intraflagellar transport protein 25 homolog, maker-scaffold405_size181423-snap-gene-0.33 (gene) Tigriopus kingsejongensis

Overview
Nameintraflagellar transport protein 25 homolog
Unique Namemaker-scaffold405_size181423-snap-gene-0.33
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of intraflagellar transport protein 25 homolog vs. L. salmonis genes
Match: EMLSAG00000000065 (supercontig:LSalAtl2s:LSalAtl2s100:464017:469858:-1 gene:EMLSAG00000000065 transcript:EMLSAT00000000065 description:"maker-LSalAtl2s100-snap-gene-4.25")

HSP 1 Score: 50.447 bits (119), Expect = 1.653e-7
Identity = 27/108 (25.00%), Postives = 50/108 (46.30%), Query Frame = 0
Query:   23 RTGTKPWISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVICNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIRG 130
            ++  KPWISTG++PQ IV+ F     +    +K Y VKE E   S      +F ++  + I +        +  +  +    +   ++  I  G+D+   +Y +S+ G
Sbjct:   31 KSTNKPWISTGLFPQFIVIQFPDTMTVQSCEIKCYKVKECEFLRSQG--KGQFLSIERKVIDMDPIRTDSPLYLDFKDFEEFDTDSVKFLIHSGYDAVVGVYSISVMG 136          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|1020502216|ref|XP_016089937.1| (PREDICTED: intraflagellar transport protein 25 homolog [Sinocyclocheilus grahami])

HSP 1 Score: 65.4698 bits (158), Expect = 4.047e-9
Identity = 31/102 (30.39%), Postives = 56/102 (54.90%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVICNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIRG 130
            WISTG++PQ  ++ F     I  V + S+N+K + +   ++D A +F AV+       F   +  +  N   + V+N  HLR  IL G+D F +++++S++ 
Sbjct:   76 WISTGMFPQEFIIRFPDNMKISTVSIHSFNIKRLRIEKGTSDDAEQFEAVA----DTEFEHTESSLQANDISVNVLNTTHLRFLILSGYDHFVSVHKVSVQS 173          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|226443133|ref|NP_001140050.1| (intraflagellar transport protein 25 homolog [Salmo salar] >gi|221221500|gb|ACM09411.1| Placental protein 25 [Salmo salar])

HSP 1 Score: 64.3142 bits (155), Expect = 4.383e-9
Identity = 33/101 (32.67%), Postives = 57/101 (56.44%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVI-CNGNEIGVINAQHLRLNILGGHDSFCAIYQLSI 128
            W+STG++PQ  ++ F+    I +V +  YNVK +++  S +D AT+F A+S +    + G  Q   I  NG       A HLR  +  G+D F +++++S+
Sbjct:   37 WMSTGMFPQEFIIRFAESMKIALVTMHCYNVKTLKIEKSISDDATDFEAISEKEFEHTEGHLQTNDIPLNGT-----TATHLRFIVTSGYDHFVSVHRVSV 132          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|1009594846|ref|XP_015926225.1| (intraflagellar transport protein 25 homolog [Parasteatoda tepidariorum])

HSP 1 Score: 64.3142 bits (155), Expect = 4.812e-9
Identity = 33/103 (32.04%), Postives = 55/103 (53.40%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVICNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIRGS 131
            W +TG+YPQ  V+  S    +  + + SYNVK++ +  S  +   EF  V       S GAPQ++ +       +  A+ L+  I  G+D FCA+Y++S+ G+
Sbjct:   37 WATTGLYPQCFVIGLSEPADVKSISISSYNVKDLRIEKSIKEDPIEFEEVLETVFESSEGAPQQKAL----STSLCEARFLKFIIKSGYDHFCAVYKVSMNGT 135          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|47215908|emb|CAG00383.1| (unnamed protein product [Tetraodon nigroviridis])

