upstream activation factor subunit uaf30, maker-scaffold338_size202645-snap-gene-1.16 (gene) Tigriopus kingsejongensis

Overview
Nameupstream activation factor subunit uaf30
Unique Namemaker-scaffold338_size202645-snap-gene-1.16
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of upstream activation factor subunit uaf30 vs. L. salmonis genes
Match: EMLSAG00000009844 (supercontig:LSalAtl2s:LSalAtl2s63:310844:311707:-1 gene:EMLSAG00000009844 transcript:EMLSAT00000009844 description:"maker-LSalAtl2s63-augustus-gene-3.13")

HSP 1 Score: 145.591 bits (366), Expect = 6.508e-43
Identity = 67/96 (69.79%), Postives = 76/96 (79.17%), Query Frame = 0
Query:  166 EDEKGEPKPKKKRGGGGGGGFIKPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHMS 261
            ED K     +K +GGGG  GF KPL LS DLA IVG++ APRHEVVKQVWAYIK + LQDPKNKQFA CD+KL KVIG+ KF+CFGMAK+LK HMS
Sbjct:  148 EDFKPTKAKRKSKGGGGNTGFTKPLNLSADLAIIVGKDMAPRHEVVKQVWAYIKENKLQDPKNKQFAICDEKLKKVIGETKFKCFGMAKYLKSHMS 243          
BLAST of upstream activation factor subunit uaf30 vs. L. salmonis genes
Match: EMLSAG00000001079 (supercontig:LSalAtl2s:LSalAtl2s117:677548:677954:-1 gene:EMLSAG00000001079 transcript:EMLSAT00000001079 description:"maker-LSalAtl2s117-augustus-gene-7.31")

HSP 1 Score: 95.9005 bits (237), Expect = 9.205e-26
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 0
Query:  183 GGGFIKPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHMS 261
            G G  K +KLS +LA +VG++ A R E +K +WAY+K HNLQDP+NKQ+   D K+ K+ G+ + R FGMAKFLK+H+S
Sbjct:    4 GSGLTKTMKLSNELAXVVGKKEASRAECIKLLWAYLKKHNLQDPENKQYFTPDKKMAKIFGEDRIRAFGMAKFLKEHLS 82          
BLAST of upstream activation factor subunit uaf30 vs. L. salmonis genes
Match: EMLSAG00000002923 (supercontig:LSalAtl2s:LSalAtl2s1687:28882:29139:-1 gene:EMLSAG00000002923 transcript:EMLSAT00000002923 description:"augustus_masked-LSalAtl2s1687-processed-gene-0.0")

HSP 1 Score: 93.5893 bits (231), Expect = 7.323e-25
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 0
Query:  183 GGGFIKPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHMS 261
            G G  K +KLS +LA +VG++ A R E +K +WAY+K HNLQDP+NKQ+   D K+ K+ G  + R FGMAKFLK+H+S
Sbjct:    4 GSGLTKTMKLSNELADVVGKKEASRAECIKLLWAYLKKHNLQDPENKQYFTPDKKMAKIFGADRIRAFGMAKFLKEHIS 82          
BLAST of upstream activation factor subunit uaf30 vs. L. salmonis genes
Match: EMLSAG00000008620 (supercontig:LSalAtl2s:LSalAtl2s530:741339:741623:1 gene:EMLSAG00000008620 transcript:EMLSAT00000008620 description:"augustus_masked-LSalAtl2s530-processed-gene-7.4")

HSP 1 Score: 56.9954 bits (136), Expect = 4.696e-11
Identity = 23/54 (42.59%), Postives = 36/54 (66.67%), Query Frame = 0
Query:  207 RHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHM 260
            R + +  +W Y+K H+LQ+  NKQF   D K+ K++G+ + R FG+ K LKDH+
Sbjct:   39 RAKCIYLLWVYLKNHHLQELTNKQFFTIDKKMAKILGKDRIRSFGINKVLKDHL 92          
BLAST of upstream activation factor subunit uaf30 vs. L. salmonis genes
Match: EMLSAG00000005264 (supercontig:LSalAtl2s:LSalAtl2s2815:1325:3174:1 gene:EMLSAG00000005264 transcript:EMLSAT00000005264 description:"maker-LSalAtl2s2815-augustus-gene-0.2")

