cytochrome c oxidase, maker-scaffold3945_size7060-snap-gene-0.0 (gene) Tigriopus kingsejongensis

Overview
Namecytochrome c oxidase
Unique Namemaker-scaffold3945_size7060-snap-gene-0.0
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of cytochrome c oxidase vs. SwissProt
Match: gi|1352177|sp|P98000.1|COXN_BRADU (RecName: Full=Alternative cytochrome c oxidase subunit 1; AltName: Full=Alternative cytochrome c oxidase polypeptide I; AltName: Full=Cytochrome BB3 subunit 1; AltName: Full=Oxidase BB(3) subunit 1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.811e-9
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0
Query:   26 MDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            +DA+ YL  +T+HG IMV ++LTA   G F N LIPL +GARDM   ++NM+S
Sbjct:   76 IDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPYVNMLS 128          
BLAST of cytochrome c oxidase vs. nr
Match: gi|1119326133|ref|WP_072303473.1| (cytochrome c oxidase subunit I [Cellulophaga fucicola] >gi|1102059578|emb|SFW46128.1| cytochrome c oxidase subunit 1 [Cellulophaga fucicola])

HSP 1 Score: 154.836 bits (390), Expect = 1.087e-40
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 0
Query:    1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            MQLAWPGE+FP+FEA+LGKWAPGGVMDADVYLALVT+HGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASG LNMIS
Sbjct:   56 MQLAWPGESFPVFEALLGKWAPGGVMDADVYLALVTMHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGLLNMIS 133          
BLAST of cytochrome c oxidase vs. nr
Match: gi|652740681|ref|WP_027064970.1| (MULTISPECIES: cytochrome-c oxidase [Maribacter] >gi|1097826589|emb|SFR63373.1| cytochrome c oxidase subunit 1 [Maribacter stanieri])

HSP 1 Score: 154.836 bits (390), Expect = 1.097e-40
Identity = 72/78 (92.31%), Postives = 77/78 (98.72%), Query Frame = 0
Query:    1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            MQLAWPGE+FPIFE +LGKWAPGGVMDAD+YLALVT+HGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct:   63 MQLAWPGESFPIFETLLGKWAPGGVMDADIYLALVTMHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVS 140          
BLAST of cytochrome c oxidase vs. nr
Match: gi|1011136360|ref|WP_062058100.1| (cytochrome c oxidase subunit I [Sediminicola sp. YIK13] >gi|946528912|gb|ALM08903.1| cytochrome C oxidase [Sediminicola sp. YIK13])

HSP 1 Score: 154.836 bits (390), Expect = 1.143e-40
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0
Query:    1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            MQLAWPGE+FPIFEA+LGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASG LNMIS
Sbjct:   63 MQLAWPGESFPIFEALLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGLLNMIS 140          
BLAST of cytochrome c oxidase vs. nr
Match: gi|955657601|ref|WP_058103945.1| (MULTISPECIES: cytochrome c oxidase subunit I [Maribacter] >gi|955403110|gb|KSA15066.1| Sulfatase, family S1-28 [Maribacter dokdonensis DSW-8] >gi|1085850905|emb|SDT11487.1| cytochrome c oxidase subunit 1 [Maribacter sp. MAR_2009_60] >gi|1089013967|emb|SEB86488.1| cytochrome c oxidase subunit 1 [Maribacter dokdonensis] >gi|1098500734|gb|APA64813.1| cytochrome C oxidase [Maribacter sp. 1_2014MBL_MicDiv] >gi|1269373263|gb|PHN94425.1| cytochrome c oxidase subunit I [Maribacter sp. 6B07])

HSP 1 Score: 154.836 bits (390), Expect = 1.227e-40
Identity = 72/78 (92.31%), Postives = 77/78 (98.72%), Query Frame = 0
Query:    1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            MQLAWPGE+FP+FEA+LGKWAPGGVMDADVYLALVT+HGTIMVFFVLT GLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct:   63 MQLAWPGESFPVFEALLGKWAPGGVMDADVYLALVTMHGTIMVFFVLTQGLSGTFSNLLIPLQIGARDMASGFLNMVS 140          
BLAST of cytochrome c oxidase vs. nr
Match: gi|1055370029|ref|WP_067033578.1| (cytochrome c oxidase subunit I [Muricauda sp. CP2A])

