cytochrome c oxidase, maker-scaffold3945_size7060-snap-gene-0.0 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of cytochrome c oxidase vs. SwissProt
Match: gi|1352177|sp|P98000.1|COXN_BRADU (RecName: Full=Alternative cytochrome c oxidase subunit 1; AltName: Full=Alternative cytochrome c oxidase polypeptide I; AltName: Full=Cytochrome BB3 subunit 1; AltName: Full=Oxidase BB(3) subunit 1) HSP 1 Score: 58.9214 bits (141), Expect = 2.811e-9 Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0
Query: 26 MDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
+DA+ YL +T+HG IMV ++LTA G F N LIPL +GARDM ++NM+S
Sbjct: 76 IDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPYVNMLS 128
BLAST of cytochrome c oxidase vs. nr
Match: gi|1120378498|ref|WP_073242362.1| (cytochrome c oxidase subunit I [Maribacter aquivivus] >gi|1110178452|emb|SHJ76049.1| cytochrome c oxidase subunit 1 [Maribacter aquivivus]) HSP 1 Score: 156.377 bits (394), Expect = 3.288e-41 Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = 0
Query: 1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
MQLAWPGEAFPIFEA+LGKWAPGGVMDADVYLALVT+HGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct: 63 MQLAWPGEAFPIFEALLGKWAPGGVMDADVYLALVTMHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVS 140
BLAST of cytochrome c oxidase vs. nr
Match: gi|1168746158|ref|WP_080318142.1| (cytochrome c oxidase subunit I [Croceivirga radicis] >gi|1167658389|gb|OQD43741.1| cytochrome c oxidase subunit I [Croceivirga radicis]) HSP 1 Score: 155.992 bits (393), Expect = 3.533e-41 Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0
Query: 1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
MQLAWPGE+FPIFEAVLGKWAP GVMDAD+YLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct: 60 MQLAWPGESFPIFEAVLGKWAPDGVMDADIYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVS 137
BLAST of cytochrome c oxidase vs. nr
Match: gi|498204322|ref|WP_010518478.1| (cytochrome-c oxidase [Mesoflavibacter zeaxanthinifaciens]) HSP 1 Score: 155.992 bits (393), Expect = 3.533e-41 Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0
Query: 1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
MQLAWPGE+FPIFEAVLGKWAP GVMDAD+YLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct: 60 MQLAWPGESFPIFEAVLGKWAPDGVMDADIYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVS 137
BLAST of cytochrome c oxidase vs. nr
Match: gi|1353521478|ref|WP_105001508.1| (cytochrome c oxidase subunit I [Aureicoccus marinus] >gi|1350969683|gb|PQJ15846.1| cytochrome c oxidase subunit I [Aureicoccus marinus]) HSP 1 Score: 155.992 bits (393), Expect = 4.203e-41 Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 0
Query: 1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
MQLAWPG FPIFEAVLGKWAPGGVMDAD+YLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct: 61 MQLAWPGREFPIFEAVLGKWAPGGVMDADIYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVS 138
BLAST of cytochrome c oxidase vs. nr
Match: gi|1224965334|ref|WP_092980617.1| (cytochrome c oxidase subunit I [Robiginitalea myxolifaciens] >gi|1097248158|emb|SFR33226.1| cytochrome c oxidase subunit 1 [Robiginitalea myxolifaciens]) HSP 1 Score: 155.606 bits (392), Expect = 4.849e-41 Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0
Query: 1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
MQLAWPGE+FP+FEAVLGKWAP GVMDAD+YLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS
Sbjct: 61 MQLAWPGESFPVFEAVLGKWAPDGVMDADIYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 138
BLAST of cytochrome c oxidase vs. nr
Match: gi|1301721214|ref|WP_100893895.1| (cytochrome c oxidase subunit I [Algibacter sp. RHA_19] >gi|1294379932|gb|PKB42119.1| cytochrome c oxidase subunit 1 [Algibacter sp. RHA_19]) HSP 1 Score: 155.606 bits (392), Expect = 5.262e-41 Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0
Query: 1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
MQLAWPGE+FP+FEAVLGKWAPGGVMDADVYLALVT+HGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASG LNMIS
Sbjct: 56 MQLAWPGESFPLFEAVLGKWAPGGVMDADVYLALVTMHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGLLNMIS 133
BLAST of cytochrome c oxidase vs. nr
Match: gi|1148661570|ref|WP_077401817.1| (cytochrome c oxidase subunit I [Cellulophaga sp. W5C]) HSP 1 Score: 155.606 bits (392), Expect = 5.652e-41 Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0
Query: 1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
MQLAWPGE+FP+FEAVLGKWAPGGVMDADVYLALVT+HGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASG LNMIS
Sbjct: 56 MQLAWPGESFPLFEAVLGKWAPGGVMDADVYLALVTMHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGLLNMIS 133
BLAST of cytochrome c oxidase vs. nr
Match: gi|584430608|gb|EWH15269.1| (cytochrome c oxidase subunit I [Cellulophaga geojensis KL-A]) HSP 1 Score: 155.221 bits (391), Expect = 5.759e-41 Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0
Query: 1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
MQLAWPGE+FP+FEAVLGKWAPGGVMDADVYLALVT+HGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASG LNMIS
Sbjct: 26 MQLAWPGESFPLFEAVLGKWAPGGVMDADVYLALVTMHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGLLNMIS 103
BLAST of cytochrome c oxidase vs. nr
Match: gi|503386770|ref|WP_013621431.1| (MULTISPECIES: cytochrome-c oxidase [Cellulophaga] >gi|324322221|gb|ADY29686.1| cytochrome c oxidase subunit I [Cellulophaga lytica DSM 7489] >gi|682033564|gb|AIM60688.1| cytochrome C oxidase [Cellulophaga lytica] >gi|1130022655|gb|APU10565.1| cytochrome c oxidase subunit I [Cellulophaga lytica] >gi|1214874912|emb|SNQ44913.1| Cytochrome c oxidase, subunit I [Cellulophaga lytica]) HSP 1 Score: 155.221 bits (391), Expect = 6.325e-41 Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0
Query: 1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
MQLAWPGE+FP+FEAVLGKWAPGGVMDADVYLALVT+HGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASG LNMIS
Sbjct: 56 MQLAWPGESFPLFEAVLGKWAPGGVMDADVYLALVTMHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGLLNMIS 133
BLAST of cytochrome c oxidase vs. nr
Match: gi|738431141|ref|WP_036382475.1| (cytochrome-c oxidase [Muricauda sp. MAR_2010_75]) HSP 1 Score: 154.836 bits (390), Expect = 9.137e-41 Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 0
Query: 1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
MQLAWPGE+FPIFEA+LGKWAP GVMDAD+YLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct: 58 MQLAWPGESFPIFEALLGKWAPDGVMDADIYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVS 135 The following BLAST results are available for this feature:
BLAST of cytochrome c oxidase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 0
BLAST of cytochrome c oxidase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 1
BLAST of cytochrome c oxidase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold3945_size7060:214..1131- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold3945_size7060-snap-gene-0.0 ID=maker-scaffold3945_size7060-snap-gene-0.0|Name=cytochrome c oxidase|organism=Tigriopus kingsejongensis|type=gene|length=918bp|location=Sequence derived from alignment at scaffold3945_size7060:214..1131- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'cytochrome c oxidase' has the following synonyms
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