chitinase isoform x1, maker-scaffold328_size205007-snap-gene-0.19 (gene) Tigriopus kingsejongensis

Overview
Namechitinase isoform x1
Unique Namemaker-scaffold328_size205007-snap-gene-0.19
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of chitinase isoform x1 vs. L. salmonis genes
Match: EMLSAG00000008235 (supercontig:LSalAtl2s:LSalAtl2s497:5379:7138:-1 gene:EMLSAG00000008235 transcript:EMLSAT00000008235 description:"maker-LSalAtl2s497-augustus-gene-0.18")

HSP 1 Score: 65.4698 bits (158), Expect = 4.749e-14
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 0
Query:   27 DKKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDLGPSDCGPGECNFDSYRRFTALASE--TFVPMLSV 115
            DK V+CY+ SWA Y+   G+FDV  +D  +CTH  Y +A ID N++ +   DP+ DL   + G G      Y+RFT +  +    + +LSV
Sbjct:   25 DKAVLCYFSSWATYRRGKGKFDVENIDPSMCTHVAYGFAGIDENTYKIKVLDPYNDL-TENWGKG-----GYKRFTDMKKKNSNLITLLSV 109          
BLAST of chitinase isoform x1 vs. L. salmonis genes
Match: EMLSAG00000005289 (supercontig:LSalAtl2s:LSalAtl2s282:351594:354484:1 gene:EMLSAG00000005289 transcript:EMLSAT00000005289 description:"maker-LSalAtl2s282-augustus-gene-3.25")

HSP 1 Score: 60.4622 bits (145), Expect = 2.637e-12
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 0
Query:   26 HDKKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDL 83
            H+K VVCY+G+W++Y+ + G F    +D  LCTH +Y++A +D     +   DPW DL
Sbjct:   36 HNKVVVCYWGTWSNYRPKDGAFKPEDIDASLCTHLIYSFAGLDETEXKIKSLDPWMDL 93          
BLAST of chitinase isoform x1 vs. L. salmonis genes
Match: EMLSAG00000008812 (supercontig:LSalAtl2s:LSalAtl2s549:413892:415521:-1 gene:EMLSAG00000008812 transcript:EMLSAT00000008812 description:"maker-LSalAtl2s549-augustus-gene-4.7")

HSP 1 Score: 57.3806 bits (137), Expect = 3.055e-11
Identity = 33/93 (35.48%), Postives = 52/93 (55.91%), Query Frame = 0
Query:   25 QHDKKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDLGPSDCGPGECNFDSYRRFTALASET--FVPMLSV 115
            + +K ++CY+ SWA Y+   G+FDV  +D  +CTH  Y +A +D NS+ +   DP+ DL   + G G     + +RF  L  +    V +LSV
Sbjct:   23 KENKVILCYFSSWATYRWSNGKFDVENIDPFICTHVAYGFAGLDPNSYKIRLLDPYNDL-EENWGKG-----AMKRFNDLKKKNPKLVTLLSV 109          
BLAST of chitinase isoform x1 vs. L. salmonis genes
Match: EMLSAG00000002698 (supercontig:LSalAtl2s:LSalAtl2s155:17602:57717:1 gene:EMLSAG00000002698 transcript:EMLSAT00000002698 description:"maker-LSalAtl2s155-augustus-gene-0.9")

HSP 1 Score: 53.1434 bits (126), Expect = 1.115e-9
Identity = 27/80 (33.75%), Postives = 45/80 (56.25%), Query Frame = 0
Query:    6 LSAIFWSIAIQAGSSVSTRQHD--KKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDL 83
            L  +   ++I +G+ +  RQ D  KKVVCYY +WA Y++   +F    ++  LCTH +YA+  +  +   + P D + DL
Sbjct:   34 LIVVLVCLSISSGTKLVKRQVDNQKKVVCYYANWAVYRQGQAKFSPQNINPYLCTHLIYAFGGLKKDD-TIAPFDKYQDL 112          
BLAST of chitinase isoform x1 vs. SwissProt
Match: gi|59797979|sp|Q9W092.1|CHIT2_DROME (RecName: Full=Probable chitinase 2; Flags: Precursor)

