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Associated RNAi Experiments
Homology
BLAST of wd repeat-containing protein 78 vs. L. salmonis genes
Match: EMLSAG00000010990 (supercontig:LSalAtl2s:LSalAtl2s73:435553:440882:-1 gene:EMLSAG00000010990 transcript:EMLSAT00000010990 description:"maker-LSalAtl2s73-augustus-gene-4.40") HSP 1 Score: 77.7962 bits (190), Expect = 1.053e-16 Identity = 58/211 (27.49%), Postives = 108/211 (51.18%), Query Frame = 0
Query: 31 GNNVTPLPLYVPKEEPAAHDDGSKVSKVPRPNTVLRTFLHVTTALYSMAGLGSLQQSR-LYREEINKGPTVDDL--MSSTPGHEVVGRVGDPNDIFDEGPSSLDVDEAQSSELPEKHKAERSKTLEIVLEETDTIWMLNIPGTCAEIDPNAPNESIGASNEEHDQEDPPLVVYKYQSVDRWSQTLDFSKKRKGTQSDDINLDGKETQTSAA 238
G ++TP+PL++P + D + P +++ ++VT +Y+++GLG+L + + + +E N+ D+ + T E + DP + +GP S + E++ + + + I L+ET TIW+L GTC +D ++ N+ I DQ D + +RW QT+DF +K+K TQ+D+I + G +QT+ +
Sbjct: 66 GRDLTPIPLFIP--DRIEGDQSIRTGSNP----IIKALINVTNTIYALSGLGALSRGKPVTLDEDNQEDIEDEENDIQKTIDEEEKMNMRDPK-LRQKGPISSKMSGN------EENLSSSTDSFSIYLKETSTIWILAFAGTCIPLDTSS-NKEINEKVLNKDQRD---------ACERWCQTIDFPRKKKETQTDNILMKGSWSQTNVS 253
BLAST of wd repeat-containing protein 78 vs. L. salmonis genes
Match: EMLSAG00000008270 (supercontig:LSalAtl2s:LSalAtl2s4:1304083:1353771:-1 gene:EMLSAG00000008270 transcript:EMLSAT00000008270 description:"maker-LSalAtl2s4-augustus-gene-13.10") HSP 1 Score: 50.8322 bits (120), Expect = 2.866e-7 Identity = 24/77 (31.17%), Postives = 38/77 (49.35%), Query Frame = 0
Query: 234 QTSAAIRTCLWNHKDGFCKLKYSSTAHALVKFECPNQREKIDVRGNYDENECAILVHNATVADSGIWGCYITE-YIG 309
QT C W H + FC + +S + + C + K GNY NEC + +H A ++D G+W C + + Y+G
Sbjct: 153 QTDHPWEYCRWTHHNSFCDFERTSKT-KIDQRSCDFPQNKASFWGNYSNNECGLQLHQADISDRGLWXCEMEKXYLG 228
BLAST of wd repeat-containing protein 78 vs. nr
Match: gi|1325273794|ref|XP_023321545.1| (uncharacterized protein LOC111696231 [Eurytemora affinis]) HSP 1 Score: 77.0258 bits (188), Expect = 7.150e-13 Identity = 63/221 (28.51%), Postives = 95/221 (42.99%), Query Frame = 0