HSP 1 Score: 55.0694 bits (131), Expect = 5.111e-9
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 0
Query:  191 KLSEDLAAIVG-QESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHMSPLD 264
            +LS  L+++ G      R +VV++VW YIK  NLQD   K   KCDDKL ++  + +F    + + L  HM  L+
Sbjct:  323 RLSPTLSSLCGGVRKLSRRDVVRKVWVYIKKRNLQDSNRKHIVKCDDKLRELSNEDEFDYRRLFRHLDSHMFGLE 397          
BLAST of upstream activation factor subunit uaf30 vs. SwissProt
Match: gi|74626867|sp|O74503.1|UAF30_SCHPO (RecName: Full=Upstream activation factor subunit spp27; AltName: Full=Upstream activation factor 27 KDa subunit; Short=p27; AltName: Full=Upstream activation factor 30 KDa subunit; Short=p30; AltName: Full=Upstream activation factor subunit uaf30)

HSP 1 Score: 78.5666 bits (192), Expect = 3.981e-16
Identity = 51/137 (37.23%), Postives = 72/137 (52.55%), Query Frame = 0
Query:  127 AAAAKAAAAKTTPA-KTAGAKAKPTDSDEDDEPEAEGEKAEDEKGEPKPKKKRGGGGGGGFI-KPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHMS 261
            A + K +  K  PA KT G +A    ++E  +P A+  +   E GE   K+KR        + KP+KLS  LA  +G E   R + VK++W YIK H+LQDP +K+   CDDKL  V        F M K+L + M+
Sbjct:   57 APSEKESLEKQAPARKTKGKRATENGTEEGKKP-AKRTRKRKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHMFTMNKYLTNLMT 192          
BLAST of upstream activation factor subunit uaf30 vs. SwissProt
Match: gi|74645010|sp|Q08747.1|UAF30_YEAST (RecName: Full=Upstream activation factor subunit UAF30; AltName: Full=Upstream activation factor 30 KDa subunit; Short=p30)

HSP 1 Score: 74.3294 bits (181), Expect = 1.035e-14
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 0
Query:  160 AEGEKAEDE--KGEPKPKKKRGGGGGGGFIKPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHMS 261
            + GE+  D   KG    KKK          + + LS+ LA+++G+    R EVV+++WAYIK HNLQ+P NK+   CD+KL  ++G K    F M K L  HM+
Sbjct:   92 SSGEEKNDSETKGTHVEKKKGTVSKSPISTRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG-KSTNMFEMHKILASHMT 194          
BLAST of upstream activation factor subunit uaf30 vs. SwissProt
Match: gi|2497196|sp|Q05024.1|TRI1_YEAST (RecName: Full=Protein TRI1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.706e-11
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 0
Query:  187 IKPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHM 260
            ++ + LS  L   +G E  PR +VVK +W YIK H+LQ+PK+++   CD+K+  + G KK   F M K L  H+
Sbjct:  121 VRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG-KKMTMFSMNKLLTKHL 193          
BLAST of upstream activation factor subunit uaf30 vs. SwissProt
Match: gi|73622093|sp|Q9FMT4.1|SNF12_ARATH (RecName: Full=SWI/SNF complex component SNF12 homolog)

HSP 1 Score: 55.4546 bits (132), Expect = 1.156e-7
Identity = 24/73 (32.88%), Postives = 40/73 (54.79%), Query Frame = 0
Query:  190 LKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHMSP 262
             KLS  L  ++G E   R  ++  +W Y+K   LQ+P +  F  CD  L KV G++K +   +++ +  H+SP
Sbjct:  319 FKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSP 391          
BLAST of upstream activation factor subunit uaf30 vs. nr
Match: gi|225709960|gb|ACO10826.1| (Upstream activation factor subunit UAF30 [Caligus rogercresseyi])