HSP 1 Score: 59.6918 bits (143), Expect = 1.640e-10
Identity = 34/89 (38.20%), Postives = 47/89 (52.81%), Query Frame = 0
Query:   19 SSVSTRQ---HDKKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDLGPSDCGPGECNFDSYRRFTAL 104
            +SV+ R    HDK VVCY  +WA Y+ E G + +   D +LCTH +YA+A +D     +   DPW DL   + G G      Y + T L
Sbjct:   29 ASVAARTGPLHDKVVVCYVSTWAVYRPEQGAYAIENFDPNLCTHVVYAFAGLDITQAAIKSLDPWQDL-KEEYGKG-----GYEKMTGL 111          
BLAST of chitinase isoform x1 vs. SwissProt
Match: gi|215273952|sp|Q9W5U2.2|CHI10_DROME (RecName: Full=Probable chitinase 10; AltName: Full=Probable chitinase 1; AltName: Full=Probable chitinase 3; Flags: Precursor)

HSP 1 Score: 53.1434 bits (126), Expect = 3.215e-8
Identity = 32/92 (34.78%), Postives = 49/92 (53.26%), Query Frame = 0
Query:   24 RQHDKKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDLGPSDCGPGECNFDSYRRFTALASETFVPMLSV 115
            R    KV+CY+ +WA Y++  GRF    ++T+LCTH +Y +A +D +   L   D W D+        E NF  Y R T+L S+     L++
Sbjct:  961 RDSHYKVICYFTNWAWYRKGIGRFTPDDINTELCTHVIYGFAVLDYSELVLRTHDSWADV--------ENNF--YTRVTSLKSKGIKVSLAL 1042          

HSP 2 Score: 51.9878 bits (123), Expect = 8.321e-8
Identity = 21/55 (38.18%), Postives = 36/55 (65.45%), Query Frame = 0
Query:   29 KVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDL 83
            K++CY+ +WA Y++  G+F    +D+DLCTH +Y +A +  ++  + P D W DL
Sbjct: 1410 KIICYFTNWAWYRQGGGKFLPEDIDSDLCTHIIYGFAVLSRDNLTIQPHDSWADL 1464          

HSP 3 Score: 51.2174 bits (121), Expect = 1.594e-7
Identity = 23/55 (41.82%), Postives = 34/55 (61.82%), Query Frame = 0
Query:   29 KVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDL 83
            KVVCY+ SWA Y+   G+F    +D +LCTH +Y +A +D+ S  +   D W D+
Sbjct: 1909 KVVCYFTSWAWYRSSQGKFVPEDIDANLCTHLIYGFAVLDSKSLTIKTHDSWTDI 1963          
BLAST of chitinase isoform x1 vs. nr
Match: gi|1160524505|gb|AQZ26773.1| (chitinase 8 [Tigriopus japonicus])

HSP 1 Score: 167.162 bits (422), Expect = 1.590e-47
Identity = 80/116 (68.97%), Postives = 91/116 (78.45%), Query Frame = 0
Query:    1 MKVL-ILSAIFWSIAIQAGSSVSTRQHDKKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDLGPSDCGPGECNFDSYRRFTALASETFVPMLSV 115
            MKV  ++ AI     IQ    V  +Q DK +VCY+ SWAHY+E+PG FDVTW+D  LCTHG+YAYADIDT +W LMP DPWYDLGPSDCG GECNFDSYRRFT+LASETF PMLSV
Sbjct:   24 MKVFGLVLAILAISTIQEAQGV--QQSDKLLVCYFSSWAHYREDPGHFDVTWIDPTLCTHGIYAYADIDTVTWSLMPVDPWYDLGPSDCGIGECNFDSYRRFTSLASETFTPMLSV 137          
BLAST of chitinase isoform x1 vs. nr
Match: gi|1160524507|gb|AQZ26774.1| (chitinase 9 [Tigriopus japonicus])