Query: 22 PIVEFFDPEGNNVTPLPLYVPKEEPAAHDDGS--KVSKVPRPNTVLRTFLHV-TTALYSMAGLGSLQQSRLYREEINKGPTVDDLMSSTPGHEVVGRVGDPNDIFDEGPSSLDVDEAQSSELPEKHKAERSKTLEIVLEETDTIWMLNIPGTCAEIDPNAPNESIGASNEEHDQEDPPLVVYKYQSVD---RWSQTLDFSKKRKGTQSDDINLDGKETQTS 236
PI+ + D EGN++TP PLY P+E+ VS P+ ++ TFL + T+ +Y MAGLGS Q S Y+ + + ++ + D D+ D+G + L E+ T W ++I GTC + EE ++ P K S+D RW+QTLD +KRK TQS+ I + Q S
Sbjct: 12 PIIRYNDEEGNDITPQPLYTPQEDLKIKKKKKVVAVSTPGEPSPIMATFLKMATSTVYKMAGLGSFQGSHTYKSVMGEFEEEEEKDEEDGEMNLDEATEDLGDMQDKG--------------------------SVSLTESPTFWQISIAGTCVAL----------PKTEEVSEKIP-----KSLSLDLTERWTQTLDLPRKRKETQSEQIVMKDSSGQAS 191
The following BLAST results are available for this feature:
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold389_size186684 | supercontig | scaffold389_size186684:98488..107187 + |
Analyses
This gene is derived from or has results from the following analyses
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold389_size186684:98488..107187+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >maker-scaffold389_size186684-snap-gene-0.21 ID=maker-scaffold389_size186684-snap-gene-0.21|Name=wd repeat-containing protein 78|organism=Tigriopus kingsejongensis|type=gene|length=8700bp|location=Sequence derived from alignment at scaffold389_size186684:98488..107187+ (Tigriopus kingsejongensis)
AAAATGACTGAAGATTTTGCCGCCGGCTTCACCCATAAAATCATCCCAGA
TGAAGATGGAGGCGAGCCCATTGTGGAGTTCTTCGACCCGGAAGGAAATA
ATGTCACTCCACTTCCGCTATACGTGCCCAAAGAGGAACCTGCGGTAAAT
TTATTTTCTTTGAAGTGACCTCCCGCTTTCGATTGTTATTGCTTAGCACA
AAATAATCAAATATAACATAAATGTATGGTTTGCCATGAACAGAGCTCTC
AGTCTACAAAAGTTGTGATTTTGCGTACCTCAGATTTAGCCCAAAAACGA
AACTGTCCACTTTTGGGTACCTTATCAATCATGCACTCAAAAGCATCAGC
GTTAAAACTATAACGCGCGGAATTGATATACCATTTTCTTCTTGCGAGAC
TCCGAAGTGGTCTTTAAGTGGTTTAAATGTGGTCTAATTTTGCTAACCTG
CAACTTTGAACAACCCTTGTAATTGATTATAAAGCTCAGATTATTTGATA
GTTTTAAAAGTGTAAGATTATTTGGTACTCTTTGAAGACTAGTGACAATT
GTACGTAGATTTCCGAGATTTTATGGGATAGTTCCAAACGCTCTCGCTCA
CGATCGTGAGAAGGTATGTTCTGCTGTGTGATTCTACTGGCGTCAATTCG
AAACAATTTTGACGCCGTGATCAGTGCTCCGTTGAGTTCCTCTGAAGATT
ATTTTAGCCTCAACTTTACGGTATGTTATTGTATTCAAATATTACGTTCA
AATTCTTATGGCCTATATTCTAGTGGCCTTCCAGCGACCCCTGATCAGGC
