reverse transcriptase-like protein, maker-scaffold325_size206031-snap-gene-0.17 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of reverse transcriptase-like protein vs. L. salmonis genes
Match: EMLSAG00000002262 (supercontig:LSalAtl2s:LSalAtl2s142:1422944:1424702:-1 gene:EMLSAG00000002262 transcript:EMLSAT00000002262 description:"maker-LSalAtl2s142-snap-gene-13.28") HSP 1 Score: 61.6178 bits (148), Expect = 3.482e-10 Identity = 37/111 (33.33%), Postives = 56/111 (50.45%), Query Frame = 0 Query: 426 SYAAEIFEKV----EAELDCPICRCLLIKPMILPCQHVFCQYCVFVWYVESSFLGTLNCPSCREITSPAELTELPFVKKLCTALVNMQGDEKQQNRQEDLRKRKIEDTTDD 532 S+A + E V E E C IC + IKP+ C HVFC+YC+ W + L CP+CR S ++ +++ L +LV GD+ Q+ R E L K ++ D+ Sbjct: 340 SHAQQRLEDVMGTCEEEFKCTICEEIFIKPVTTNCGHVFCEYCITKWKHKCK-ENQLTCPNCR--LSVTSYSKNHYIENLIESLVRKFGDDIQKER-EKLSKNRVNGQVDE 446 HSP 2 Score: 57.3806 bits (137), Expect = 7.381e-9 Identity = 37/96 (38.54%), Postives = 49/96 (51.04%), Query Frame = 0 Query: 314 PWKQVQFEPGPAEKDKAHVESFTIGRGIGSEWTILSVKISRHHAKVQVWNGKDWFLCDIKSKNGVFINGLRVRGGNYQPIRHGDILRLGRTSAFVW 409 P K +FE KDKA FT+GR G+ IL +K+SR A + +G W L D S NGVF+NG + HGDI++LG + W Sbjct: 10 PLKSAKFERLVLSKDKA----FTMGRFQGASLPILDIKVSRKPAIFEFVHG-SWTLVDKASMNGVFVNGSPXPSQEPXILCHGDIIKLGPIQDYRW 100
BLAST of reverse transcriptase-like protein vs. nr
Match: gi|1263136438|gb|PFX32582.1| (putative 115 kDa protein [Stylophora pistillata]) HSP 1 Score: 116.701 bits (291), Expect = 5.259e-23 Identity = 82/264 (31.06%), Postives = 125/264 (47.35%), Query Frame = 0 Query: 59 VLESIVKSDLVQHLLKVNALPNSQFGFRKNRSSTAAIATAQAQWFKGSQGGNVVGVLAFDLSFALDTVDKAQLIPKLAALGIKGTALSWFDSYLSGGWQCVDWSGTLSSFADVKFGVRQGSILGPCLFLVLMADLPDCLRIGEEYNDGYADDVSIWA-----------INQRAESFARFAAGNGLIMNASKTQLMLGGIVRRAD------LEDFHVVVDRVTVFPDKKLELINVKFDSSFSTFPHGALVAASARQRAAMVARLE 305 +LE V S L QHL+ N L QFGFRK S+ +A+ + + + G + G + DL+ A DTVD L+ KL+ +G+ +L WF SY++ Q LS V GV QGSILGP LF++ + DLP L + YADD I+ +NQ + A++ + L +N KT+ ML G ++ + F ++ VT F + + + S FS H +A QR ++ R++ Sbjct: 2042 ILEKAVHSQLYQHLVINNLLTRKQFGFRKGLSTESALTSFADEVLLNMEQGKLCGAVFLDLTKAFDTVDHRILLRKLSKIGLCENSLQWFRSYITDRKQRTCCGNELSDELPVTHGVPQGSILGPLLFVIYINDLPSVLDACQA--SLYADDTVIYCYGSSSQELTEKLNQDLLAVAKWLNEHKLTLNLDKTKCMLIGSNKKLQRKIALTVSIFDHCINNVTCF-----KYLGILISSDFSWTNHVEYMAGKVNQRLGLLRRIK 2298
