1-deoxy-d-xylulose 5-phosphate reductoisomerase, maker-scaffold3411_size8807-snap-gene-0.1 (gene) Tigriopus kingsejongensis

Overview
Name1-deoxy-d-xylulose 5-phosphate reductoisomerase
Unique Namemaker-scaffold3411_size8807-snap-gene-0.1
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of 1-deoxy-d-xylulose 5-phosphate reductoisomerase vs. L. salmonis genes
Match: EMLSAG00000004815 (supercontig:LSalAtl2s:LSalAtl2s254:239489:247168:1 gene:EMLSAG00000004815 transcript:EMLSAT00000004815 description:"maker-LSalAtl2s254-augustus-gene-2.19")

HSP 1 Score: 102.064 bits (253), Expect = 4.074e-25
Identity = 71/241 (29.46%), Postives = 114/241 (47.30%), Query Frame = 0 
Query:    1 LEEFEDKVDKLASGDGDENSWIGNLYNKFKGSFMGDIDNSIVE------EEVSNHPSWTTNSTLAAD------NSTMATNGTEHAIAKRSLEDEDVTIDDDEDD--------EFVKGLVGES-KCRTKFWRCVGKVAKGSLHHMQEPGGLSGAFQKTMFRMAFHGGFGNVWNALMTIPEARNVKRCMNAQEECMNYEALHIELDATSKFASEHTGKQRLIVNPEMVENQDPRDGAEQFDED 220
            LE+ E++VDKL  G  DE SWI +LYNKFKG+   +  +S  E      E  +   +W    T   D      NST+  +G EH+   R +++E    +++ DD        + ++G   +   C+ K ++C+  V +G  HH ++ GG+    QK                       AR V+RC NAQ +C+ +  L  E++  S        ++RL++N E VEN D  +G+  +D D
Sbjct:  501 LEDLEERVDKLVVGQNDETSWISSLYNKFKGTVSNNDTDSSDEDGLEGLEPPNLDETWGLADTNLFDEEDSNQNSTLTESG-EHSRNPRXVDEEVYETENELDDNNGIVQNLDLIEGFFTDKDSCKFKLYKCIAGVVEGGYHHAKKSGGIYNYAQK-----------------------ARKVQRCFNAQNDCLTHNILLNEVNDPSMDPESKGSQKRLLINTEYVENLDKSNGSTPYDPD 717
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BLAST of 1-deoxy-d-xylulose 5-phosphate reductoisomerase vs. nr
Match: gi|1325327618|ref|XP_023345667.1| (uncharacterized protein LOC111714735 [Eurytemora affinis])

HSP 1 Score: 101.679 bits (252), Expect = 4.305e-21
Identity = 40/105 (38.10%), Postives = 72/105 (68.57%), Query Frame = 0 
Query:  104 CRTKFWRCVGKVAKGSLHHMQEPGGLSGAFQKTMFRMAFHGGFGNVWNALMTIPEARNVKRCMNAQEECMNYEALHIELDATSKFASEHTGKQRLIVNPEMVENQ 208
            C+ + WRC+  V +  + H+ +P G++G  +K++F+MAFHGG  NVW++LMTIPEAR++ +C+   +EC+ Y+ L  E    +K +++   ++R IV+PE ++ +
Sbjct:  611 CKIQVWRCLSGVLESGVKHLDKPEGITGLVKKSLFKMAFHGGLSNVWSSLMTIPEARSITKCVREHDECVTYQVLSKE----TKNSNQDGSRKRFIVSPEFLKGK 711
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BLAST of 1-deoxy-d-xylulose 5-phosphate reductoisomerase vs. nr
Match: gi|1325327608|ref|XP_023345662.1| (uncharacterized protein LOC111714731 isoform X1 [Eurytemora affinis])