AATTGGGCGGGAAATTAGCCCATCGAGCACCTAACCTGGCTTGCTTAGAG
TTTGCTTGGAAACAAACCTTTGAAAGATGTACCTTTATCAAATTGGAAGC
CTCTAGTTATCAGTACATAACTTATGTACTGAAAAGCCAGCCCTCCGGAA
TCGAAAGCGGGCGATTTGGAAATACTCCTTCCTGCTATGACACTGAGTTG
GTCTCAAAAACTGTCCAATAAGTGGCTATCCAACGCCAATAGGTGATAGA
TTGACACTGACAAGCCTGGTGAAGTTAGCTACATAGCAGTACATAACTCA
GTCTCGTTTGCATCCCGGCGATCGTGGTCCAGTGTGACCACTGTTGTTCT
TTAGGGGTAGGAATTTGCCCGATTAGTATACGTATAGTGCGAAGTTTGAA
TGACCTCTTCGATATCCAATCACGGTTATTTGAGTGCCGGCCCACCTAGC
CATCAACGCTAGTAGTCGGCCAAACTCTCNNNNNNNNNNNNNNNNNNNNN
NTTTGGAAATACTCCTTCCTGCTATGACACTGAGTTGGTCTCAAAAACTG
TCCAATAAGTGGCTATCCAACGCCAATAGGTGATAGATTGACACTGACAA
GCCTGGTGAAGTTAGCTACATAGCAGTACATAACTCAGTCTCGTTTGCAT
CCCGGCGATCGTGGTCCAGTGTGACCACTGTTGTTCTTTAGGGGTAGGAA
TTTGCCCGATTAGTATACGTATAGTGCGAAGTTTGAATGACCTCTTCGAT
ATCCAATCACGGTTATTTGAGTGCACCCGCCTCAGAGATCAATGGTTATT
TAATTTGCCAATGAAAAACTGTTAACATGCATCCCAATGGTGGGGGGTTC
TCTGATGTGAAGGCTTTCATCCCCAAGATGAGTGTTTTATGAATCATTGC
CTTGGTAGTGTTTATCTTATTTAACACCCAAAACTTGCACTAGTCGCCTC
CTCGATCATTTTTTCATGTACTGTATGTATGTGCGTTAACAACAAATGGC
ACATTTTGGGGGTTTCGTCCAATTCCACATGTGAAGGAATATTCTAATTT
GTTTCGTTTTTTTATTACATTTATCTGATATCTTGTGCTATAGCTGTATA
ACAGCGATCAAATGAACTTACTCAGGGATGGTGGAGCTTTCGTGGCATGA
AGATAGACAAATAAAACTCTTCTCAGGGAGAAGTCGCTCTTTTCAGCTGA
ATAGCTGCCGAGTTCATTTCTGGCGCTTTTTTCAACAACTATATTCCGGT
TTCTCTCGGCATGTCCTCAGGGTGACCAAATGTCACTTTAGTCAGCCTCT
CTTCGATCAGCGTGATGTAGGGCACTCATTCGATGGACTTTCTGATTATA
GGCACATGACGATGGGAGCAAAGTCAGCAAGGTTCCAAGGCCAAATACGG
TGTTGAGGACCTTCCTCCATGTGACAACCGCCTTGTACAGCATGGCCGGA
TTGGGATCGCTCCAGCAATCGAGGTTATACAGGGAGGAGATCAACAAGGG
GCCCACCGTGGATGATCTTATGTCCTCCACTCCGGGTCATGAGGTGGTTG
GTAGGGTGGGCGATCCCAATGACATCTTTGACGAGGGCCCTTCCAGCCTG
GACGTGGATGAGGCTCAATCCAGTGAGCTCCCGGAAAAGCACAAAGCCGA
GAGATCCAAGACCTTGGAGATAGTCTTGGAAGAGACCGACACCATTTGGA
TGTTGAACATCCCTGGCACTTGTGCCGAGATTGATCCAAATGCTCCCAAT
GAGAGTATTGGTGCCTCCAATGAAGAGCATGACCAAGAGGATCCTCCTCT
GGTAGTGTACAAGTACCAATCCGTGGATCGTTGGAGCCAAACCTTGGACT
TTTCCAAGAAACGAAAGGGAACTCAAAGTGACGATATCAACTTGGATGGA
AAAGAGACTCAAGTAAGCACCAAAGACTTCCTAGAGGAGGAAAGACGAAC
GGAGCGATTGAGCCATCCGAGGAATAACTCCCAAAGTCGATCTCCGTCCA
GGGACAGGACAATCTCGCCCCGACGCTGAGAAAAAGTATGGATTACTCGA