HSP 1 Score: 64.3142 bits (155), Expect = 5.407e-9
Identity = 30/102 (29.41%), Postives = 60/102 (58.82%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVI-CNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIR 129
            W+STG++PQ  ++ F+    +  V ++SYNVK +++  +++  A++F +++ +      G  Q   +  NG     I+A HLR  I  GHD F +++++S++
Sbjct:   37 WMSTGLFPQEFIIRFTESTNVSAVTIESYNVKHLKLEKNTSQSASQFESITEKEFEHVTGCLQSNTVPLNG-----IDATHLRFIITSGHDHFVSVHRVSVQ 133          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|1101552726|ref|XP_018942290.1| (PREDICTED: intraflagellar transport protein 25 homolog [Cyprinus carpio] >gi|1101552728|ref|XP_018942291.1| PREDICTED: intraflagellar transport protein 25 homolog [Cyprinus carpio] >gi|966661619|gb|KTF96215.1| hypothetical protein cypCar_00002069 [Cyprinus carpio])

HSP 1 Score: 64.3142 bits (155), Expect = 5.515e-9
Identity = 31/101 (30.69%), Postives = 55/101 (54.46%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVICNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIR 129
            WISTG++PQ  ++ F     I  V + SYN+K + +   ++D A +F AV+       F   +  +  N   + V+N  HLR  IL G+  F +++++S++
Sbjct:   37 WISTGMFPQEFIIRFPDNMKIFTVSIHSYNIKRLRIEKGTSDDAEKFEAVA----DTEFEHTENSLQANDISVNVLNTTHLRFLILSGYGPFVSVHKVSVQ 133          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|1158860064|ref|XP_020323755.1| (intraflagellar transport protein 25 homolog [Oncorhynchus kisutch])

HSP 1 Score: 64.3142 bits (155), Expect = 5.552e-9
Identity = 33/101 (32.67%), Postives = 57/101 (56.44%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVI-CNGNEIGVINAQHLRLNILGGHDSFCAIYQLSI 128
            W+STG++PQ  ++ F+    I +V +  YNVK +++  S +D AT+F A+S +    + G  Q   I  NG       A HLR  +  G+D F +++++S+
Sbjct:   37 WMSTGMFPQEFIIRFAQSMKIALVTMHCYNVKTLKIEKSISDDATDFEAISEKEFEHTEGHLQTNDIPLNGT-----TATHLRFIVTSGYDHFVSVHRVSV 132          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|1211366984|ref|XP_021460967.1| (intraflagellar transport protein 25 homolog isoform X2 [Oncorhynchus mykiss] >gi|1367434823|ref|XP_024271276.1| intraflagellar transport protein 25 homolog [Oncorhynchus tshawytscha] >gi|642107398|emb|CDQ73049.1| unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 63.929 bits (154), Expect = 5.833e-9
Identity = 33/101 (32.67%), Postives = 57/101 (56.44%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVI-CNGNEIGVINAQHLRLNILGGHDSFCAIYQLSI 128
            W+STG++PQ  ++ F+    I +V +  YNVK +++  S +D AT+F A+S +    + G  Q   I  NG       A HLR  +  G+D F +++++S+
Sbjct:   37 WMSTGMFPQEFIIRFAESMKIALVTMHCYNVKTLKIEKSISDDATDFEAISEKEFEHTEGHLQTNDIPLNGT-----TATHLRFIVTSGYDHFVSVHRVSV 132          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|1316150829|ref|XP_023220576.1| (intraflagellar transport protein 25 homolog [Centruroides sculpturatus])

HSP 1 Score: 65.0846 bits (157), Expect = 7.055e-9
Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVICNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIRG-----SDADHSVN-FKPSHSAQLPI 149
            W +TG+YPQS VL    +  ++ +   SYNVK +    SS  +  EF+  +   +  + G+ Q+  +  GNE     A++LR  I  GHD FCA+Y++ ++      + +  + N  +P   AQ+P+
Sbjct:   63 WSTTGLYPQSFVLALPNITTVENITFYSYNVKRLTTEKSSESEPMEFKPYAEIDLQATDGSLQK--VTFGNERN--EARYLRFIIETGHDHFCAVYKVQVKSRLSYTTSSSLTRNILQPLFLAQIPV 185          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|410923637|ref|XP_003975288.1| (PREDICTED: intraflagellar transport protein 25 homolog [Takifugu rubripes])

