adp-ribosylation factor gtpase-activating protein 1-like isoform x3, maker-scaffold396_size184579-snap-gene-0.24 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. L. salmonis genes
Match: EMLSAG00000000350 (supercontig:LSalAtl2s:LSalAtl2s104:877817:880136:-1 gene:EMLSAG00000000350 transcript:EMLSAT00000000350 description:"maker-LSalAtl2s104-snap-gene-8.22") HSP 1 Score: 79.7221 bits (195), Expect = 1.985e-19 Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 0
Query: 10 LSELRPKDENNKCFECQTHNPQWVSVTYGIWICLECSGQHRSLGVHMSFVRSVTMD 65
L+ + N CF+C ++NP W SVTYGI+IC++CSG HRSLGVH++FVRS +D
Sbjct: 13 FKRLKSQSANKVCFDCGSNNPTWSSVTYGIFICIDCSGIHRSLGVHLTFVRSTVLD 68
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. L. salmonis genes
Match: EMLSAG00000009887 (supercontig:LSalAtl2s:LSalAtl2s643:209342:213124:-1 gene:EMLSAG00000009887 transcript:EMLSAT00000009887 description:"maker-LSalAtl2s643-augustus-gene-2.25") HSP 1 Score: 74.3294 bits (181), Expect = 1.855e-17 Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 0
Query: 2 ASPKTRRALSELRPKDENNKCFECQTHNPQWVSVTYGIWICLECSGQHRSLGVHMSFVRSVTMDKWK 68
A K +R +L NN+C +C +P+W S+ GI +C+ECSG HRSLGVH+S VRS+ +D W+
Sbjct: 393 AVRKVKRTAGQLLQIPGNNRCCDCGAFDPKWASINLGITLCIECSGVHRSLGVHVSKVRSIELDGWE 459
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. L. salmonis genes
Match: EMLSAG00000002121 (supercontig:LSalAtl2s:LSalAtl2s139:1066244:1170379:-1 gene:EMLSAG00000002121 transcript:EMLSAT00000002121 description:"maker-LSalAtl2s139-augustus-gene-11.8") HSP 1 Score: 65.855 bits (159), Expect = 1.417e-14 Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 0
Query: 19 NNKCFECQTHNPQWVSVTYGIWICLECSGQHRSLGVHMSFVRSVTMDKWKEFCPGKL 75
N+KC +C + +P W S+ G+ +C+ECSG HR LG H+S VRS+ +D+W PG L
Sbjct: 605 NHKCVDCDSSSPLWASINLGVLMCIECSGVHRKLGSHISRVRSLDLDEWP---PGHL 658
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. L. salmonis genes
Match: EMLSAG00000002967 (supercontig:LSalAtl2s:LSalAtl2s170:1030725:1032950:-1 gene:EMLSAG00000002967 transcript:EMLSAT00000002967 description:"maker-LSalAtl2s170-augustus-gene-10.29") HSP 1 Score: 46.9802 bits (110), Expect = 7.378e-8 Identity = 16/46 (34.78%), Postives = 26/46 (56.52%), Query Frame = 0
Query: 22 CFECQTHNPQWVSVTYGIWICLECSGQHRSLGVHMSFVRSVTMDKW 67
C +C P W S+ GI +C +C HR+LG H+S ++++ W
Sbjct: 16 CGDCGALGPSWASINRGILLCSDCCSVHRTLGRHVSHIKALRQSNW 61
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. SwissProt
Match: gi|729595|sp|P38682.1|GLO3_YEAST (RecName: Full=ADP-ribosylation factor GTPase-activating protein GLO3; Short=ARF GAP GLO3) HSP 1 Score: 76.6406 bits (187), Expect = 8.357e-17 Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 0
Query: 6 TRRALSELRPKDENNKCFECQTHNPQWVSVTYGIWICLECSGQHRSLGVHMSFVRSVTMDKW 67
T++ +L EN CF+C NP W SV +G+ +C++CS HR++GVH++FV+S T+DKW
Sbjct: 15 TQQVFQKLGSNMENRVCFDCGNKNPTWTSVPFGVMLCIQCSAVHRNMGVHITFVKSSTLDKW 76
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. SwissProt