HSP 1 Score: 117.857 bits (294), Expect = 5.185e-29
Identity = 49/99 (49.49%), Postives = 69/99 (69.70%), Query Frame = 0
Query:   17 AGSSVSTRQHDKKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDLGPSDCGPGECNFDSYRRFTALASETFVPMLSV 115
            A ++     H+K V CY+ +W+ Y+  P +FD++ +DTDLCTHG+Y  ADID  SW +   DPW+DL  SDC PG CN++ YRRFT LA E F+P+L++
Sbjct:   17 ASAACGQMNHNKTVACYFENWSFYRPPPVKFDISSIDTDLCTHGIYIAADIDNVSWTIFAADPWFDLDSSDCEPGYCNYNGYRRFTDLADEDFIPILAL 115          
BLAST of chitinase isoform x1 vs. nr
Match: gi|1160524503|gb|AQZ26772.1| (chitinase 4 [Tigriopus japonicus])

HSP 1 Score: 117.472 bits (293), Expect = 1.948e-28
Identity = 53/113 (46.90%), Postives = 74/113 (65.49%), Query Frame = 0
Query:    3 VLILSAIFWSIAIQAGSSVSTRQHDKKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDLGPSDCGPGECNFDSYRRFTALASETFVPMLSV 115
             L ++ +   +A+ A  S +   HDK V CY G+W  Y++  G+FD+  +DT  CTHG Y +AD+D  +W +   DPWYDL P DC P  CN+DSYRRFTAL S+ F+P+LS+
Sbjct:    8 ALGVATVIALLAVGA-HSQNVDDHDKIVSCYIGTWGFYRQGLGKFDIDDIDTQYCTHGFYGFADLDNITWTIYAYDPWYDLAPEDCEPFYCNYDSYRRFTALGSDKFMPLLSI 119          
BLAST of chitinase isoform x1 vs. nr
Match: gi|1325321108|ref|XP_023342357.1| (acidic mammalian chitinase-like [Eurytemora affinis])

HSP 1 Score: 85.1149 bits (209), Expect = 5.771e-17
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = 0
Query:   20 SVSTRQHDKKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDLGPSD--CGPGECNFDSYRRFTALASET 108
            S S   + K++VCY+G+WA Y+   G+FD+  +D +LCTH  Y +A+++  +W  +  DPWYDL P D  C    C++DSYRRF AL  + 
Sbjct:  121 SSSNPGNKKRLVCYFGAWAFYRIGFGQFDIDNIDPNLCTHLCYGFANMNNQTWEAVAYDPWYDLAPWDEGCDGDHCHYDSYRRFNALKQQN 211          
BLAST of chitinase isoform x1 vs. nr
Match: gi|1061476746|gb|ODM94560.1| (putative chitinase 2 [Orchesella cincta])

HSP 1 Score: 78.5666 bits (192), Expect = 1.198e-14
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 0
Query:   22 STRQHDKKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDLGPSDCGPGECNFDSYRRFTALASET 108
            S   H+K VVCY G+WA Y++  G++D+T +D  LCTH +Y++A +D  ++ + P DPW DL     G G   FD Y +FT L  + 
Sbjct:   49 SVLAHEKVVVCYVGTWAAYRKLDGKYDITNIDPKLCTHIIYSFAGLDNQTYEMKPLDPWLDLFVEKNGGG---FDWYNKFTQLKQKN 132          
BLAST of chitinase isoform x1 vs. nr
Match: gi|1325328590|ref|XP_023346146.1| (LOW QUALITY PROTEIN: acidic mammalian chitinase-like [Eurytemora affinis])

