bardet-biedl syndrome 1 isoform x1, maker-scaffold34_size539781-snap-gene-3.18 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of bardet-biedl syndrome 1 isoform x1 vs. SwissProt
Match: gi|123781076|sp|Q3V3N7.1|BBS1_MOUSE (RecName: Full=Bardet-Biedl syndrome 1 protein homolog) HSP 1 Score: 131.339 bits (329), Expect = 2.020e-34 Identity = 64/160 (40.00%), Postives = 102/160 (63.75%), Query Frame = 0 Query: 17 DRWLTAYEDPLASIYTFSSCITLSDLTGDGDFKLVVADLGSGTYNMKLRVYKGTQLVSIIQLKSAGISISENTIIDLPTGVVAFHMDQNDPKIPAIAVASGSHIYIYKNMRPYFKFTLPTLEIHHSEKELWARSGDMELGGLCDGLQNLRRDIGDSRLTP 176 +WL A+ DP+A+I+TFSSC++L+DL GDG++KLVV DLG G +L+V KG + ++E+ + LP F MDQ++P+ PA+A+ASG +Y+YKN+RPYFKF+LP L + E+++W ++ + ++ L L+ + DI + P Sbjct: 21 SKWLDAHYDPMANIHTFSSCLSLADLHGDGEYKLVVGDLGPGGQQPRLKVLKGPTV------------LTESPLPALPASAATFLMDQHEPRTPALALASGPCVYVYKNLRPYFKFSLPQLPPNPLEQDVWNQAKEDQIDPLT--LKEMLEDIREKADVP 166
BLAST of bardet-biedl syndrome 1 isoform x1 vs. SwissProt
Match: gi|38257662|sp|Q8NFJ9.1|BBS1_HUMAN (RecName: Full=Bardet-Biedl syndrome 1 protein; AltName: Full=BBS2-like protein 2) HSP 1 Score: 122.479 bits (306), Expect = 2.948e-31 Identity = 58/136 (42.65%), Postives = 91/136 (66.91%), Query Frame = 0 Query: 17 DRWLTAYEDPLASIYTFSSCITLSDLTGDGDFKLVVADLGSGTYNMKLRVYKGTQLVSIIQLKSAGISISENTIIDLPTGVVAFHMDQNDPKIPAIAVASGSHIYIYKNMRPYFKFTLPTLEIHHSEKELWARSGD 152 +WL A+ DP+A+I+TFS+C+ L+DL GDG++KLVV DLG G +L+V KG + ++E+ + LP F M+Q++P+ PA+A+ASG +Y+YKN+RPYFKF+LP L + E++LW ++ + Sbjct: 21 SKWLDAHYDPMANIHTFSACLALADLHGDGEYKLVVGDLGPGGQQPRLKVLKGP------------LVMTESPLPALPAAAATFLMEQHEPRTPALALASGPCVYVYKNLRPYFKFSLPQLPPNPLEQDLWNQAKE 144
BLAST of bardet-biedl syndrome 1 isoform x1 vs. SwissProt
Match: gi|75024046|sp|Q9NEZ7.1|BBS1_CAEEL (RecName: Full=Bardet-Biedl syndrome 1 protein homolog) HSP 1 Score: 98.5969 bits (244), Expect = 7.658e-23 Identity = 56/173 (32.37%), Postives = 92/173 (53.18%), Query Frame = 0 Query: 12 MTANADRWLTAYEDPLASIYTFSSCITLSDLTGDGDFKLVVADLGSGTYNMKLRVYKGTQLVSIIQLKSAGISISENTIIDLPTGVVAFHMDQNDPKIPAIAVASGSHIYIYKNMRPYFKFTLPTLEIHHSEKELWARSGDMELGG--LCDGLQNLRRDIGDSRLTPRTQKLL 182 + N +W IY S+C+ + D D KL++A G NMKL+V++ + +SE+++ D+PT +V F D + IP+IAVA+G + IYKN++P++KFT+P+ I+ +E E W + ++ G L L+ L D+ S+LTP +Q L Sbjct: 5 VNVNQSKWTVPVLLKECEIYCPSTCVAFGPILSDNDSKLIIAHGGHRGVNMKLKVFQQLE------------QLSESSLADMPTALVHFINDLSS--IPSIAVAAGPSLLIYKNLKPFYKFTVPSSAINPTESEAWKAVVNKKINGDTLLTVLKRLEDDVAFSKLTPISQTYL 163