HSP 1 Score: 63.5438 bits (153), Expect = 8.935e-9
Identity = 32/102 (31.37%), Postives = 58/102 (56.86%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVI-CNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIR 129
            W+STG++PQ  ++ F+    I  V + SYNVK +++  +++  A++F +V+ +      G  Q   +  NG     I A HLR  I  GHD F +++++S++
Sbjct:   37 WMSTGLFPQEFIIGFTHSTNISAVTMDSYNVKHLKLEKNTSQSASQFESVTEKEFDHVTGCLQSNTLPVNG-----IVATHLRFIITSGHDHFVSVHRVSVQ 133          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|742243291|ref|XP_010863152.1| (PREDICTED: intraflagellar transport protein 25 homolog [Esox lucius])

HSP 1 Score: 63.5438 bits (153), Expect = 9.639e-9
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVI-CNGNEIGVINAQHLRLNILGGHDSFCAIYQLSI 128
            WISTG++PQ  ++ F+    I +V L SYNVK +++  S +D AT+F  +S + +    G  Q   I  NG     +   HLR  +  G D F +++++SI
Sbjct:   37 WISTGMFPQEFIIRFAESMKISLVTLHSYNVKTLKIEKSISDDATDFEPISEKQLEHIEGHLQTTDIPLNG-----LTVTHLRFIVTSGFDHFVSVHRISI 132          
The following BLAST results are available for this feature:
BLAST of intraflagellar transport protein 25 homolog vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000000651.653e-725.00supercontig:LSalAtl2s:LSalAtl2s100:464017:469858:-... [more]
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BLAST of intraflagellar transport protein 25 homolog vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of intraflagellar transport protein 25 homolog vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1020502216|ref|XP_016089937.1|4.047e-930.39PREDICTED: intraflagellar transport protein 25 hom... [more]
gi|226443133|ref|NP_001140050.1|4.383e-932.67intraflagellar transport protein 25 homolog [Salmo... [more]
gi|1009594846|ref|XP_015926225.1|4.812e-932.04intraflagellar transport protein 25 homolog [Paras... [more]
gi|47215908|emb|CAG00383.1|5.407e-929.41unnamed protein product [Tetraodon nigroviridis][more]
gi|1101552726|ref|XP_018942290.1|5.515e-930.69PREDICTED: intraflagellar transport protein 25 hom... [more]
gi|1158860064|ref|XP_020323755.1|5.552e-932.67intraflagellar transport protein 25 homolog [Oncor... [more]
gi|1211366984|ref|XP_021460967.1|5.833e-932.67intraflagellar transport protein 25 homolog isofor... [more]
gi|1316150829|ref|XP_023220576.1|7.055e-930.71intraflagellar transport protein 25 homolog [Centr... [more]
gi|410923637|ref|XP_003975288.1|8.935e-931.37PREDICTED: intraflagellar transport protein 25 hom... [more]
gi|742243291|ref|XP_010863152.1|9.639e-934.65PREDICTED: intraflagellar transport protein 25 hom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold405_size181423supercontigscaffold405_size181423:5368..7677 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold405_size181423-snap-gene-0.33-mRNA-1maker-scaffold405_size181423-snap-gene-0.33-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold405_size181423:5368..7677+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold405_size181423-snap-gene-0.33 ID=maker-scaffold405_size181423-snap-gene-0.33|Name=intraflagellar transport protein 25 homolog|organism=Tigriopus kingsejongensis|type=gene|length=2310bp|location=Sequence derived from alignment at scaffold405_size181423:5368..7677+ (Tigriopus kingsejongensis)