HSP 1 Score: 77.411 bits (189), Expect = 3.022e-14
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 0
Query:   27 DKKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDLGPSD--CGPGECNFDSYRRFTAL 104
            +KKVVCY+  +  Y+   GRFD+  +D  LCTH  YA+A++D ++W L+  DPWYDL P D  C    C++DSYRRF  L
Sbjct:   24 EKKVVCYFSGFX-YRPGSGRFDIDNIDPFLCTHINYAFANMDNSTWELVSYDPWYDLAPWDQGCDGDHCHWDSYRRFNKL 102          
BLAST of chitinase isoform x1 vs. nr
Match: gi|1022733513|gb|KZR98795.1| (Chitotriosidase-1 [Daphnia magna])

HSP 1 Score: 68.5514 bits (166), Expect = 1.213e-12
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 0
Query:    1 MKVLILSAIFWSIA-IQAGSSVSTRQHDKKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDLGPSDCGPGECNFDSYRRFTALASET 108
            MK+L+   I  ++     G++V  +   KK+VCYYGSWA Y+   G+FDV  +D  LCTH +Y +  + T++  ++P DPW DL   + G G     ++ RFT L  + 
Sbjct:    1 MKLLLSCWILATVVHFSYGAAVEPKAGGKKMVCYYGSWAVYRPGNGKFDVEHIDPFLCTHIIYGFTGLGTDN-TMIPLDPWNDL-YDNWGKG-----AFLRFTGLKRQN 102          
BLAST of chitinase isoform x1 vs. nr
Match: gi|644991431|ref|XP_008202532.1| (PREDICTED: chitinase isoform X1 [Nasonia vitripennis])

HSP 1 Score: 70.0922 bits (170), Expect = 1.100e-11
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 0
Query:   24 RQHDKKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDLGPSDCGPGECNFDSYRRFTALASET 108
            R +D+KV+CYYGSW+ Y+   G+FD++ +D  LCTH +YA+A +   S  +   DPW DL      P     D YR+F AL  + 
Sbjct:    8 RSNDRKVICYYGSWSVYRPGLGKFDISHIDASLCTHLIYAFAGL-GESGEVKILDPWNDL------PDGGGKDGYRKFNALRKDN 85          
BLAST of chitinase isoform x1 vs. nr
Match: gi|1229711565|ref|XP_022117797.1| (probable chitinase 2 [Pieris rapae])

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 0
Query:   27 DKKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDLGPSDCGPGECNFDSYRRFTALASET 108
            +K V+CYYG+WA Y+   G+FDVT ++T+LCTH +YA+A I++    ++  DP+ DL      P     D++R+F AL  + 
Sbjct:   17 EKNVICYYGTWATYRNGLGKFDVTNINTNLCTHLVYAFAGINSQG-SVISLDPYLDL------PDNWGRDNFRKFNALKQKN 91          
BLAST of chitinase isoform x1 vs. nr
Match: gi|1227102967|gb|OXU26105.1| (hypothetical protein TSAR_016779 [Trichomalopsis sarcophagae])