BLAST of bardet-biedl syndrome 1 isoform x1 vs. nr
Match: gi|1325332164|ref|XP_023347935.1| (Bardet-Biedl syndrome 1 protein homolog, partial [Eurytemora affinis]) HSP 1 Score: 237.269 bits (604), Expect = 1.731e-75 Identity = 113/187 (60.43%), Postives = 142/187 (75.94%), Query Frame = 0 Query: 7 LANMAMTANADRWLTAYEDPLASIYTFSSCITLSDLTGDGDFKLVVADLGSGTYNMKLRVYKGTQLVSIIQLKSAGISISENTIIDLPTGVVAFHMDQNDPKIPAIAVASGSHIYIYKNMRPYFKFTLPTLEIHHSEKELW--ARSGDMELGGLCDGLQNLRRDIGDSRLTPRTQKLLMINDRQEAQ 191 L N+ +++RWLTA+ DPLA IYTFSSC+ LSDL GDGDF+LV+ADLGSG +NMKLRV+KGTQ ++ENTIIDLPTGVV FHMD N+P+IPAIAVASGSHIYIYKN+RPYFKFTLPTL+I +E+++W A + + + L NLR +IGD+RLT RTQ+LLM++ QE + Sbjct: 5 LDNLLAGPDSERWLTAHNDPLAGIYTFSSCLALSDLGGDGDFRLVIADLGSGEFNMKLRVFKGTQ------------QVTENTIIDLPTGVVTFHMDTNEPRIPAIAVASGSHIYIYKNLRPYFKFTLPTLDIQPAERDIWDQAARDTLNTSQIYENLSNLRNEIGDARLTARTQRLLMLDSLQEVE 179
BLAST of bardet-biedl syndrome 1 isoform x1 vs. nr
Match: gi|1325331882|ref|XP_023347799.1| (Bardet-Biedl syndrome 1 protein homolog isoform X2 [Eurytemora affinis]) HSP 1 Score: 238.424 bits (607), Expect = 4.308e-72 Identity = 113/187 (60.43%), Postives = 142/187 (75.94%), Query Frame = 0 Query: 7 LANMAMTANADRWLTAYEDPLASIYTFSSCITLSDLTGDGDFKLVVADLGSGTYNMKLRVYKGTQLVSIIQLKSAGISISENTIIDLPTGVVAFHMDQNDPKIPAIAVASGSHIYIYKNMRPYFKFTLPTLEIHHSEKELW--ARSGDMELGGLCDGLQNLRRDIGDSRLTPRTQKLLMINDRQEAQ 191 L N+ +++RWLTA+ DPLA IYTFSSC+ LSDL GDGDF+LV+ADLGSG +NMKLRV+KGTQ ++ENTIIDLPTGVV FHMD N+P+IPAIAVASGSHIYIYKN+RPYFKFTLPTL+I +E+++W A + + + L NLR +IGD+RLT RTQ+LLM++ QE + Sbjct: 5 LDNLLAGPDSERWLTAHNDPLAGIYTFSSCLALSDLGGDGDFRLVIADLGSGEFNMKLRVFKGTQ------------QVTENTIIDLPTGVVTFHMDTNEPRIPAIAVASGSHIYIYKNLRPYFKFTLPTLDIQPAERDIWDQAARDTLNTSQIYENLSNLRNEIGDARLTARTQRLLMLDSLQEVE 179
BLAST of bardet-biedl syndrome 1 isoform x1 vs. nr
Match: gi|1325331880|ref|XP_023347798.1| (Bardet-Biedl syndrome 1 protein homolog isoform X1 [Eurytemora affinis]) HSP 1 Score: 239.195 bits (609), Expect = 1.968e-71 Identity = 113/187 (60.43%), Postives = 142/187 (75.94%), Query Frame = 0 Query: 7 LANMAMTANADRWLTAYEDPLASIYTFSSCITLSDLTGDGDFKLVVADLGSGTYNMKLRVYKGTQLVSIIQLKSAGISISENTIIDLPTGVVAFHMDQNDPKIPAIAVASGSHIYIYKNMRPYFKFTLPTLEIHHSEKELW--ARSGDMELGGLCDGLQNLRRDIGDSRLTPRTQKLLMINDRQEAQ 191 L N+ +++RWLTA+ DPLA IYTFSSC+ LSDL GDGDF+LV+ADLGSG +NMKLRV+KGTQ ++ENTIIDLPTGVV FHMD N+P+IPAIAVASGSHIYIYKN+RPYFKFTLPTL+I +E+++W A + + + L NLR +IGD+RLT RTQ+LLM++ QE + Sbjct: 5 LDNLLAGPDSERWLTAHNDPLAGIYTFSSCLALSDLGGDGDFRLVIADLGSGEFNMKLRVFKGTQ------------QVTENTIIDLPTGVVTFHMDTNEPRIPAIAVASGSHIYIYKNLRPYFKFTLPTLDIQPAERDIWDQAARDTLNTSQIYENLSNLRNEIGDARLTARTQRLLMLDSLQEVE 179
