	5.699e-49	43.44	RecName: Full=Bloom syndrome protein homolog; AltN...	[more]

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BLAST of atp-dependent dna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|749463481\|dbj\|GAM68439.1\|	2.822e-97	50.00	ATP-dependent DNA helicase recQ [Vibrio sp. JCM 19...	[more]
gi\|749449760\|dbj\|GAM75532.1\|	1.496e-96	50.00	ATP-dependent DNA helicase recQ [Vibrio ishigakens...	[more]
gi\|749454070\|dbj\|GAM64738.1\|	1.615e-96	49.69	ATP-dependent DNA helicase recQ [Vibrio ishigakens...	[more]
gi\|495392600\|ref\|WP_008117301.1\|	2.098e-96	49.69	DNA helicase RecQ [Herbaspirillum sp. YR522] >gi\|3...	[more]
gi\|749466011\|dbj\|GAM59545.1\|	1.011e-95	49.69	ATP-dependent DNA helicase recQ [Vibrio ishigakens...	[more]
gi\|494243694\|ref\|WP_007144459.1\|	1.924e-95	51.56	DNA helicase RecQ [Methylophaga aminisulfidivorans...	[more]
gi\|1270439235\|gb\|PHS31805.1\|	5.493e-94	49.69	DNA helicase RecQ [Methylophaga sp.]	[more]
gi\|1180991087\|ref\|WP_084405061.1\|	1.182e-93	48.44	DNA helicase RecQ [Aliagarivorans taiwanensis]	[more]
gi\|1181015972\|ref\|WP_084429017.1\|	1.340e-93	48.44	DNA helicase RecQ [Aliagarivorans marinus]	[more]
gi\|516561192\|ref\|WP_017937689.1\|	5.623e-93	50.16	DNA helicase RecQ [Pseudomonas thermotolerans]	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold31_size578364	supercontig	scaffold31_size578364:510744..511757 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	P:nucleobase-containing compound metabolic process

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold31_size578364-snap-gene-4.0-mRNA-1	maker-scaffold31_size578364-snap-gene-4.0-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold31_size578364:510744..511757+

gene from alignment at scaffold31_size578364:510744..511757+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold31_size578364-snap-gene-4.0 ID=maker-scaffold31_size578364-snap-gene-4.0|Name=atp-dependent dna helicase|organism=Tigriopus kingsejongensis|type=gene|length=1014bp|location=Sequence derived from alignment at scaffold31_size578364:510744..511757+ (Tigriopus kingsejongensis)
TTTCGTCACCAACAAGAAACTATTATCCAAACCCTTCTCGATGGCAAAAA
TGCATTGGTGCTAATGCCAACCGGTGGTGGTAAGTCTATGTGCTACCAGA
TTCCTTCGTTACTTCGTGAGGGCACTGGCGTGGTTATTTCTCCATTAATT
GCGCTGATGGAAGATCAAGTGCAGGCAATGAAGCAGCTTAATATTAATGC
CGCTTATATAAACTCTAGCCTAAGTTTAGAAGAAAAGAAAAAAGTGGAAG
CGGATTTACGCAGTGGCGCGCTAGACTTACTTTACCTTGCGCCAGAGCGA
TTATCTAATGAATACACCTTGCGCTTATTAAAGCAGTGCCCTATTGGTTT
ATTTGCTATTGATGAAGCGCATTGCGTATCGCAATGGGGACACGATTTTC
GTCCAGAGTATCAAGCTTTATCTATCTTAGCCAAAGAGTTTCCTAACACA
CCACGAATTGCACTAACCGCAACCGCCGATGAAAATACCCGTGATGAAAT
TATTGAAAATTTATCACTGCAAGATGCCACCAAATTTATTAGCAGTTTTG
ACAGACCCAATATCCATTACACCATTTCACAAAACCCGAATGCGAAACAA
CGGCTATGGGATTTTATTAGCAATTATCATGCAGAAGATGCGGGTATTGT
GTATTGCTTGTCAAGAAAAAAAGTAGATGACGTGACCGAATTCTTGCGTG
ATCAAGGCCGCAATGCGCTTGCTTACCATGCCGGCATGAGCAATGCGCAA
CGCAAGAAAAACCAGCAACGGTTCTTGCAAGAAGAAGCGATTATTATTGT
GGCGACCATTGCCTTTGGTATGGGCATAGACAAACCCGATGTGCGTTTTG
TGGCGCATTTGAACTTACCCAAGAACATTGAATCGTATTATCAAGAAACC
GGTCGTGCTGGGCGCGATGGCCTGCCTTCAAATGCGTGGCTAAACTACAA
TTTGAACGATGTAATAACCTTGCGACAAATGCTACAAGAAAGCAACGGCA
ACGAGGTTTACAAA

Synonyms

The feature 'atp-dependent dna helicase' has the following synonyms


Synonym
Tk06252

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