HSP 1 Score: 154.451 bits (389), Expect = 1.229e-40
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 0
Query:    1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            MQLAWPGE+FPIFEA+LGKWAP GVMDAD+YLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct:   58 MQLAWPGESFPIFEALLGKWAPDGVMDADIYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMLS 135          
The following BLAST results are available for this feature:
BLAST of cytochrome c oxidase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of cytochrome c oxidase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1352177|sp|P98000.1|COXN_BRADU2.811e-952.83RecName: Full=Alternative cytochrome c oxidase sub... [more]
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BLAST of cytochrome c oxidase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1119326133|ref|WP_072303473.1|1.087e-4093.59cytochrome c oxidase subunit I [Cellulophaga fucic... [more]
gi|652740681|ref|WP_027064970.1|1.097e-4092.31MULTISPECIES: cytochrome-c oxidase [Maribacter] >g... [more]
gi|1011136360|ref|WP_062058100.1|1.143e-4096.15cytochrome c oxidase subunit I [Sediminicola sp. Y... [more]
gi|955657601|ref|WP_058103945.1|1.227e-4092.31MULTISPECIES: cytochrome c oxidase subunit I [Mari... [more]
gi|1055370029|ref|WP_067033578.1|1.229e-4093.59cytochrome c oxidase subunit I [Muricauda sp. CP2A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold3945_size7060supercontigscaffold3945_size7060:214..1131 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold3945_size7060-snap-gene-0.0-mRNA-1maker-scaffold3945_size7060-snap-gene-0.0-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold3945_size7060:214..1131-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold3945_size7060-snap-gene-0.0 ID=maker-scaffold3945_size7060-snap-gene-0.0|Name=cytochrome c oxidase|organism=Tigriopus kingsejongensis|type=gene|length=918bp|location=Sequence derived from alignment at scaffold3945_size7060:214..1131- (Tigriopus kingsejongensis)
GATGCAGTTGGCTTGGCCAGGTGAAGCTTTTCCAATATTTGAGGCAGTAC TCGGTAAATGGGCTCCGGGAGGGGTCATGGATGCAGATGTATATTTGGCT TTGGTAACTATACACGGTACCATTATGGTATTCTTTGTATTAACAGCAGG TTTAAGTGGCACCTTTAGTAACCTTCTAATTCCCTTGCAGATAGGAGCTC GCGATATGGCATCCGGTTTTCTAAATATGATATCGTATTGGTTGTTTTTT GTGTCTAGTGTTATAATGATTTGTTCCTTATTTGTTGAGGCAGGTCCTGC GGCCGCGGGTTGGACAATTTATCCACCTTTAAGTGCATTGCCTATGGCAC AGCCAGGATCAGGAATGGGAATGACGTTGTGGTTGGTTTCTATGGCAATT TTTATTGCTTCTTCCCTAATAGGTTCACTAAATTACATTGTTACCGTAAT CAATCTTAGAACAAAAGGGATGTCAATGACAAGGTTGCCATTAACTATTT GGGCATTCTTTGTTACTGCAATTATTGGGGTGGTTTCATTTCCTGTATTA CTTTCTGCAGCATTGATGTTAATAATGGATAGAAGTTTTGGAACATCTTT TTTCTTGTCCGACATCTTTATACAAGGAGAGGTATTACATTACCAAGGTG GTTCACCTGTTTTGTATGAGCACCTATTTTGGTTTTTAGGGCATCCAGAG GTGTATATTGTTCTTTTGCCAGCGTTAGGAATTACGTCGGAAGTAATGTC TACAAACGCTAGAAAGCCAATTTTTGGTTACAGGGCAATGGTAGCCTCTA TTTTGGCGATTGCCTTTTTATCTACTATTGTTTGGGGTCACCATATGTTT GTTTCTGGTATGAATCCGTTCTTGGGGTCTGTTTTTACTTTTACTACATT GCTTATTGCTATTCCATC
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Synonyms
The feature 'cytochrome c oxidase' has the following synonyms
Synonym
Tk12417
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