BLAST of bardet-biedl syndrome 1 isoform x1 vs. nr
Match: gi|1316206005|ref|XP_023213403.1| (Bardet-Biedl syndrome 1 protein-like, partial [Centruroides sculpturatus]) HSP 1 Score: 210.69 bits (535), Expect = 5.861e-63 Identity = 100/188 (53.19%), Postives = 139/188 (73.94%), Query Frame = 0 Query: 15 NADRWLTAYEDPLASIYTFSSCITLSDLTGDGDFKLVVADLGSGTYNMKLRVYKGTQLVSIIQLKSAGISISENTIIDLPTGVVAFHMDQNDPKIPAIAVASGSHIYIYKNMRPYFKFTLPTLEIHHSEKELWARSGD--MELGGLCDGLQNLRRDIGDSRLTPRTQKLLMINDRQEAQGTPSDAAQF 200 N +WL A+ DPLA++YTFSSC+ L DL GDGD+KL++ADLG+G+YNMKL+VYKGT L +SE+TIID+PTGVVAFHM+ D K PAIAVASG++IY+YKNMRP++KFTLPTLE+ +E ++W ++ D ++L L + L+++R +IG+S LT R+Q+ LM+ D+ E + QF Sbjct: 7 NISKWLNAHYDPLATLYTFSSCMCLVDLQGDGDYKLIIADLGTGSYNMKLKVYKGTNL------------LSEHTIIDIPTGVVAFHMNTGDTKAPAIAVASGANIYVYKNMRPFYKFTLPTLEVSQAELDVWNQAKDDKLDLTNLKEVLESIRTEIGESNLTARSQRFLML-DQDEMEEFAHLHKQF 181
BLAST of bardet-biedl syndrome 1 isoform x1 vs. nr
Match: gi|1009573139|ref|XP_015918519.1| (Bardet-Biedl syndrome 1 protein [Parasteatoda tepidariorum]) HSP 1 Score: 206.838 bits (525), Expect = 4.541e-60 Identity = 97/171 (56.73%), Postives = 132/171 (77.19%), Query Frame = 0 Query: 15 NADRWLTAYEDPLASIYTFSSCITLSDLTGDGDFKLVVADLGSGTYNMKLRVYKGTQLVSIIQLKSAGISISENTIIDLPTGVVAFHMDQNDPKIPAIAVASGSHIYIYKNMRPYFKFTLPTLEIHHSEKELW--ARSGDMELGGLCDGLQNLRRDIGDSRLTPRTQKLLM 183 ++ +WL A+ DPLA++YTFSSC+ L+DL GDGD+KL+VADLG+GT+NMKL+VYKGT L +SE+TIIDLPTGVV+FHMD DP+ PAIAVASG+HIYIYKNMRP++KFTLP + SE E W A++ ++++ L + L+N+R ++G+S LT R+Q+ LM Sbjct: 11 HSSKWLHAHYDPLATLYTFSSCMCLADLHGDGDYKLIVADLGTGTHNMKLKVYKGTHL------------LSEHTIIDLPTGVVSFHMDTCDPRSPAIAVASGAHIYIYKNMRPFYKFTLPASSVCPSEMEAWSQAKNEEIDVNTLREFLENIRAEVGESFLTARSQRFLM 169
BLAST of bardet-biedl syndrome 1 isoform x1 vs. nr