CATGCCGATGCATTCTATTCACCACAAAGCATTTGGATCTGCAATATGGT
GCAATATGACCGAATGAACGTTCTTTTAAGCGCTAATTTTCTATCGAGAG
CCAAATAGGCAGACTTCTTGTTAGTTAACGTAGAGAAACAAATTATTAGG
CCCACAGCGAGACGACACTAATCTATTATTGAGAATCGTGAATTTAAACT
GTGGGATGAAAATCTACCCTCGCCTAAGCGAAAAGGTCGCCCAAATTGAT
GCAACCATAGAGTGCTTTAGGATGGAGGCCGCTGATCGGGCATTTTGTTC
TTTCTCATCTCAGCCAATAGAGTTCATGTCAAGTTCAAACACAAATCAAT
GAGAGCCTTTTCCAACTTTTCCAAAGTTTGAGGCCAATTGCTTGGCTCAG
TTTTGAAAAATAGCAATTCACAAGTTACTGCATTGTCTAGTGCGTTCACC
AATTTTTGCCCTCCGGGTGGATAACAGCATAACTTAAAAAGATGAGATCG
GCCACGGCTCGTGGACAGAACACTTAAATAAAACATGACTTAAAACCCAC
CCATCAAAGTAAGTTTTTGTTTAGTTTAATTGAAAATGATAAATAGCCGT
AGAGGCAATCAGCTGATGGTCTGAGCTTCCCCACATTCAGGCAATCCATG
GTACAATACATCGCCGTTAGATGGGGTTGAAAGGATTTCGCTACAACTAG
GTGAGGTTGATATTTCTACACTAATTTTGGGATTCTCACTAATTGATGGA
TGTCGTAGCTGTGTTATAATAGGCTGATCAGACACTCTAAGTTAAAGGGA
TCACGTGTAATCACGTCTTCTTCGACGGAAGCTTGAGCTTCTGGGATGGA
GGAAAGACGAATTTCTGGGAATTCCTGTGAATATCTTCAAAGGAAATTGT
AAACCCAGAGAGTCTTCGTTCGGATGCTCTCATATCTTTGAACCTGGTGG
TCGGGTCGTTGTTATCACTATTTCGATGGTAATGAACTTTGAAGGTCATA
TGAAGTACGATAAATATGCTATTTGAGGGTGAGCCCAATTCTTTACGGCC
TGCAAATCGTTTATAATCACAAAAAATGTATCGTAAAAGTCTGTTGAAAA
TCAGCATGTCTCAATGCACCTTAAGATGTTCTAAAAGTTGGCTTGTTTCG
ACGCTTAAAACCCGCAAATTAAGGTGTTAAGAAAGCTCACAAAGTTATGA
ATGCCAGTGTGGATCCAAACTCCGAAGAAATATAGTTTGGGATCTAATCT
TTCTAGAACTAAGCCCCATAGACTCGGATCACAATTCCTCTGTGCATTTT
TTTAAACTTTTCCCCTGATAAGTCATGTCACGGTCCATTTTGGTTTCTAA
GGAAGTGGAGATACCTCAAGGCACAAAGGATGAATCACATCGAGATTGAA
TTTCTTACGGGAGAGAATCTCAGGAGGGAAGGACGTCATGAGTTTCACTA
AGAGAGTGTGTGTTCTATTTTTTATGCATCACTGTGTATTACCTTCTCAA
AGTTTTCGACTATTGAATCGAGGCATCGATACTACAGAATTCAACTCTAC
TGGAGGACAATCAAGTTCAATCACAGTAACGGAAGGCGAATCCTTTAAGC
TCCATTGTCAGGTAACTAACTAACAGTGCTGTAATTTTTCTTTTTATTCT
TGCTCAGAATGTTAAAGATGGGTACTTTTTTTTATTTAACGAAGTTTACA
AGTTAGTTAGAACCAGTGTGTCTCATGTGTTGTTTTCGCATTAACCTAGA
CAAGTCAAGATCCTTGGCTTATTTTTGCAGTTCTTTGGTTTGAAAACTTC
GATTCATCAACCCTAGAAGCATGGAAAAATAGGCAAATCAGGGATTAAAT
CCTTCATCACGATCCCCTGATATTTATTAATTCTGTATTCTTTGGTATTT
TTAGAGACATTTTGATCGCCATACTATTGATACGTAAACCATGATTGTGT
GTCAAGTCCCTGGATCCCCAGGTAATAGGTGAACACCTTCAGCACCTTTA