BLAST of reverse transcriptase-like protein vs. nr
Match: gi|1274993192|gb|PIK40493.1| (putative RNA-directed DNA polymerase from mobile element jockey-like [Apostichopus japonicus]) HSP 1 Score: 111.309 bits (277), Expect = 7.484e-23 Identity = 66/202 (32.67%), Postives = 101/202 (50.00%), Query Frame = 0 Query: 55 ITRAVLESIVKSDLVQHLLKVNALPNSQFGFRKNRSSTAAIATAQAQWFKGSQGGNVVGVLAFDLSFALDTVDKAQLIPKLAALGIKGTALSWFDSYLSGGWQCVDWSGTLSSFADVKFGVRQGSILGPCLFLVLMADLPDCLRIGEEYNDGYADDVSIWA-----------INQRAESFARFAAGNGLIMNASKTQLMLGG 245 I ++E V DL +HL K + L N+Q GFR+ S A+ QW + G ++G + DLS A D V+ ++ +L G+ A++WF SYL QC +G LSS + GV Q SILGP LFL+ + D+ L D YADD + +A + + E + + N + +N +KT+++L G Sbjct: 143 ILSKIIEKHVHLDLSKHLNKFDLLRNAQSGFREKHSCETALLKVVDQWMESIDKGYILGTVFLDLSKAFDLVNHEIMVTQLRIYGVSSKAINWFKSYLVNRSQCTYLNGVLSSSRRIACGVPQVSILGPLLFLIYINDMDLTLEYCSA--DMYADDTTFYASDTSTIDLNNKLQRDMEKVSAWCDRNKMAINTTKTKVLLMG 342
BLAST of reverse transcriptase-like protein vs. nr
Match: gi|1005431166|ref|XP_015753290.1| (PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Acropora digitifera]) HSP 1 Score: 114.005 bits (284), Expect = 1.083e-22 Identity = 74/227 (32.60%), Postives = 111/227 (48.90%), Query Frame = 0 Query: 55 ITRAVLESIVKSDLVQHLLKVNALPNSQFGFRKNRSSTAAIATAQAQWFKGSQGGNVVGVLAFDLSFALDTVDKAQLIPKLAALGIKGTALSWFDSYLSGGWQCVDWSGTLSSFADVKFGVRQGSILGPCLFLVLMADLPDCLRIGEEYNDGYADDVSI-----------WAINQRAESFARFAAGNGLIMNASKTQLMLGGIVRRADLEDFHVVVDRVTVFPDKKL 270 + + E IV L Q+L L + Q GFR S+ A+ A W G + GV+ DL A DT+D ++ KL+ G + WF SYLS Q + +G+LS+ ++V GV QGSILGP LFL+ + DLP+CLR + +ADD +I A+ + + N L +N +KT+LM+ G +R H D + + D+K+ Sbjct: 197 VVTKIFEKIVYDQLYQYLNDNKLLSSCQSGFRSLHSTLTALLEATNSWSVNIDNGFLNGVVFIDLKKAFDTIDHEIILRKLSYFGADQATIKWFQSYLSDRTQRCNVNGSLSTTSNVTCGVPQGSILGPLLFLMYINDLPNCLR--DAAPRMFADDTNITLSAKTVADLKLAVTSELNNLTCWLRANRLSLNVAKTELMIIGSRQR-----LHSQCDEIDICIDEKM 416
BLAST of reverse transcriptase-like protein vs. nr