HSP 1 Score: 69.707 bits (169), Expect = 1.369e-11
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 0
Query:   23 TRQHDKKVVCYYGSWAHYQEEPGRFDVTWVDTDLCTHGLYAYADIDTNSWFLMPTDPWYDLGPSDCGPGECNFDSYRRFTALASET 108
            T  +D+KV+CYYGSW+ Y+   G+FD++ +D+ LCTH +YA+A +   S  +   DPW DL      P     D YR+F AL  + 
Sbjct:   26 TTSNDRKVICYYGSWSVYRPGLGKFDISHIDSSLCTHLIYAFAGL-GESGQVKVLDPWNDL------PDGGGKDGYRKFNALRKDN 104          
The following BLAST results are available for this feature:
BLAST of chitinase isoform x1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAG000000082354.749e-1438.46supercontig:LSalAtl2s:LSalAtl2s497:5379:7138:-1 ge... [more]
EMLSAG000000052892.637e-1241.38supercontig:LSalAtl2s:LSalAtl2s282:351594:354484:1... [more]
EMLSAG000000088123.055e-1135.48supercontig:LSalAtl2s:LSalAtl2s549:413892:415521:-... [more]
EMLSAG000000026981.115e-933.75supercontig:LSalAtl2s:LSalAtl2s155:17602:57717:1 g... [more]
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BLAST of chitinase isoform x1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
gi|59797979|sp|Q9W092.1|CHIT2_DROME1.640e-1038.20RecName: Full=Probable chitinase 2; Flags: Precurs... [more]
gi|215273952|sp|Q9W5U2.2|CHI10_DROME3.215e-834.78RecName: Full=Probable chitinase 10; AltName: Full... [more]
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BLAST of chitinase isoform x1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1160524505|gb|AQZ26773.1|1.590e-4768.97chitinase 8 [Tigriopus japonicus][more]
gi|1160524507|gb|AQZ26774.1|5.185e-2949.49chitinase 9 [Tigriopus japonicus][more]
gi|1160524503|gb|AQZ26772.1|1.948e-2846.90chitinase 4 [Tigriopus japonicus][more]
gi|1325321108|ref|XP_023342357.1|5.771e-1742.86acidic mammalian chitinase-like [Eurytemora affini... [more]
gi|1061476746|gb|ODM94560.1|1.198e-1441.38putative chitinase 2 [Orchesella cincta][more]
gi|1325328590|ref|XP_023346146.1|3.022e-1448.75LOW QUALITY PROTEIN: acidic mammalian chitinase-li... [more]
gi|1022733513|gb|KZR98795.1|1.213e-1236.70Chitotriosidase-1 [Daphnia magna][more]
gi|644991431|ref|XP_008202532.1|1.100e-1141.18PREDICTED: chitinase isoform X1 [Nasonia vitripenn... [more]
gi|1229711565|ref|XP_022117797.1|1.158e-1140.24probable chitinase 2 [Pieris rapae][more]
gi|1227102967|gb|OXU26105.1|1.369e-1140.70hypothetical protein TSAR_016779 [Trichomalopsis s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold328_size205007supercontigscaffold328_size205007:35905..36336 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold328_size205007-snap-gene-0.19-mRNA-1maker-scaffold328_size205007-snap-gene-0.19-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold328_size205007:35905..36336-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold328_size205007-snap-gene-0.19 ID=maker-scaffold328_size205007-snap-gene-0.19|Name=chitinase isoform x1|organism=Tigriopus kingsejongensis|type=gene|length=432bp|location=Sequence derived from alignment at scaffold328_size205007:35905..36336- (Tigriopus kingsejongensis)
GTCTTGGTCAGACAGCAGTCATGAAGGTTCTCATCCTGTCTGCAATCTTC TGGTCGATTGCCATCCAGGCTGGATCATCGGTGTCTACACGGCAGCACGA CAAGAAGGTGGTCTGCTACTATGGTAGTTGGGCTCACTATCAGTAATGGA ACTCAGATGAAAGAAATCTGCCCATGATAGGTGCCAAAAAACTCTGCTCT CCATTTTAGGGAGGAACCTGGCCGCTTCGATGTGACTTGGGTGGACACTG ACCTCTGCACGCACGGATTATACGCCTATGCTGATATCGATACCAACTCT TGGTTCCTCATGCCTACTGATCCCTGGTACGATCTGGGCCCCAGTGACTG TGGACCAGGGGAGTGTAACTTTGACTCCTACCGCCGTTTTACTGCCTTGG CCTCGGAGACATTCGTGCCCATGCTCTCAGTT
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Synonyms
The feature 'chitinase isoform x1' has the following synonyms
Synonym
Tk09617
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