HSP 1 Score: 70.4774 bits (171), Expect = 1.536e-10
Identity = 46/142 (32.39%), Postives = 74/142 (52.11%), Query Frame = 0 
Query:    1 LEEFEDKVDKLA-SGDGDENSWIGNLYNKFKGSFMGDIDNSIVEEEVSNHPSWTTNST----LAADNSTMATNGTEHAIA------KRSLEDEDVTIDDDEDDEFVKGLVGESKCRTKFWRCVGKVAKGSLHHMQEPGGLSG 131
            LE+FE+K+D++A + +GDENSWI  LYN+F G F  DID+S+ E ++        + T    +    +   +   E  +       +R+ E E+ T ++  + E       E  CR + WRC+  V +  LH+M +P GL G
Sbjct:  218 LEDFEEKIDRIAENNNGDENSWISKLYNQFSGEF-NDIDDSLTEGDLDGLEPPILDETWGLGIRTKQNKTGSTVVEEPVPLDSSRKRRTAEAEENTAENVVEAE------DEEACRVEMWRCLSAVIEHGLHYMDKPEGLMG 352
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BLAST of 1-deoxy-d-xylulose 5-phosphate reductoisomerase vs. nr
Match: gi|1325327610|ref|XP_023345663.1| (uncharacterized protein LOC111714731 isoform X2 [Eurytemora affinis])