ATGAACAACTTGGGTCCAAGGTTGCATGAATAACTTGGGCTCCATCATGT
TGTTTGATTAATGTATTTAGAGTATGTTTTTTTAAATACTCAATTCCGGC
TGTATTGCCTGTGTGTAACCATCGCAAACCGTATTTGATTGCTGGTGCTA
GCCGCATAAGACTTAAAACGTCTTTGTATATCCCGTTGTGTTCTGATCTA
CCCTTTTATATCTTTGCTCTGAGTAGGCCTGTTGAGGAAAAATAACTAGC
ACAAGTCACTTGGCCAAAAGGAGCGACAACACGGCTGCTGATCAAAATAC
AAAAACAGTGTGCCTTGGCCTGCCCAATTTCTCAGTCGCGCCGCGCCAGC
CCTCATAAGACCAAGCCCACGACCACGCCAAGCCGCACCGTTTTTTTGTA
TTTAGATCAGCTGCTTGGTTGTCGCTTCTCCCCTTCAGCCACTTTCCTAG
GAACGCTCATTCCAGATATAGAACCTCCTTGAGTAGGCCACTGAGTACTA
TGTTTAACAATGAGTGTGTGTGTGTAATCGATTTATTTGACAATATAATG
TGGAATATACATGTCAATTTGCCCTAGTCCAACACTTAGCAAAGCTTGCT
AGTCGATCGCATTGGGGCGGATATAAACGAGAAGAGGAAAAAAAACAGTC
ACAAGAGATTTAACCTATACTAATATCACAGAAAATGCATAGACGATTTG
GAATCTTAGATCGGTGCAGACCTAGCAATAGCGCTGGCCACCTTCGGCGC
CAATCCCTCCGTTTTGGCATTACGAAGGGAGGGGTATGTGTTCCACATAA
CAATGCCATGGTGGACCAGGCTGTTGGCTGCGAAGTGGAGACGACTTGCA
ACAACACCGGCTGCCCCTGATCTTGTCGATTTTACTGGGGCATTGGTACA
GAAAAGGGCGTTTCCGAGCGCATTCCGAGAGCCACTCGGGCCGTCACAGC
TATGGTAGGCTTTCCACGTCTCCATGGCCACCGCGCGAACGGACATCTCG
TTCAGGCCTGGGAGTCCAGCCTGACGGAGAAGGGAAGCGATTGGGATGTG
ATCCGTCCTCTTCTTTCCGATGACAGACCTGGCAACGTCGTTGATGGCGA
CCTGCACCACCCTGTAGTCGTCTCTAGTTAATCTCACGGCTCCTTTCTGT
AATTTTACCACATTATTAATTCTAGAACTACTACCATAAAACTCTAAGCC
ATATTCTAAGACACTTTTGATTAAGCCATTATGAAGAAGAATTTTTATGC
ATTTGGGTATAATATCTGACATTCTAAGCAAGCTGAAAATCGTTTTTTCA
GCTTCTTTAAAACATACTCGACGTGAGTAGACCAATTAAGTTTGTCATCA
ATGTGCAGTCCCAGAAATTGTATGCTATTGATGACTCCTTTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNACCCCCAACATCTCCAGTTCCCTCGATGGTTT
CACCTTCACACCATCCACATTGATTTGGAACTCGGCCAAGTCTCCGCGCT
TTACTTTGCCGCCGATAATGAGCTGTGTCTTGGTGGTGTTCATTACTAAG
CCGTTCCCAGCCGCAAACCGCACGAAATTGGCGGCCCGATTCTCCAGGAG
ACACTTAACAGTGGTGAGGTCTCTTCCAATAGCCCAGATGGACACGTCAT
CGGCATATCCGACCATGCTCTCTTCATTAGTCTATTTTAGTCTCGCTATT
TGGAATAGAGTGATTCCCGTGCTCGGATCTATATAAAGTGGCTTTGAAAG
TTCCGATCAATTCATGTTTTGAAAGGTTGCGTGAACGGGCTTTGTTGCAA
CGGTTGCCTCTTGATAAAGAAGCCTTAGTGGTTGACTTGACACTGACTCA
ATTTATAATCTGAATTTGACGGCTGTCTTGGATGAGAATGTGGTTTCTAA
AAAGCTTGATGGGAAGCCGAATTTTGCCGTCTGCTGATCAGGGTGACTAA