HSP 1 Score: 175.252 bits (443), Expect = 1.428e-50
Identity = 120/258 (46.51%), Postives = 155/258 (60.08%), Query Frame = 0
Query:    4 IAGSELKRKVEAILKEADLETTSNKKVRMQLEADLKADLTTRKEEINKIIQEVMNEMDSEDEEADGDEDDEEAADDDEEPAEPEVKKAKNGAASKAKAPLAKAQPAKAAAAKAAPATKAAPAKAAAAKAAAAKTTPAKTAGAKAKPTDSDEDDEPEAEGEKAEDEKGEPKPKKKRGGGGGGGFIKPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHMS 261
            ++ SELK +V AILK+ADLE+TS KKVR  LE     DL++RKEE+N IIQEV   MD  +EE   +++  + + D E    P     K  A +K +            + +   A+K+   KA  AK+   K +   ++    KPT +                      +K +GGGGG GF KPL LSEDLAAIVG++ APRHEVVKQVWAYIK +NLQDP NKQFA CD+KL KVIG+KKF+CFGMAK+ K+HMS
Sbjct:    3 VSRSELKVRVTAILKDADLESTSAKKVRKSLEDAFDTDLSSRKEEVNAIIQEV---MDENEEEDKSEDEGGKQSSDYEPEESPAPPPKKKKAPAKKRKGNDSDSDDDNESEEEWSASKSKAKKATPAKSRKRKDSDDNSSDEDFKPTKA---------------------KRKSKGGGGGNGFTKPLNLSEDLAAIVGKDVAPRHEVVKQVWAYIKENNLQDPSNKQFAICDEKLKKVIGEKKFKCFGMAKYFKNHMS 236          
BLAST of upstream activation factor subunit uaf30 vs. nr
Match: gi|936705708|ref|XP_014230817.1| (upstream activation factor subunit spp27 [Trichogramma pretiosum])

HSP 1 Score: 152.14 bits (383), Expect = 2.411e-41
Identity = 105/278 (37.77%), Postives = 156/278 (56.12%), Query Frame = 0
Query:    1 MSEIAGSELKRKVEAILKEADLETTSNKKVRMQLEADLKADLTTRKEEINKIIQEVMNEMDSEDEEADGDE------------------DDEEAADDDEEPAEPEVKKAKNGAASKAKAPLAKAQPAKAAAAKAAPATKAAPAKAAAAKAAAAKTTPAKTAGAKAKPTDSDEDDEPEAEGEKAEDEKGEPKPKKKRGGGGGGGFIKPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHM 260
            M++I+  EL++++ AILK+ADL +TS KKVR+Q+E  L  DLT RK+EI++++ + + E     ++ DG +                  ++EE  +++EE  +P  +  K G ASK K     +   ++A+ + A   + +P K   +    A     K    K   +DSDED          + +K  P    K+GG  G G+ +   LS +LA++VG +   RHEVVK+VWA IK  NL DPKNKQFA CDD L+KVIG K+FR FGM K+LK+H 
Sbjct:    1 MADISKDELRKEITAILKDADLTSTSAKKVRLQIEKKLDVDLTERKKEIDELVMDCLQE-----KQQDGKKKKAASEESEDGEEEEEEEEEEEEEEEEEEEKKPAKRGPKKGTASKRKK--GSSDDEESASDEDASDEEYSPKKVKRSAKKGAGKAGKKGKKGKNSDSDSDED--------WGKSKKATPA---KKGGAKGSGYTRAYTLSAELASLVGSKQMARHEVVKKVWAIIKERNLYDPKNKQFAICDDDLMKVIGVKRFRTFGMMKYLKNHF 260          
BLAST of upstream activation factor subunit uaf30 vs. nr
Match: gi|1314955066|ref|XP_023178763.1| (upstream activation factor subunit spp27 [Drosophila hydei])