HSP 1 Score: 69.3218 bits (168), Expect = 2.820e-10
Identity = 46/142 (32.39%), Postives = 74/142 (52.11%), Query Frame = 0 
Query:    1 LEEFEDKVDKLA-SGDGDENSWIGNLYNKFKGSFMGDIDNSIVEEEVSNHPSWTTNST----LAADNSTMATNGTEHAIA------KRSLEDEDVTIDDDEDDEFVKGLVGESKCRTKFWRCVGKVAKGSLHHMQEPGGLSG 131
            LE+FE+K+D++A + +GDENSWI  LYN+F G F  DID+S+ E ++        + T    +    +   +   E  +       +R+ E E+ T ++  + E       E  CR + WRC+  V +  LH+M +P GL G
Sbjct:  142 LEDFEEKIDRIAENNNGDENSWISKLYNQFSGEF-NDIDDSLTEGDLDGLEPPILDETWGLGIRTKQNKTGSTVVEEPVPLDSSRKRRTAEAEENTAENVVEAE------DEEACRVEMWRCLSAVIEHGLHYMDKPEGLMG 276
The following BLAST results are available for this feature:
BLAST of 1-deoxy-d-xylulose 5-phosphate reductoisomerase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000048154.074e-2529.46supercontig:LSalAtl2s:LSalAtl2s254:239489:247168:1... [more]
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BLAST of 1-deoxy-d-xylulose 5-phosphate reductoisomerase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of 1-deoxy-d-xylulose 5-phosphate reductoisomerase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 3
Match NameE-valueIdentityDescription
gi|1325327618|ref|XP_023345667.1|4.305e-2138.10uncharacterized protein LOC111714735 [Eurytemora a... [more]
gi|1325327608|ref|XP_023345662.1|1.536e-1032.39uncharacterized protein LOC111714731 isoform X1 [E... [more]
gi|1325327610|ref|XP_023345663.1|2.820e-1032.39uncharacterized protein LOC111714731 isoform X2 [E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold3411_size8807supercontigscaffold3411_size8807:6827..8557 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteP:isoprenoid biosynthetic process
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold3411_size8807-snap-gene-0.1-mRNA-1maker-scaffold3411_size8807-snap-gene-0.1-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold3411_size8807:6827..8557-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold3411_size8807-snap-gene-0.1 ID=maker-scaffold3411_size8807-snap-gene-0.1|Name=1-deoxy-d-xylulose 5-phosphate reductoisomerase|organism=Tigriopus kingsejongensis|type=gene|length=1731bp|location=Sequence derived from alignment at scaffold3411_size8807:6827..8557- (Tigriopus kingsejongensis)
CTCGAGGAGTTCGAGGACAAGGTCGACAAGCTTGCCAGTGGTGATGGAGA
TGAAAACTCCTGGATTGGCAACCTCTACAACAAGTTCAAGGGATCCTTCA
TGGGAGACATCGACAACAGCATCGTCGAGGAGGAGGTCTCGAACCACCCA
TCTTGGACGACAAGTGGGGACTTGGAGATGTGCACAAGCTCTACAGCGAG
AACAACAGTAAGCTCATCGGAGCTCTTCCCCACCCGCCCTGGGCACTTGA
GCATAACTTTTGTCTCTGTTCCAGACTCCACCCTGGCCGCTGATAACTCC
ACCATGGCCACCAATGGAACCGAGCACGCAATTGCCAAGCGCTCCCTGGA
GGATGAGGATGTGACCATCGATGACGACGAGGATGATGAGTTCGTCAAGG
GACTGGTCGGCGAGTCCAAGTGCCGAACCAAGTTCTGGAGATGCGTTGGC
AAGGTCGCCAAGGGATCCCTTCATCATATGCAAGAGCCCGGCGGTCTCTC
CGGGTATGGATCCACAACTCATTCTATCAATAGCTCCGTTAGACAGTTAC
TAATTTACCTTTCATCTTACCCTTGCAGTGCTTTCCAAAAGACCATGTTC
CGTATGGCTTTCCACGGTGGATTCGGCAATGTTTGGAACGCTCTCATGAC
CATCCCCGAGGTAAAACATTTTTCTCATATTCTTTGCCAGGCACTATAGC
CACTTCTTGAGCATGAAATAATAATGAAAGCAGTGATATATTGATCCTAC
TGTTCGCTCCGTGCTTTGAAATCGATTATTTCGCAACATAATCGATCCTA
CTGTTCGCTCCGTGCTTTGAAATCGATTATTTCGCAACATAATCGATCAC
AAACTCAACAGTCGATTATTTTTGGACATAATTCGACTTTGGCCAAAATC
GAATATTTCCACCCACAATCGATTATTTCCTCACACAATCGATTTTTCTG
GGCCCCTAGGCATTTATTTTCTGGACTCATAGGAATTAGCTCCTGCGGCT
TAATTCCGATCGGAAGTCACTCAAAGTGCATTGTTGGCAATATTCAGAGA
CTGTGGTGATTAATTTCCTGCGATTTTGTTTTAGGCCCGCAACGTGAAGA
GATGCATGAACGCCCAGGAAGAGTGCATGAACTACGAAGCTCTCCACATT
GAGTTGGACGCCACTTCTAAGTTTGCCTCCGAGCACACCGGCAAGCAGCG
TTTGATCGTCAACCCTGAGATGGTTGAGAACCAGGATCCTCGCGATGGGG
CCGAGCAGTTTGACGAGGACATCCGGGAGATGTTTGAGAATGGCGAGTTC
TAAGCACTTCGCAACCCAACGACGAAGAACGATTGCCATGGAAACTGACC
TTTCCCCCCTCAATCCTCATCTGTCTATCGCCTCTGTCTCTGCCTTCACT
TCAAAAATCTCTGTAGATTCTCACATTGATACATATCCCATTGCAAATTG
AGTGGTCAAGAGTCGGCTTGAGCCGTTTTCCCCTTTCTCGCCCGCCGATT
GGCCAAGCTGATTTCGGGGCCACTTCGAAAAAAATCCCTATAAAAAGAAA
ACCAATTCCACACGGTTGGGTTTATGTCTTGGAGCAAGGAAGGACTTGTC
CAGGGAAAACCAACCAGTCTTCGTATGTGAATCTCAAGCAATCTCCTCCG
ATCTTGTGCAGCTAATTAACTTTGACACTGACATTATTACTAGAGCGCAG
CTAAACTAGACCTCTAAATAATACAGTATAC
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Synonyms
The feature '1-deoxy-d-xylulose 5-phosphate reductoisomerase' has the following synonyms
Synonym
Tk12583
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