CATCTTAATGACACTGAATGGACCTTCCCTTGAAAAATTCCTCAATATAA
TAATCCAGTTTTTGCCAACCCATTCACCTGCACAAATATTATCTGGGATG
TGTGTGTATTAGAGTTTTTTTCTACGAGTACATGTATGTAAAGAGCCTGG
GATTCTCTAAGCAAACAAATGGTAGTCAGTAGTGTTAGGGTGTTTTAAAA
TATGATTTACACAAAACCTAATGGTACAATGTGCTACAGCAAATTGAAAC
CAAAATCGTCCGTACAATGTAGACGGACGTGGGCAAGAAGTACGTGGATC
ATCAAGGCTGATTTTTAATATGTTTTTATTTGATATCTATGCTTTATTTT
TCGAAATGGGCCCCGTCTGCCTCAATCATGGCCTCGCCAAGGCCCCTGAA
GGCGGGGCAGACCCTCCCGACGTAGTCCACGTCCATGGCAGCCCAGTGCT
CCTCCACAGAGGCCTTCAGGTCGCTGACACTCTTGTGAGGTGTCCTGCAG
GCCTTTGACTCCACATAGCCCCAAATCCCGTAGTCCAACGGCGAGCAGTC
CGGCGAGGACAGCCATCTTCCGCATGCTGGTCTGCGGACTGGGCTCGATC
TCGCAGACCACGCCCATCAGAAATTCGTCAATGAGCTTTTTATTGTGGCC
CCCACTCCCCTTGCTCCTTGTCAACGACTTGCCGTCCTTCCTGAGCTTCT
TGACCTTGTCCACCAGGCTCCGGGAGCACGACACGATGTCCATCACCTCC
TTGACAGTCATTCCCGCGGAGAGGAGATCGAGGACTTTTGGCCTCCATTT
TCACGAATACTGAACCCAAAGAGGCCAGAAACCCGTCTTTTGAAAGCTGA
GACTCGCACAATTCCAAATCTGAAGCTTAAAACTCGCCAGCTACTCTAGA
ACGCGAATTATAAGCGATAGAAGGTGTGCTTTCGATTTGCTTTACAACAC
TGGGTAAGCCAAAAATATTAACATAAAACGATACAAAACGAAAAGAATAA
TGTACAGAAGCACAAATTTACGGGAATAAAACTGTACAGGAACAACTTTA
CGCAAACATAACTATGTATAAAAAAACAAAACGACGGAGAAACGCATAAA
ATGTGAGAATACAAAAATATATATACCCAAAAAACTACAAAAAATGCTCT
CAAGGAAACGAAGACAAGAAGCACATCAATTTAGGTAGAAGCATGATATT
GCACCTCAATCAAAAACGTAATAAGGTATGACTTACTGTACATGTAGCTG
TTTTGATATTAATCAATTGTCGCGTTGAGGAGTGTAAAAGATATTTTTCT
AACGCTTGCCCGGATAATATATTTTTTATGGAATTGAGTTAAACAGTGCG
GATTGTTCTTTAATTGTTTCCTTCCTTTTAGACCAGCGCCGCCATTCGGA
CTTGTTTATGGAACCACAAGGACGGCTTTTGCAAGCTCAAGTACAGTTCC
ACTGCCCATGCGTTGGTCAAGTTTGAGTGTCCCAATCAACGAGAGAAGAT
CGACGTGAGAGGCAATTACGATGAAAATGAGTGCGCCATTTTGGTTCACA
ACGCAACGGTGGCGGACTCAGGAATTTGGGGCTGTTACATCACGGAATAC
ATCGGTCGGTTCAACATCTTCTCGGAACCTGAAAAGGTTTCCGCCACAAT
GAATGTTCGAGTGCTTCCCAAGAAAAATGTCGAAGGCATTTCGGCCCGAT
CGGGACTTTTCTGCCCGTGTTCTTGCGAAGACGAAACGGAGCCCAAATAA
ATATCTCCCGCAACCTCTCAATATTTCTAAAATTCGGTTTCTGAAACAGC
TGATTAAGAACTGGATCAAGGTTTGAGACGAGGCTGTTTTTAACATTGAG
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Synonyms
The feature 'wd repeat-containing protein 78' has the following synonyms
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