HSP 1 Score: 147.132 bits (370), Expect = 1.529e-39
Identity = 102/266 (38.35%), Postives = 147/266 (55.26%), Query Frame = 0
Query:    1 MSEIAGSELKRKVEAILKEADLETTSNKKVRMQLEADLKADLTTRKEEINKIIQEVMNEMDSEDEEADGDEDDEEAAD--DDEEPAEP-EVKKAKNGAASKAKAPLAKAQPAKAAAAKAAPATKAAPAKAAAAKAAAAKTTPAKTAGAKAKPTDSDEDDEPEAEGEKAEDEKGEPKPKKKRGGGGG---GGFIKPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHM 260
            MS+I+ ++L+ +++++LK+ADL T S K+VR Q+E  L   L +RK+E +KI+ EV+NE   ED++ D D+  +  A+  DD EP+E  EV  +      K  AP  + QP K                    K +A K   +  A      +D+  D + E      +    + K  K  G G G    GF +   LS +L+A++G +S PRHEVVK+VWA IK  +L DPKNKQFA CDD+L+KV+  K+FR FGM K LK H 
Sbjct:    1 MSDISSTQLRTEIQSVLKDADLSTISAKRVREQVEGKLNCSLLSRKKEFDKIVMEVINEQQEEDDDDDDDDGKDPDAEPADDSEPSEEDEVASSSEEEKKKKPAPKKRPQPTKH-------------------KVSAKKKRKSLNADDSGTESDAGSDSDYEV----VKKPAPKKKAAKTAGSGTGRKSTGFTRAYNLSPELSALMGADSLPRHEVVKKVWAIIKERDLYDPKNKQFAICDDELMKVMKVKRFRTFGMLKHLKPHF 243          
BLAST of upstream activation factor subunit uaf30 vs. nr
Match: gi|195126905|ref|XP_002007909.1| (uncharacterized protein Dmoj_GI13202 [Drosophila mojavensis] >gi|1060224376|ref|XP_017861502.1| PREDICTED: upstream activation factor subunit spp27 [Drosophila arizonae] >gi|193919518|gb|EDW18385.1| uncharacterized protein Dmoj_GI13202 [Drosophila mojavensis])

HSP 1 Score: 146.747 bits (369), Expect = 2.042e-39
Identity = 101/263 (38.40%), Postives = 147/263 (55.89%), Query Frame = 0
Query:    1 MSEIAGSELKRKVEAILKEADLETTSNKKVRMQLEADLKADLTTRKEEINKIIQEVMNEMDSEDEEADGDEDDEEAAD--DDEEPAEP-EVKKAKNGAASKAKAPLAKAQPAKAAAAKAAPATKAAPAKAAAAKAAAAKTTPAKTAGAKAKPTDSDEDDEPEAEGEKAEDEKGEPKPKKKRGGGGGGGFIKPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHM 260
            MS+I+ ++L+ +++++LK+ADL T S K+VR Q+E+ L   L +RK+E +KI+ EV+NE   ED++ D D+  +  A+  DD EP+E  EV  +      K  AP  + QP K                    K +A K   +  A      +D+  D + E   +K   +K   K      G    GF +   LS +L+A++G +S PRHEVVK+VWA IK  +L DPKNKQFA CDD+L+KV+  K+FR FGM K LK H 
Sbjct:    1 MSDISSTQLRTEIQSVLKDADLSTISAKRVREQVESKLNCSLLSRKKEFDKIVMEVINEQQEEDDDDDDDDGKDPDAEPADDSEPSEEDEVASSSEEEKKKKPAPKKRPQPTKH-------------------KVSAKKKRKSLNADDSGTESDAGSDSDYEV-VKKPAPKKKAAKSAGSGTGRKSTGFTRAYNLSPELSALMGADSLPRHEVVKKVWAIIKERDLYDPKNKQFAICDDELMKVMKVKRFRTFGMLKHLKPHF 243          
BLAST of upstream activation factor subunit uaf30 vs. nr
Match: gi|225713048|gb|ACO12370.1| (YMR233W [Lepeophtheirus salmonis])

HSP 1 Score: 145.591 bits (366), Expect = 6.095e-39
Identity = 67/96 (69.79%), Postives = 76/96 (79.17%), Query Frame = 0
Query:  166 EDEKGEPKPKKKRGGGGGGGFIKPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHMS 261
            ED K     +K +GGGG  GF KPL LS DLA IVG++ APRHEVVKQVWAYIK + LQDPKNKQFA CD+KL KVIG+ KF+CFGMAK+LK HMS
Sbjct:  148 EDFKPTKAKRKSKGGGGNTGFTKPLNLSADLAIIVGKDMAPRHEVVKQVWAYIKENKLQDPKNKQFAICDEKLKKVIGETKFKCFGMAKYLKSHMS 243          
BLAST of upstream activation factor subunit uaf30 vs. nr
Match: gi|1062666545|ref|XP_017956466.1| (PREDICTED: upstream activation factor subunit spp27 [Drosophila navojoa])