Match: gi|166214908|sp|Q9D8S3.2|ARFG3_MOUSE (RecName: Full=ADP-ribosylation factor GTPase-activating protein 3; Short=ARF GAP 3) HSP 1 Score: 76.2554 bits (186), Expect = 1.029e-16 Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 0
Query: 1 MASPKTRRALS---ELRPKDENNKCFECQTHNPQWVSVTYGIWICLECSGQHRSLGVHMSFVRSVTMD-KWKEF 70
M P + L+ LR N CF+C NP W S++YG+++C++CSG HRSLGVH+SF+RS +D W F
Sbjct: 1 MGDPSKQDILAIFKRLRSVPTNKVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWF 74
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. SwissProt
Match: gi|123917636|sp|Q28CM8.1|ARFG2_XENTR (RecName: Full=ADP-ribosylation factor GTPase-activating protein 2; Short=ARF GAP 2; AltName: Full=GTPase-activating protein ZNF289; AltName: Full=Zinc finger protein 289) HSP 1 Score: 75.8702 bits (185), Expect = 1.613e-16 Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 0
Query: 10 LSELRPKDENNKCFECQTHNPQWVSVTYGIWICLECSGQHRSLGVHMSFVRSVTMD-KWKEF 70
LR N CF+C NP W S+ YG+++C++CSG HRSLGVH+SF+RS +D W F
Sbjct: 14 FKRLRAAPTNKSCFDCGAKNPSWASIPYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWSWF 75
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. SwissProt
Match: gi|123780788|sp|Q3MID3.1|ARFG2_RAT (RecName: Full=ADP-ribosylation factor GTPase-activating protein 2; Short=ARF GAP 2; AltName: Full=GTPase-activating protein ZNF289; AltName: Full=Zinc finger protein 289) HSP 1 Score: 75.0998 bits (183), Expect = 2.449e-16 Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0
Query: 10 LSELRPKDENNKCFECQTHNPQWVSVTYGIWICLECSGQHRSLGVHMSFVRSVTMD 65
LR N CF+C +P W S+TYG+++C++CSG HRSLGVH+SF+RS +D
Sbjct: 14 FKRLRAIPTNKACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELD 69
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. SwissProt
Match: gi|81880083|sp|Q99K28.1|ARFG2_MOUSE (RecName: Full=ADP-ribosylation factor GTPase-activating protein 2; Short=ARF GAP 2; AltName: Full=GTPase-activating protein ZNF289; AltName: Full=Zinc finger protein 289) HSP 1 Score: 75.0998 bits (183), Expect = 2.521e-16 Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 0
Query: 2 ASP---KTRRALSELRPKDENNKCFECQTHNPQWVSVTYGIWICLECSGQHRSLGVHMSFVRSVTMD 65
ASP + + LR N CF+C +P W S+TYG+++C++CSG HRSLGVH+SF+RS +D
Sbjct: 3 ASPSKTEIQTIFKRLRAIPTNKACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELD 69
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. nr
Match: gi|1069666684|ref|XP_018308781.1| (PREDICTED: ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [Trachymyrmex zeteki] >gi|1069666687|ref|XP_018308789.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [Trachymyrmex zeteki]) HSP 1 Score: 139.428 bits (350), Expect = 9.059e-38 Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 0
Query: 1 MASPKTRRALSELRPKDENNKCFECQTHNPQWVSVTYGIWICLECSGQHRSLGVHMSFVRSVTMDKWKE 69
MASP+TRR LSEL+PKDENNKCFEC HNPQWVSVTYGIWICLECSG+HR LGVH+SFVRSV+MDKWK+
Sbjct: 1 MASPRTRRVLSELKPKDENNKCFECGNHNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSVSMDKWKD 69
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. nr