Match: gi|1263115095|gb|PFX12533.1| (RNA-directed DNA polymerase from mobile element jockey [Stylophora pistillata]) HSP 1 Score: 113.62 bits (283), Expect = 1.433e-22 Identity = 77/258 (29.84%), Postives = 124/258 (48.06%), Query Frame = 0 Query: 59 VLESIVKSDLVQHLLKVNALPNSQFGFRKNRSSTAAIATAQAQWFKGSQGGNVVGVLAFDLSFALDTVDKAQLIPKLAALGIKGTALSWFDSYLSGGWQCVDWSGTLSSFADVKFGVRQGSILGPCLFLVLMADLPDCLRIGEEYNDGYADDVSIWAINQRAESFARFAA-----------GNGLIMN--ASKTQLMLGGIVRRADLED--FHVVVDRVTVFPDKKLELINVKFDSSFSTFPHGALVAASARQRAAMV 301 +LE +V L+ H + L + Q+GFR+ RS+ A+ + + GN+ G + DLS A DT+ + L+ KL+ G++GT L+WF YL Q V + G LS + GV QGSILGP LF++ D+ L+ + YADD I+ ++ ++ R + N LI+N KT+ ML G +R +L+D + V+ + + + V DSS + H + A R ++ Sbjct: 211 ILEKVVFKQLMAHFEQNGLLSHFQYGFRRMRSTELAVTHLTDVIRREGENGNLTGCVFIDLSKAFDTISHSGLLSKLSTYGVRGTELAWFTDYLFCRSQVVQYKGVLSEPQPILTGVPQGSILGPILFIIFFNDVHKPLQHSKIIT--YADDSVIYTSSKDIDTIQRSLSEDMNNLCEWFKDNELIINLKKDKTESMLFGTAKRINLQDKELKLSVNGTLINNTSTYKYLGVHLDSSLNLASHFDRIYKKAATRINLL 466
BLAST of reverse transcriptase-like protein vs. nr
Match: gi|1263117044|gb|PFX14019.1| (RNA-directed DNA polymerase from mobile element jockey [Stylophora pistillata]) HSP 1 Score: 114.775 bits (286), Expect = 1.469e-22 Identity = 77/258 (29.84%), Postives = 124/258 (48.06%), Query Frame = 0 Query: 59 VLESIVKSDLVQHLLKVNALPNSQFGFRKNRSSTAAIATAQAQWFKGSQGGNVVGVLAFDLSFALDTVDKAQLIPKLAALGIKGTALSWFDSYLSGGWQCVDWSGTLSSFADVKFGVRQGSILGPCLFLVLMADLPDCLRIGEEYNDGYADDVSIWAINQRAESFARFAA-----------GNGLIMN--ASKTQLMLGGIVRRADLED--FHVVVDRVTVFPDKKLELINVKFDSSFSTFPHGALVAASARQRAAMV 301 +LE +V L+ H + L + Q+GFR+ RS+ A+ + + GN+ G + DLS A DT+ + L+ KL+ G++GT L+WF YL Q V + G LS + GV QGSILGP LF++ D+ L+ + YADD I+ ++ ++ R + N LI+N KT+ ML G +R +L+D + V+ + + + V DSS + H + A R ++ Sbjct: 638 ILEKVVFKQLMAHFEQNGLLSHFQYGFRRMRSTELAVTHLTDVIRREGENGNLTGCVFIDLSKAFDTISHSGLLSKLSTYGVRGTELAWFTDYLFCRSQVVQYKGVLSEPQPILTGVPQGSILGPILFIIFFNDVHKPLQHSKIIT--YADDSVIYTSSKDIDTIQRSLSEDMNNLCEWFKDNELIINLKKDKTESMLFGTAKRINLQDKELKLSVNGTLINNTSTYKYLGVHLDSSLNLASHFDRIYKKAATRINLL 893
BLAST of reverse transcriptase-like protein vs. nr
Match: gi|1263129190|gb|PFX25464.1| (Coiled-coil domain-containing protein lobo-like [Stylophora pistillata]) HSP 1 Score: 115.161 bits (287), Expect = 1.509e-22 Identity = 77/258 (29.84%), Postives = 124/258 (48.06%), Query Frame = 0 Query: 59 VLESIVKSDLVQHLLKVNALPNSQFGFRKNRSSTAAIATAQAQWFKGSQGGNVVGVLAFDLSFALDTVDKAQLIPKLAALGIKGTALSWFDSYLSGGWQCVDWSGTLSSFADVKFGVRQGSILGPCLFLVLMADLPDCLRIGEEYNDGYADDVSIWAINQRAESFARFAA-----------GNGLIMN--ASKTQLMLGGIVRRADLED--FHVVVDRVTVFPDKKLELINVKFDSSFSTFPHGALVAASARQRAAMV 