HSP 1 Score: 145.591 bits (366), Expect = 6.230e-39
Identity = 100/263 (38.02%), Postives = 146/263 (55.51%), Query Frame = 0
Query:    1 MSEIAGSELKRKVEAILKEADLETTSNKKVRMQLEADLKADLTTRKEEINKIIQEVMNEMDSEDEEADGDEDDEEAAD--DDEEPAEP-EVKKAKNGAASKAKAPLAKAQPAKAAAAKAAPATKAAPAKAAAAKAAAAKTTPAKTAGAKAKPTDSDEDDEPEAEGEKAEDEKGEPKPKKKRGGGGGGGFIKPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHM 260
            MS+I+ ++L+ +++++LK+ADL T S K+VR Q+E+ L   L +RK+E +KI+ EV+NE   ED++ D D+  +  A+  DD EP+E  EV  +      K  AP  + QP K                    K +  K   +  A      +D+  D + E   +K   +K   K      G    GF +   LS +L+A++G +S PRHEVVK+VWA IK  +L DPKNKQFA CDD+L+KV+  K+FR FGM K LK H 
Sbjct:    1 MSDISSTQLRTEIQSVLKDADLSTISAKRVREQVESKLNCSLLSRKKEFDKIVMEVINEQQEEDDDDDDDDGKDPDAEPADDSEPSEEDEVASSSEEEKKKKPAPKKRPQPTKH-------------------KVSTKKKRKSLNADDSGTESDAGSDSDYEV-VKKPAPKKKAAKSAGSGTGRKSTGFTRAYNLSPELSALMGADSLPRHEVVKKVWAIIKERDLYDPKNKQFAICDDELMKVMKVKRFRTFGMLKHLKPHF 243          
BLAST of upstream activation factor subunit uaf30 vs. nr
Match: gi|170058412|ref|XP_001864911.1| (conserved hypothetical protein [Culex quinquefasciatus] >gi|167877491|gb|EDS40874.1| conserved hypothetical protein [Culex quinquefasciatus])

HSP 1 Score: 145.206 bits (365), Expect = 1.009e-38
Identity = 101/260 (38.85%), Postives = 147/260 (56.54%), Query Frame = 0
Query:    1 MSEIAGSELKRKVEAILKEADLETTSNKKVRMQLEADLKADLTTRKEEINKIIQEVMNEMDSEDEEADGDEDDEEAADDDEEPAEPEVKKAKNGAASKAKAPLAKAQPAKAAAAKAAPATKAAPAKAAAAKAAAAKTTPAKTAGAKAKPTDSDEDDEPEAEGEKAEDEKGEPKPKKKRGGGGGGGFIKPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHM 260
            M E    EL++++  ILK+A+LE T+ KKVR+QLE +LK DL+ RK+E++ ++ E +N  D   EE + +E+ E+ ++ +E   E   KK K GA +K  AP +K +    +  ++         K       +AK  P +     +  +DSDED +     + A+ +                G+ +P  LS +LAAI G E+ PRHEVVK+VWA IK  NL DPKNKQ+A CD +L KVIG K+FR FGM K+LK H 
Sbjct:    1 MPEPTKDELRKEIATILKDANLEETAAKKVRLQLEDNLKCDLSQRKKEVDDLVMEYVNAQDESGEEEEQEEEAEDKSESEESEDEAPKKKGKRGAPAKRGAPASKKKKGSDSEEESEEEASDDDYKPTKGAKGSAKKGPGRKKKGGSD-SDSDEDWKKSKPAKGAKKKGAA----------KSTGYTRPYNLSPELAAICGAEALPRHEVVKKVWAIIKERNLYDPKNKQYAICDSELQKVIGVKRFRTFGMLKYLKPHF 249          
BLAST of upstream activation factor subunit uaf30 vs. nr
Match: gi|1061130008|ref|XP_017889682.1| (PREDICTED: upstream activation factor subunit spp27 [Ceratina calcarata])