Match: gi|1036898145|ref|XP_017071653.1| (PREDICTED: ADP-ribosylation factor GTPase-activating protein 1 isoform X2 [Drosophila eugracilis]) HSP 1 Score: 139.813 bits (351), Expect = 1.353e-37 Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = 0
Query: 1 MASPKTRRALSELRPKDENNKCFECQTHNPQWVSVTYGIWICLECSGQHRSLGVHMSFVRSVTMDKWKEF 70
MASP+TRR L EL+P+DEN+KCFEC THNPQWVSVTYGIWICLECSG+HRSLGVH+SFVRSVTMDKWK+
Sbjct: 1 MASPRTRRVLQELKPQDENSKCFECGTHNPQWVSVTYGIWICLECSGKHRSLGVHLSFVRSVTMDKWKDI 70
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. nr
Match: gi|1061465555|gb|ODM87590.1| (ADP-ribosylation factor GTPase-activating protein 1, partial [Orchesella cincta]) HSP 1 Score: 133.65 bits (335), Expect = 1.379e-37 Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0
Query: 1 MASPKTRRALSELRPKDENNKCFECQTHNPQWVSVTYGIWICLECSGQHRSLGVHMSFVRSVTMDKWKE 69
MASPKTRR L +LR KDENNKCFEC HNPQWVSVTYGIWICLECSG+HR LGVH+SFVRSVTMDKWK+
Sbjct: 1 MASPKTRRVLQDLRHKDENNKCFECGAHNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSVTMDKWKD 69
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. nr
Match: gi|769847906|ref|XP_011635305.1| (PREDICTED: ADP-ribosylation factor GTPase-activating protein 1 isoform X2 [Pogonomyrmex barbatus]) HSP 1 Score: 138.658 bits (348), Expect = 1.457e-37 Identity = 58/70 (82.86%), Postives = 66/70 (94.29%), Query Frame = 0
Query: 1 MASPKTRRALSELRPKDENNKCFECQTHNPQWVSVTYGIWICLECSGQHRSLGVHMSFVRSVTMDKWKEF 70
MASP+TRR LSEL+P+DENNKCFEC +HNPQWVSVTYGIWICLECSG+HR LGVH+SFVRSV+MDKWK+
Sbjct: 1 MASPRTRRVLSELKPRDENNKCFECGSHNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSVSMDKWKDI 70
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. nr
Match: gi|769847904|ref|XP_011635304.1| (PREDICTED: ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [Pogonomyrmex barbatus]) HSP 1 Score: 138.658 bits (348), Expect = 1.587e-37 Identity = 58/70 (82.86%), Postives = 66/70 (94.29%), Query Frame = 0
Query: 1 MASPKTRRALSELRPKDENNKCFECQTHNPQWVSVTYGIWICLECSGQHRSLGVHMSFVRSVTMDKWKEF 70
MASP+TRR LSEL+P+DENNKCFEC +HNPQWVSVTYGIWICLECSG+HR LGVH+SFVRSV+MDKWK+
Sbjct: 1 MASPRTRRVLSELKPRDENNKCFECGSHNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSVSMDKWKDI 70 The following BLAST results are available for this feature:
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 4
BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of adp-ribosylation factor gtpase-activating protein 1-like isoform x3 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold396_size184579:84679..85133- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold396_size184579-snap-gene-0.24 ID=maker-scaffold396_size184579-snap-gene-0.24|Name=adp-ribosylation factor gtpase-activating protein 1-like isoform x3|organism=Tigriopus kingsejongensis|type=gene|length=455bp|location=Sequence derived from alignment at scaffold396_size184579:84679..85133- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'adp-ribosylation factor gtpase-activating protein 1-like isoform x3' has the following synonyms
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