Match: gi|1067068737|ref|XP_018027816.1| (PREDICTED: Bardet-Biedl syndrome 1 protein-like [Hyalella azteca]) HSP 1 Score: 206.838 bits (525), Expect = 5.353e-60 Identity = 97/184 (52.72%), Postives = 136/184 (73.91%), Query Frame = 0 Query: 10 MAMTANADRWLTAYEDPLASIYTFSSCITLSDLTGDGDFKLVVADLGSGTYNMKLRVYKGTQLVSIIQLKSAGISISENTIIDLPTGVVAFHMDQNDPKIPAIAVASGSHIYIYKNMRPYFKFTLPTLEIHHSEKELWARSGD--MELGGLCDGLQNLRRDIGDSRLTPRTQKLLMINDRQEAQ 191 +A ++D+WLTA+ DP+A + TFSSC+ L+DL+ DG+ KL++ADLGSGT+NMKL+VYKGTQL S ENT+ID+PTGV+ FHMD +P++PA+AVASGS+IYIYKN+RPYFKFTLPTLE++ E + W ++ D +++ L + L +LR ++G+ LT R+Q+ LM D Q Q Sbjct: 17 VATGQDSDKWLTAHNDPVAGLNTFSSCMALADLSADGEIKLIIADLGSGTHNMKLKVYKGTQLSS------------ENTLIDMPTGVITFHMDTTEPQLPAVAVASGSYIYIYKNLRPYFKFTLPTLEVNPLEYDAWNQARDDLLDVSLLYEILDSLRHEVGECGLTTRSQRFLMCPDHQSQQ 188
BLAST of bardet-biedl syndrome 1 isoform x1 vs. nr
Match: gi|675367258|gb|KFM60160.1| (Bardet-Biedl syndrome 1 protein, partial [Stegodyphus mimosarum]) HSP 1 Score: 187.578 bits (475), Expect = 1.454e-57 Identity = 89/153 (58.17%), Postives = 118/153 (77.12%), Query Frame = 0 Query: 16 ADRWLTAYEDPLASIYTFSSCITLSDLTGDGDFKLVVADLGSGTYNMKLRVYKGTQLVSIIQLKSAGISISENTIIDLPTGVVAFHMDQNDPKIPAIAVASGSHIYIYKNMRPYFKFTLPTLEIHHSEKELW--ARSGDMELGGLCDGLQNLR 166 + +WL A+ DPLA++YTFSSC+ L+DL GDGD+KL+VADLG+GT+NMKL+VYKGT L +SE+TIIDLPTGVV+FHMD DP+ PAIAVASG+HIYIYKNMRP++KFTLP + SE E W A++ ++++ L + L+N+R Sbjct: 10 SSKWLHAHYDPLATLYTFSSCMCLADLHGDGDYKLIVADLGTGTHNMKLKVYKGTHL------------LSEHTIIDLPTGVVSFHMDTCDPRSPAIAVASGAHIYIYKNMRPFYKFTLPASSVCSSEMEAWNQAKNEEIDINTLKELLENIR 150
BLAST of bardet-biedl syndrome 1 isoform x1 vs. nr
Match: gi|780031621|ref|XP_011666764.1| (PREDICTED: Bardet-Biedl syndrome 1 protein [Strongylocentrotus purpuratus]) HSP 1 Score: 200.29 bits (508), Expect = 1.935e-57 Identity = 96/193 (49.74%), Postives = 138/193 (71.50%), Query Frame = 0 Query: 1 MSNVHALANMAMTANADRWLTAYEDPLASIYTFSSCITLSDLTGDGDFKLVVADLGSGTYNMKLRVYKGTQLVSIIQLKSAGISISENTIIDLPTGVVAFHMDQNDPKIPAIAVASGSHIYIYKNMRPYFKFTLPTLEIHHSEKELW--ARSGDMELGGLCDGLQNLRRDIGDSRLTPRTQKLLMINDRQEAQ 191 +SNV + M+ N +WL A+ DP+AS+YTFSSC+ SD++GDG+ KLV+ADLG+GT++MKL+VYKGT L ISEN IIDLPTGV F+MD N+P++PAI VASG ++Y+YKN+RPYFKFTLP L+++ E++LW AR +++ L + L ++RR+ + LT R+ K LM+ DR++ + Sbjct: 10 LSNVDKSSIMSHEGNT-KWLNAHNDPVASLYTFSSCMAFSDISGDGEAKLVIADLGTGTFDMKLKVYKGTTL------------ISENAIIDLPTGVCTFYMDNNEPRVPAIGVASGPYLYVYKNLRPYFKFTLPPLDVNPVEQDLWNQAREDKIDVTVLREMLDSIRREGNEGALTVRSLKFLMLQDREQME 189
BLAST of bardet-biedl syndrome 1 isoform x1 vs. nr