HSP 1 Score: 144.05 bits (362), Expect = 3.242e-38
Identity = 99/269 (36.80%), Postives = 149/269 (55.39%), Query Frame = 0
Query:    1 MSEIAGSELKRKVEAILKEADLETTSNKKVRMQLEADLKADLTTRKEEINKIIQEVMNEMDSEDEEADGDEDDEEAADDDEEPAEPEVKKAKNGAASKAKAPLAKAQPAKAAAAKAAPATKAAPAKAAAAKAAAAKTTPAKTAGAKAKPTDSDEDDEPEAEGEKAEDEKGEPKPKKKRGGGGGGG---------FIKPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHM 260
            M++I+  EL++++ AILK+ADL T S KKVR+Q+E  L  DLT RK+E++ ++ E + E      + DG +  ++ A ++ E  E E ++       + +   AK  PAK    K    +      A+   A+  + +P K      K     +  +  ++ +  ED     K KK +GGG   G         + + + LS +LAA+VG E   RHEVVK++W+ IK  NL DPKNKQ+A CDD+LLKVIG K+FR FGM K+LK+H 
Sbjct:    1 MADISNEELRKEITAILKDADLTTMSAKKVRLQIEGKLDIDLTERKKEVDTLVMECLQE------KQDGAKKKKKTASEESEDGEEEEEEGSEEEEEEEEKKPAKRSPAKKPVNKRKKGSSDDEESASDDDASDEEYSPKKAKATPKKGKPGKKGKKKGSDSDSDEDW---GKNKKAQGGGAKRGASGGKGKGGYTRAITLSPELAAVVGAEQMARHEVVKKIWSIIKERNLYDPKNKQYAICDDELLKVIGVKRFRTFGMMKYLKNHF 260          
BLAST of upstream activation factor subunit uaf30 vs. nr
Match: gi|195377146|ref|XP_002047353.1| (uncharacterized protein Dvir_GJ11979 [Drosophila virilis] >gi|194154511|gb|EDW69695.1| uncharacterized protein Dvir_GJ11979 [Drosophila virilis])

HSP 1 Score: 143.28 bits (360), Expect = 4.824e-38
Identity = 96/264 (36.36%), Postives = 143/264 (54.17%), Query Frame = 0
Query:    1 MSEIAGSELKRKVEAILKEADLETTSNKKVRMQLEADLKADLTTRKEEINKIIQEVMNEMDSEDEEAD---GDEDDEEAADDDEEPAEPEVKKAKNGAASKAKAPLAKAQPAKAAAAKAAPATKAAPAKAAAAKAAAAKTTPAKTAGAKAKPTDSDEDDEPEA-EGEKAEDEKGEPKPKKKRGGGGGGGFIKPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHM 260
            MS+I+ ++L+ +++++LK+ADL T S K+VR Q+E+ L   L +RK+E +KI+ EV+NE   E+++ D   G + D E  DD +   E EV  +      K  AP  + QP K                    K +A K   +  A      +D+  D + E  +    + +  +        G    GF +   LS +L+A++G +S PRHEVVK+VWA IK  +L DPKNKQFA CDD+L+KV+  K+FR FGM K LK H 
Sbjct:    1 MSDISSTQLRSEIQSVLKDADLSTISAKRVREQVESKLNCSLLSRKKEFDKIVMEVINEQQEEEDDDDEDDGKDPDAEPQDDSDPSEEDEVASSSEEEKKKKPAPKKRPQPTKH-------------------KLSAKKKRKSLNADDSGTESDAGSDSDYEVVKKPAPKKKAAKSAGSGSGTGRKSTGFTRAYNLSPELSALMGADSLPRHEVVKKVWAIIKERDLYDPKNKQFAICDDELMKVMKVKRFRTFGMLKHLKPHF 245          
BLAST of upstream activation factor subunit uaf30 vs. nr
Match: gi|1189083042|ref|XP_020809770.1| (upstream activation factor subunit spp27 [Drosophila serrata] >gi|1189083044|ref|XP_020809771.1| upstream activation factor subunit spp27 [Drosophila serrata])