ATGGAGGAGATCGCTTTAGAAGACGCGGGTACGAGAGTAACCTATGCGAC CAGCCACCATGGACGATATCCTCCCGCTAATCTTCTGGAAGAGTGAGTGT CCTTAATCGTTCTATGGTCAGTACAAAAGATTCACTCCAAACGCTTCCAA TGCACTGCCAGAACCGGGACGAAACCATGGATCAGCACAGGGATCTACCC TCAGAGCATCGTTCTCACCTTCTCCGGCCTGAAAGCCATCGACATGGTGG TGCTGAAAAGCTACAATGGTACGCCAGAGCCTGAAGGTGTTCAGTCCATT TTTTGAATCATCTTTCGCCCCTTCCAGTCAAAGAGATGGAAGTGGCCAGC TCCTCCAATGACCAGGCTACCGAGTTCAGGGCAGTGAGCATTCAAACCAT CCCATTGAGCTTTGGAGCACCACAAGAGCAAGTCATTTGCAACGGCAATG AAATCGGAGGTGAGGCGCTTCCAGAAGCATTTACACTGCCTCTCTTGTCT TTTAATTGAGTCTTCATCACTCCCGTATTCCAGGACATCCTCATGATGTG AATTGACCCAACGGGAAGGAATGCGTCATTTGCAGGGGTCGGAAAACGTT ATGAAAAACTTGGAAGTGAAGTTTTCACGTTATTTACGCTTTTGGGCAAA CAGATTGACATTTTTCACACCTTTCGCGCTCTACTGGGCTTTTTCCTTTT GTGGGGGGCTTTCCGCAACTTTTTCCCTTTAAACGTATAGTCTTTGCATT TTTTGCTTGTGAACGTAATTAAGAAAAGAGGCCCCAATCGACTTAACTCT GTGGTAAAAAGTTTACAAGAGCAACACAATATTCTGCAGGGTGTGTGGAA AGCCATTCTTTGACTATTCAAAGTGAAAGATACAGTATATAATAAAGTAG GATGGCAATAATCTGCATTATGATAGGCTGTATGTAGCCTTTGAGACATG GAACACATTTCTTAACAATTAAATTATCACGTTTTAGCAAACAATCTTTT TTCTTCAAAACATTTGCAATCTTCAGATCATGTTCGAATGATTTGAACAC CTAATTTTAACGATTTTTACAACATTTGTTGCTCATTTACTTCCCCTGAT AAACCCATTTGTTGCCAATCGTTTTTGACTTTTTATTCCAACCCCTAGTC ATTAGCGACCGATTGTCAGACTCCCCCCACCGTCGAGTGTAAAGTATATG CTATGTTGCATAGCACGCATACAAACATGATTCTAAATATATCACAGGGC ACTAGATTCGATTGTCAGTCGAAGTTAATGGATACCTTCGGGGACCCAAT TCAGCCCCTTATTGCTGGGGCGACTGCATCTTTATGAGATCGCCAACGCA ATTGTAATACATCTCTACCCTGCTTTATTGAAGTTTTTATAGGTGGACGC CGTACTTGGCGAGGCAAGAGTACAAGTATACAAGTACTTGGCGAGACTAA CGTAGTAAAATAGTCGACCTCGAGGAACTTCCCAAACACGACTCAGGTCA GACACTTCTTTACAGTGATCAATGCTCAACATCTCCGATTGAACATCCTG GGCGGTCATGACAGCTTTTGCGCCATCTACCAACTCTCGATTAGGGGATC CGACGCCGACCATTCGGTCAACTTCAAGCCGTCTCACAGGTAAGACTTGA TGCAAGTACTTAGTAAGGACGACCGCCCGAAAGCCGAGTTTTACCCCTGC ACATGAGCTTTCTTGCCCATTCAGTGCCCAGTTGCCGATCCGAGACGATG TCCAGACACCGACCTCATGGCCCCTCGGAGCCGGCCCTGGAGAGGGAGAC GATCCTGGTACAACGGAAGCGCGGAAATTCGAGTTTTCCTTCGGCCAGCC GAAGCCCAAACCATCCAGTGAGCCCTTTGTGTTCAACTCGAGCCAGGAGG AGGCCGTGGCGAAAGCGGCGGAAAACTTTGGATTCCGGGTCCCAACGGCC AAGCGACGCCTGGCCACTCGGGAGGAGGAGAGCGAGGACGAGATGGAGAA CGATAAGATCGTGAACTTTGACGAGATGCCTTTACCGGCACCCACCACGC ACAATCTCGAGGGGCCATACGAGGGCGAGCTCGAGGAGAGCAACGACTCG GACTCGGAGTTGGGTGGGAACTGGAAGGAGAGCGTGTACGAGGATGAGGC GCCTCCTCAGATGCCCTTGGCTACCAATCCGGAGCTGTTCCCACTTCAAG ACGACGAGTCCGACGAGGCGGAGGAAGAGGGCAAGAGTCAGGAGGAAGAT CGCGTGCAAACCTTTGGTGAAGTGTTCAACATGCTGGATCAGGTGGCGGA TTCGGATTAG
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Synonyms
The feature 'intraflagellar transport protein 25 homolog' has the following synonyms
Synonym
Tk08177
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