Match: gi|957834711|ref|XP_014667462.1| (PREDICTED: Bardet-Biedl syndrome 1 protein-like [Priapulus caudatus]) HSP 1 Score: 195.667 bits (496), Expect = 7.720e-56 Identity = 95/185 (51.35%), Postives = 130/185 (70.27%), Query Frame = 0 Query: 18 RWLTAYEDPLASIYTFSSCITLSDLTGDGDFKLVVADLGSGTYNMKLRVYKGTQLVSIIQLKSAGISISENTIIDLPTGVVAFHMDQNDPKIPAIAVASGSHIYIYKNMRPYFKFTLPTLEIHHSEKELW--ARSGDMELGGLCDGLQNLRRDIGDSRLTPRTQKLLMINDRQEAQGTPSDAAQF 200 +WL A+ DPLA++Y+F+ C+TL+DL GDG+ KLV+ADLG+G YNMKL+VYKGT L +SENTIIDLPTGVV F MD ++P+ PAIAVASGS+IYIYKN+RPYFKFTLP L ++ +EK++W R +++ + + L +R ++ +S LT RTQ+ LM+ P D +F Sbjct: 19 KWLDAHSDPLAALYSFTQCMTLADLHGDGEHKLVIADLGTGAYNMKLKVYKGTSL------------MSENTIIDLPTGVVTFLMDTDEPRTPAIAVASGSYIYIYKNIRPYFKFTLPPLPVNATEKDIWDQVREDKIDIKTVKELLDGIRSEVTESGLTTRTQRFLML--------APGDVEEF 183
BLAST of bardet-biedl syndrome 1 isoform x1 vs. nr
Match: gi|291224566|ref|XP_002732274.1| (PREDICTED: Bardet-Biedl syndrome 1 protein-like [Saccoglossus kowalevskii]) HSP 1 Score: 192.971 bits (489), Expect = 1.092e-54 Identity = 94/176 (53.41%), Postives = 129/176 (73.30%), Query Frame = 0 Query: 18 RWLTAYEDPLASIYTFSSCITLSDLTGDGDFKLVVADLGSGTYNMKLRVYKGTQLVSIIQLKSAGISISENTIIDLPTGVVAFHMDQNDPKIPAIAVASGSHIYIYKNMRPYFKFTLPTLEIHHSEKELW--ARSGDMELGGLCDGLQNLRRDIGDSRLTPRTQKLLMIN-DRQEA 190 +WL A+ DP+AS+YTF++C+ LSDL GDG+ KL++ADLG+G+Y+MKL+VYKGT L +SEN IIDLPTGV F MD N+P+ PAIAVASG +IY+YKN+RPYFKFTLP LE++ E++LW R +++ L + L +LRR+ DS LT R+ + LM++ D+ EA Sbjct: 20 KWLNAHYDPVASLYTFTTCMALSDLNGDGENKLIIADLGTGSYDMKLKVYKGTSL------------MSENAIIDLPTGVSTFFMDTNEPRTPAIAVASGPYIYVYKNLRPYFKFTLPPLEVNEVEEQLWNQTREDKIDVRVLREMLDSLRRENTDSSLTVRSLRFLMLDPDQMEA 183 The following BLAST results are available for this feature:
BLAST of bardet-biedl syndrome 1 isoform x1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 0
BLAST of bardet-biedl syndrome 1 isoform x1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 3
BLAST of bardet-biedl syndrome 1 isoform x1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold34_size539781:311609..314718+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold34_size539781-snap-gene-3.18 ID=maker-scaffold34_size539781-snap-gene-3.18|Name=bardet-biedl syndrome 1 isoform x1|organism=Tigriopus kingsejongensis|type=gene|length=3110bp|location=Sequence derived from alignment at scaffold34_size539781:311609..314718+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'bardet-biedl syndrome 1 isoform x1' has the following synonyms
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