HSP 1 Score: 139.428 bits (350), Expect = 1.215e-36
Identity = 97/263 (36.88%), Postives = 145/263 (55.13%), Query Frame = 0
Query:    1 MSEIAGSELKRKVEAILKEADLETTSNKKVRMQLEADLKADLTTRKEEINKIIQEVMNEMDSEDEEADGDEDDEEAADDDEEPAEPEVKKAKNGAASKAKAPLAKAQPAKAAAAKAAPATKAAPAKAAAAKAAAAKTTPAKTAGAKAKPTDSDEDDEPEAEGEKAEDEKGEPKPKKKRGGGG---GGGFIKPLKLSEDLAAIVGQESAPRHEVVKQVWAYIKLHNLQDPKNKQFAKCDDKLLKVIGQKKFRCFGMAKFLKDHM 260
            MS+I+  +L+R+++++LK+ADL T S K+VR Q+E  L   L  RK+E ++I+ +V+NE   E+++ + D  D +A  DDE     E  + +N ++S+        + A+    K  P  +  P K         KT  A  +G     T+SD   + + E  K    K + K       G      GF +   LS +L+A++G  S PRHEVVK+VWA IK  +L DPKNKQFA CDD+L+KV+  ++FR FGM K LK H 
Sbjct:    1 MSDISSEDLRREIQSVLKDADLSTISAKRVREQVEGKLNCSLLNRKKEFDRIVMDVINEQQDEEDDEEDDGKDPDADPDDES----ESSEVENMSSSE--------EEAQKQKKKPGPKKRTQPIKHKTGPKKKRKTLNADDSG-----TESDAGSDSDYEVVKKPAAKKKAKSSGTTASGAARKSTGFTRAYNLSPELSALMGAPSLPRHEVVKKVWAIIKERDLYDPKNKQFAICDDELMKVMKIRRFRTFGMLKHLKPHF 246          
The following BLAST results are available for this feature:
BLAST of upstream activation factor subunit uaf30 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAG000000098446.508e-4369.79supercontig:LSalAtl2s:LSalAtl2s63:310844:311707:-1... [more]
EMLSAG000000010799.205e-2653.16supercontig:LSalAtl2s:LSalAtl2s117:677548:677954:-... [more]
EMLSAG000000029237.323e-2553.16supercontig:LSalAtl2s:LSalAtl2s1687:28882:29139:-1... [more]
EMLSAG000000086204.696e-1142.59supercontig:LSalAtl2s:LSalAtl2s530:741339:741623:1... [more]
EMLSAG000000052645.111e-937.33supercontig:LSalAtl2s:LSalAtl2s2815:1325:3174:1 ge... [more]
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BLAST of upstream activation factor subunit uaf30 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
gi|74626867|sp|O74503.1|UAF30_SCHPO3.981e-1637.23RecName: Full=Upstream activation factor subunit s... [more]
gi|74645010|sp|Q08747.1|UAF30_YEAST1.035e-1439.42RecName: Full=Upstream activation factor subunit U... [more]
gi|2497196|sp|Q05024.1|TRI1_YEAST1.706e-1140.54RecName: Full=Protein TRI1[more]
gi|73622093|sp|Q9FMT4.1|SNF12_ARATH1.156e-732.88RecName: Full=SWI/SNF complex component SNF12 homo... [more]
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BLAST of upstream activation factor subunit uaf30 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|225709960|gb|ACO10826.1|1.428e-5046.51Upstream activation factor subunit UAF30 [Caligus ... [more]
gi|936705708|ref|XP_014230817.1|2.411e-4137.77upstream activation factor subunit spp27 [Trichogr... [more]
gi|1314955066|ref|XP_023178763.1|1.529e-3938.35upstream activation factor subunit spp27 [Drosophi... [more]
gi|195126905|ref|XP_002007909.1|2.042e-3938.40uncharacterized protein Dmoj_GI13202 [Drosophila m... [more]