301 +LE +V L+ H + L + Q+GFR+ RS+ A+ + + GN+ G + DLS A DT+ + L+ KL+ G++GT L+WF YL Q V + G LS + GV QGSILGP LF++ D+ L+ + YADD I+ ++ ++ R + N LI+N KT+ ML G +R +L+D + V+ + + + V DSS + H + A R ++ Sbjct: 699 ILEKVVFKQLMAHFEQNGLLSHFQYGFRRMRSTELAVTHLTDVIRREGENGNLTGCVFIDLSKAFDTISHSGLLSKLSTYGVRGTELAWFTDYLFCRSQVVQYKGVLSEPQPILTGVPQGSILGPILFIIFFNDVHKPLQHSKIIT--YADDSVIYTSSKDIDTIQRSLSEDMNNLCEWFKDNELIINLKKDKTESMLFGTAKRINLQDKELKLSVNGTLINNTSTYKYLGVHLDSSLNLASHFDRIYKKAATRINLL 954 HSP 2 Score: 115.161 bits (287), Expect = 1.509e-22 Identity = 77/258 (29.84%), Postives = 124/258 (48.06%), Query Frame = 0 Query: 59 VLESIVKSDLVQHLLKVNALPNSQFGFRKNRSSTAAIATAQAQWFKGSQGGNVVGVLAFDLSFALDTVDKAQLIPKLAALGIKGTALSWFDSYLSGGWQCVDWSGTLSSFADVKFGVRQGSILGPCLFLVLMADLPDCLRIGEEYNDGYADDVSIWAINQRAESFARFAA-----------GNGLIMN--ASKTQLMLGGIVRRADLED--FHVVVDRVTVFPDKKLELINVKFDSSFSTFPHGALVAASARQRAAMV 301 +LE +V L+ H + L + Q+GFR+ RS+ A+ + + GN+ G + DLS A DT+ + L+ KL+ G++GT L+WF YL Q V + G LS + GV QGSILGP LF++ D+ L+ + YADD I+ ++ ++ R + N LI+N KT+ ML G +R +L+D + V+ + + + V DSS + H + A R ++ Sbjct: 1248 ILEKVVFKQLMAHFEQNGLLSHFQYGFRRMRSTELAVTHLTDVIRREGENGNLTGCVFIDLSKAFDTISHSGLLSKLSTYGVRGTELAWFTDYLFCRSQVVQYKGVLSEPQPILTGVPQGSILGPILFIIFFNDVHKPLQHSKIIT--YADDSVIYTSSKDIDTIQRSLSEDMNNLCEWFKDNELIINLKKDKTESMLFGTAKRINLQDKELKLSVNGTLINNTSTYKYLGVHLDSSLNLASHFDRIYKKAATRINLL 1503
BLAST of reverse transcriptase-like protein vs. nr
Match: gi|1263130833|gb|PFX27068.1| (RNA-directed DNA polymerase from mobile element jockey [Stylophora pistillata]) HSP 1 Score: 114.005 bits (284), Expect = 1.686e-22 Identity = 66/164 (40.24%), Postives = 93/164 (56.71%), Query Frame = 0 Query: 59 VLESIVKSDLVQHLLKVNALPNSQFGFRKNRSSTAAIATAQAQWFKGSQGGNVVGVLAFDLSFALDTVDKAQLIPKLAALGIKGTALSWFDSYLSGGWQCVDWSGTLSSFADVKFGVRQGSILGPCLFLVLMADLPDCLRIGEEYNDGYADDVSIWAINQRAES 222 +LE IV + L H+ + L ++Q+GFR+N S+ + W + G VG++ D A D+V+ L KL A+GI G LSWF SYLS Q V SGT S+ +K+GV QGSILGP LF V + D PD + GE + +ADD +I+ I + +S Sbjct: 299 ILEDIVSTSLDLHIKSLGLLSDNQWGFRENYSTEGLLLHLTESWKEALDNGLRVGIVFIDFRKAFDSVNHTILQEKLKAMGIAGNFLSWFCSYLSNRRQFVQLSGTKSNRRFIKYGVPQGSILGPKLFSVYVNDFPDAISDGELF--MFADDTTIFTIGKDVDS 