triple functional domain, maker-scaffold356_size197960-snap-gene-0.34 (gene) Tigriopus kingsejongensis

Overview
Nametriple functional domain
Unique Namemaker-scaffold356_size197960-snap-gene-0.34
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of triple functional domain vs. L. salmonis genes
Match: EMLSAG00000010458 (supercontig:LSalAtl2s:LSalAtl2s693:62511:68012:-1 gene:EMLSAG00000010458 transcript:EMLSAT00000010458 description:"maker-LSalAtl2s693-snap-gene-1.28")

HSP 1 Score: 67.0106 bits (162), Expect = 3.249e-14
Identity = 49/149 (32.89%), Postives = 74/149 (49.66%), Query Frame = 0
Query:    1 LLLKRGTVECFKRKS-NLKKPKVKPCHFFVFQETIIICENS---QPVHDPTSPQSLDFVASFKMNKVIVREFNKGDSSFGFELERQM----------ERCSKSRE--SAREDSSIVVQCDTEEQRDEWLKIINDQIRELKDMARKLENP 133
            LLLKRG VEC ++     K  K K CH F+FQE+I+IC +    + V+  T P+ L +   + MNK+I+ E    D +  FEL+  +          E+   + E  +   D  I+ +C+ EE R+ W +  N     L + A  L NP
Sbjct:  294 LLLKRGVVECAEKTPIGQKNWKYKKCHIFLFQESIVICTDEDKYKEVNVNTIPE-LKYWHHYPMNKLIIAEI--SDENNTFELKNDLTDLRNEDDDNEKYDDTDEVDNKENDHCIIFKCEDEESRNSWYREFNLHKSYLSNFADALSNP 439          
BLAST of triple functional domain vs. L. salmonis genes
Match: EMLSAG00000002417 (supercontig:LSalAtl2s:LSalAtl2s145:455239:514648:-1 gene:EMLSAG00000002417 transcript:EMLSAT00000002417 description:"augustus_masked-LSalAtl2s145-processed-gene-5.0")

HSP 1 Score: 52.7582 bits (125), Expect = 3.128e-9
Identity = 42/142 (29.58%), Postives = 64/142 (45.07%), Query Frame = 0
Query:    2 LLKRGTVECFKRKSNLKKP-------KVKPCHFFVFQETIIICENSQPVHDPTSPQSLDFVASFKMNKVIVREFNKGDSSFGFELERQMERCSKSRESAREDSSIVVQCDTEEQRDEWLKIINDQIRELKDMARKLENPQFY 136
            LL RG + C    S    P       K+KP   F+F++ +I  E        TSP  + +VA F +NK+ + E         F +        +S + AR+  +I+ Q D  E RD+W+ II  Q++   D  R L+ P  Y
Sbjct: 2201 LLYRGPLSCLDNFSGGPIPNGGGSTAKMKPFTVFLFEQIMIFSETVGKKTQFTSPVYV-YVAHFLVNKMSLEENVDDGHPCKFMI--------RSTDPARDALNIMCQTDEPESRDKWISIIKKQLQTQMDFLRALQAPIAY 2333          
The following BLAST results are available for this feature:
BLAST of triple functional domain vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAG000000104583.249e-1432.89supercontig:LSalAtl2s:LSalAtl2s693:62511:68012:-1 ... [more]
EMLSAG000000024173.128e-929.58supercontig:LSalAtl2s:LSalAtl2s145:455239:514648:-... [more]
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BLAST of triple functional domain vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of triple functional domain vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold356_size197960supercontigscaffold356_size197960:131770..132374 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold356_size197960-snap-gene-0.34-mRNA-1maker-scaffold356_size197960-snap-gene-0.34-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold356_size197960:131770..132374-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold356_size197960-snap-gene-0.34 ID=maker-scaffold356_size197960-snap-gene-0.34|Name=triple functional domain|organism=Tigriopus kingsejongensis|type=gene|length=605bp|location=Sequence derived from alignment at scaffold356_size197960:131770..132374- (Tigriopus kingsejongensis)
GGTGATGTGACGTCGCAAGGTTTGTTACTAAAACGTGGAACAGTGGAATG CTTCAAACGTAAGAGTAATCTCAAGAAGCCCAAGGTCAAACCTTGCCACT TCTTCGTTTTCCAAGAGACAATCATCATTTGTGAGAACTCTCAACCCGTC CATGATCCAACTTCGCCCCAGAGTTTGGACTTTGTGGCCAGTTTCAAGGT ACGGAAATGGGCCCCATCTTTACTTGGCTCCATTCATATAGAAGACTGTC GTATATTTCAGATGAACAAGGTGATTGTGAGGGAGTTCAATAAAGGCGAT TCGAGTTTCGGGTTTGAATTGGAGCGACAAATGGAGCGATGCTCCAAGAG CAGAGAATCTGCCCGCGAAGATTCATCCATCGTGGTCCAATGCGATACCG AAGAGCAGAGGGATGAGTGGCTCAAGATCATCAACGACCAAATCCGAGAG CTCAAAGATATGGCCCGAAAGCTGGAGAACCCCCAGTTCTATGACTAAGT TCCCTCCTAAACCTCATTCCTCCTCTTCCATGATGTCCAAAGTCAGCTCC TCCCGAAGCATCCGCACTTGAAAGCCACCATGGTAGAACAAGAAGTCACT CTCCA
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Synonyms
The feature 'triple functional domain' has the following synonyms
Synonym
Tk00536
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