gi|225713048|gb|ACO12370.1|6.095e-3969.79YMR233W [Lepeophtheirus salmonis][more]
gi|1062666545|ref|XP_017956466.1|6.230e-3938.02PREDICTED: upstream activation factor subunit spp2... [more]
gi|170058412|ref|XP_001864911.1|1.009e-3838.85conserved hypothetical protein [Culex quinquefasci... [more]
gi|1061130008|ref|XP_017889682.1|3.242e-3836.80PREDICTED: upstream activation factor subunit spp2... [more]
gi|195377146|ref|XP_002047353.1|4.824e-3836.36uncharacterized protein Dvir_GJ11979 [Drosophila v... [more]
gi|1189083042|ref|XP_020809770.1|1.215e-3636.88upstream activation factor subunit spp27 [Drosophi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold338_size202645supercontigscaffold338_size202645:166743..167972 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold338_size202645-snap-gene-1.16-mRNA-1maker-scaffold338_size202645-snap-gene-1.16-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold338_size202645:166743..167972+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold338_size202645-snap-gene-1.16 ID=maker-scaffold338_size202645-snap-gene-1.16|Name=upstream activation factor subunit uaf30|organism=Tigriopus kingsejongensis|type=gene|length=1230bp|location=Sequence derived from alignment at scaffold338_size202645:166743..167972+ (Tigriopus kingsejongensis)
ATGAGCGAGATCGCCGGCTCGGAGCTCAAGCGGAAGGTGGAGGCCATCCT CAAGGAGGCCGACCTCGAGACCACCTCCAACAAGAAGGTCCGCATGCAGT TGGAGGCTGACCTCAAGGCCGACCTGACCACGCGCAAGGAGGAGATCAAC AAGATCATCCAGGAGGTCATGAACGAGATGGACTCCGAGGACGAGGAGGC CGACGGGGACGAGGACGACGAGGAGGCCGCCGACGACGACGAGGAGCCCG CCGAGCCCGAGGTCAAGAAAGCCAAGAATGGGGCCGCCAGCAAGGCCAAG GCTCCGCTGGCCAAGGCTCAGCCGGCCAAGGCTGCGGCGGCTAAGGCCGC CCCGGCCACCAAGGCTGCCCCGGCCAAGGCTGCGGCGGCCAAGGCCGCGG CGGCCAAAACCACGCCGGCCAAGACGGCCGGCGCCAAAGCCAAACCGACC GACAGCGACGAAGACGACGAGCCCGAGGCCGAGGGCGAGAAGGCCGAAGA CGAGAAGGTGGAGGACGAGGAGGCCGAGGAAGACGAGGCCCCCGCGGAGG ATGAGGAGAGCGAGGATGACGCCCGCCCCAACCAGGGCCGGGGACGCAAG GCGGCTTCGCCTCAAAAGAAGGCCAAGGGCCAAGAGTCCGACGCCTCCTC CAACTTCTCGGACGAGTTGGCCTCCAATGCCGAGGAGAGCTCGGGCGAAG ACTCGGGCTCGGACTACGAGCCCGACGGCATGATGCGGGCGGCCAAACGC CAGAGCAAGACCACGCCCAAGGGCGGCCGTGGGCGGGGCCGGGCCCGGGC CACCAAGCGCACCCGCGGCTCCGACGACTCCTCGGCCGAGAGCTCGGGCG AGGAGTGGGGCTCGCAGAAGAAGAAACGCGGCGGCGGAGGCGGCCGGAGT CGGGCCAAGGCCGCCTCGGGCTCGGACGACGACAGTGAGGGCGAGCCCAA GCCCAAGAAGAAGCGCGGAGGCGGCGGCGGGGGGGGCTTCATCAAGCCCT TGAAATTATCCGAGGACCTGGCCGCCATCGTGGGCCAGGAGTCCGCGCCC CGCCACGAAGTGGTCAAGCAGGTGTGGGCCTACATCAAGTTGCACAATCT CCAAGACCCCAAGAACAAGCAGTTCGCCAAGTGTGACGACAAACTCCTGA AGGTCATCGGGCAGAAGAAGTTCCGATGCTTCGGCATGGCCAAGTTTCTC AAAGACCACATGTCGCCCTTAGACAAATAG
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Synonyms
The feature 'upstream activation factor subunit uaf30' has the following synonyms
Synonym
Tk00727
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