460 HSP 2 Score: 78.1814 bits (191), Expect = 3.467e-11 Identity = 45/117 (38.46%), Postives = 64/117 (54.70%), Query Frame = 0 Query: 59 VLESIVKSDLVQHLLKVNALPNSQFGFRKNRSSTAAIATAQAQWFKGSQGGNVVGVLAFDLSFALDTVDKAQLIPKLAALGIKGTALSWFDSYLSGGWQCVDWSGTLSSFADVKFGV 175 +LE IV + L H+ + L ++Q+GFR+N S+ + W + G VG++ D A D+V+ L KL A+GI G LSWF SYLS Q V SGT S+ +K+GV Sbjct: 145 ILEDIVSTSLDLHIKSLGLLSDNQWGFRENYSTEGLLLHLTETWKEALDNGLRVGIVFIDFRKAFDSVNHTILQEKLKAMGIAGNFLSWFCSYLSNRRQFVQLSGTKSNRRFIKYGV 261
BLAST of reverse transcriptase-like protein vs. nr
Match: gi|1263137673|gb|PFX33804.1| (RNA-directed DNA polymerase from mobile element jockey [Stylophora pistillata]) HSP 1 Score: 114.775 bits (286), Expect = 1.693e-22 Identity = 77/258 (29.84%), Postives = 124/258 (48.06%), Query Frame = 0 Query: 59 VLESIVKSDLVQHLLKVNALPNSQFGFRKNRSSTAAIATAQAQWFKGSQGGNVVGVLAFDLSFALDTVDKAQLIPKLAALGIKGTALSWFDSYLSGGWQCVDWSGTLSSFADVKFGVRQGSILGPCLFLVLMADLPDCLRIGEEYNDGYADDVSIWAINQRAESFARFAA-----------GNGLIMN--ASKTQLMLGGIVRRADLED--FHVVVDRVTVFPDKKLELINVKFDSSFSTFPHGALVAASARQRAAMV 301 +LE +V L+ H + L + Q+GFR+ RS+ A+ + + GN+ G + DLS A DT+ + L+ KL+ G++GT L+WF YL Q V + G LS + GV QGSILGP LF++ D+ L+ + YADD I+ ++ ++ R + N LI+N KT+ ML G +R +L+D + V+ + + + V DSS + H + A R ++ Sbjct: 780 ILEKVVFKQLMAHFEQNGLLSHFQYGFRRMRSTELAVTHLTDVIRREGENGNLTGCVFIDLSKAFDTISHSGLLSKLSTYGVRGTELAWFTDYLFCRSQVVQYKGVLSEPQPILTGVPQGSILGPILFIIFFNDVHKPLQHSKIIT--YADDSVIYTSSKDIDTIQRSLSEDMNNLCEWFKDNELIINLKKDKTESMLFGTAKRINLQDKELKLSVNGTLINNTSTYKYLGVHLDSSLNLASHFDRIYKKAATRINLL 1035
BLAST of reverse transcriptase-like protein vs. nr
Match: gi|1263133167|gb|PFX29357.1| (RNA-directed DNA polymerase from mobile element jockey [Stylophora pistillata]) HSP 1 Score: 114.775 bits (286), Expect = 1.694e-22 Identity = 77/258 (29.84%), Postives = 124/258 (48.06%), Query Frame = 0 Query: 59 VLESIVKSDLVQHLLKVNALPNSQFGFRKNRSSTAAIATAQAQWFKGSQGGNVVGVLAFDLSFALDTVDKAQLIPKLAALGIKGTALSWFDSYLSGGWQCVDWSGTLSSFADVKFGVRQGSILGPCLFLVLMADLPDCLRIGEEYNDGYADDVSIWAINQRAESFARFAA-----------GNGLIMN--ASKTQLMLGGIVRRADLED--FHVVVDRVTVFPDKKLELINVKFDSSFSTFPHGALVAASARQRAAMV 301 +LE +V L+ H + L + Q+GFR+ RS+ A+ + + GN+ G + DLS A DT+ + L+ KL+ G++GT L+WF YL Q V + G LS + GV QGSILGP LF++ D+ L+ + YADD I+ ++ ++ R + N LI+N KT+ ML G +R +L+D + V+ + + + V DSS + H + A R ++ Sbjct: 605 ILEKVVFKQLMAHFEQNGLLSHFQYGFRRMRSTELAVTHLTDVIRREGENGNLTGCVFIDLSKAFDTISHSGLLSKLSTYGVRGTELAWFTDYLFCRSQVVQYKGVLSEPQPILTGVPQGSILGPILFIIFFNDVHKPLQHSKIIT--YADDSVIYTSSKDIDTIQRSLSEDMNNLCEWFKDNELIINLKKDKTESMLFGTAKRINLQDKELKLSVNGTLINNTSTYKYLGVHLDSSLNLASHFDRIYKKAATRINLL 860
BLAST of reverse transcriptase-like protein vs. nr
Match: gi|1263117364|gb|PFX14292.1| (RNA-directed DNA polymerase from mobile element jockey [Stylophora pistillata]) HSP 1 Score: 113.62 bits (283), Expect = 1.766e-22 Identity = 77/258 (29.84%), Postives = 124/258 (48.06%), Query Frame = 0 Query: 59 VLESIVKSDLVQHLLKVNALPNSQFGFRKNRSSTAAIATAQAQWFKGSQGGNVVGVLAFDLSFALDTVDKAQLIPKLAALGIKGTALSWFDSYLSGGWQCVDWSGTLSSFADVKFGVRQGSILGPCLFLVLMADLPDCLRIGEEYNDGYADDVSIWAINQRAESFARFAA-----------GNGLIMN--ASKTQLMLGGIVRRADLED--FHVVVDRVTVFPDKKLELINVKFDSSFSTFPHGALVAASARQRAAMV 301 +LE +V L+ H + L + Q+GFR+ RS+ A+ + + GN+ G + DLS A DT+ + L+ KL+ G++GT L+WF YL Q V + G LS + GV QGSILGP LF++ D+ L+ + YADD I+ ++ ++ R + N LI+N KT+ ML G +R +L+D + V+ + + + V DSS + H + A R ++ Sbjct: 198 ILEKVVFKQLMAHFEQNGLLSHFQYGFRRMRSTELAVTHLTDVIRREGENGNLTGCVFIDLSKAFDTISHSGLLSKLSTYGVRGTELAWFTDYLFCRSQVVQYKGVLSEPQPILTGVPQGSILGPILFIIFFNDVHKPLQHSKIIT--YADDSVIYTSSKDIDTIQRSLSEDMNNLCEWFKDNELIINLKKDKTESMLFGTAKRINLQDKELKLSVNGTLINNTSTYKYLGVHLDSSLNLASHFDRIYKKAATRINLL 453 The following BLAST results are available for this feature:
BLAST of reverse transcriptase-like protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of reverse transcriptase-like protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of reverse transcriptase-like protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold325_size206031:38201..49702- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold325_size206031-snap-gene-0.17 ID=maker-scaffold325_size206031-snap-gene-0.17|Name=reverse transcriptase-like protein|organism=Tigriopus kingsejongensis|type=gene|length=11502bp|location=Sequence derived from alignment at scaffold325_size206031:38201..49702- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'reverse transcriptase-like protein' has the following synonyms
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