short-chain dehydrogenase, maker-scaffold422_size175911-snap-gene-0.35 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of short-chain dehydrogenase vs. L. salmonis genes
Match: EMLSAG00000010213 (supercontig:LSalAtl2s:LSalAtl2s679:139734:140720:-1 gene:EMLSAG00000010213 transcript:EMLSAT00000010213 description:"augustus_masked-LSalAtl2s679-processed-gene-1.4") HSP 1 Score: 94.3597 bits (233), Expect = 3.001e-25 Identity = 56/148 (37.84%), Postives = 90/148 (60.81%), Query Frame = 0 Query: 8 MDQRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCDILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTD--FRNTLELNLIAPFLLTQAALPHLEKTKGN--ILYISSIAG 151 + +++VLITGA+ GIG G H +G KL+++ARR+ +L +V+E CK D++ ++L G AC+ V ET +++G LDVV++NAG + + VT F +++ LN+ + TQ A +LEK+K I+ +SSIAG Sbjct: 4 LGKKIVLITGASGGIGEGTALHFASLG-SKLSLVARRKEELERVSEACKAKGAQDVIYTVQDLSSGEACSACVDETFNYYGGLDVVVNNAG---VMYGQKLQEVTPEIFDHSMNLNIHSALRXTQXATKYLEKSKKQPAIVNVSSIAG 147
BLAST of short-chain dehydrogenase vs. L. salmonis genes
Match: EMLSAG00000010112 (supercontig:LSalAtl2s:LSalAtl2s668:190059:194758:1 gene:EMLSAG00000010112 transcript:EMLSAT00000010112 description:"augustus_masked-LSalAtl2s668-processed-gene-1.1") HSP 1 Score: 74.3294 bits (181), Expect = 3.691e-17 Identity = 49/142 (34.51%), Postives = 77/142 (54.23%), Query Frame = 0 Query: 11 RVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCDILVLPKNLLD-GSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHLEKTKGNILYISSIAG 151 +V LITGA+SGIG +G L+I R L++ +EC+ +L + LD V+ET++ FGRLD++++NAG S+ + S+ + + +N+ + F T A PHL KTKGNI+ +SS+ G Sbjct: 7 KVALITGASSGIGRSTAILFAKLGA-TLSITGRDIENLQKTAKECEGQGGTSAPLLIQASLDIEEDVKRVVEETINRFGRLDILVNNAGI-LERGSIENTSLESYDRVMNINVRSVFQTTSLATPHLIKTKGNIVNVSSVNG 146
BLAST of short-chain dehydrogenase vs. L. salmonis genes
Match: EMLSAG00000010216 (supercontig:LSalAtl2s:LSalAtl2s679:144940:154519:1 gene:EMLSAG00000010216 transcript:EMLSAT00000010216 description:"maker-LSalAtl2s679-augustus-gene-1.45") HSP 1 Score: 60.4622 bits (145), Expect = 1.151e-11 Identity = 45/144 (31.25%), Postives = 68/144 (47.22%), Query Frame = 0 Query: 13 VLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCDILVLPKNLLDG-SACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHLEKTK----GNILYISSIAG 151 VLITG +SGIG K ++ G + + AR + KL EE K + + ++ G S +ET+ G L +VI + G S A ++ S+ D+ + +N +T+ LPHL+K I ISSIAG Sbjct: 529 VLITGGSSGIGKATAKEVLKRGTSLVTLWARNKGKLEDAREEIIKETGGRVNIFSVDVTGGLSGIHNVFEETIRDGGDLRMVI-HCAGSSMAGTIEDTSIEDYNCMMNINYFGTVNVTKVVLPHLKKENKEIPSRITLISSIAG 671
BLAST of short-chain dehydrogenase vs. L. salmonis genes
Match: EMLSAG00000008317 (supercontig:LSalAtl2s:LSalAtl2s503:424275:425910:1 gene:EMLSAG00000008317 transcript:EMLSAT00000008317 description:"maker-LSalAtl2s503-augustus-gene-4.14") HSP 1 Score: 53.1434 bits (126), Expect = 2.373e-9 Identity = 43/150 (28.67%), Postives = 72/150 (48.00%), Query Frame = 0 Query: 9 DQRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCDILVLPKNLLDGSACAEAVQETVDHFGR-LDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHL-----EKTKGNILYISSIAGN 152 + +V LITGA+SGIGA V++ L G+ + ARR + ++ E + ++ S D F L +V +NA G S + T +R +++NLI+P LTQ A+ + EK G I+Y++S++ + Sbjct: 3 ETKVALITGASSGIGAAVLRRLASKGFIVVG-CARRVELIEEIASE---FPSGRVFPYKCDITSESELKTMFDWVKDKFPETLRIVFANA-GCSIDKGLMEGDFTTWRKLMDVNLISPSALTQYAIKYWTDKSPEKGYGKIVYLNSLSAH 147
BLAST of short-chain dehydrogenase vs. L. salmonis genes
Match: EMLSAG00000002617 (supercontig:LSalAtl2s:LSalAtl2s1520:689:2941:1 gene:EMLSAG00000002617 transcript:EMLSAT00000002617 description:"maker-LSalAtl2s1520-augustus-gene-0.13") HSP 1 Score: 47.3654 bits (111), Expect = 2.047e-7 Identity = 34/139 (24.46%), Postives = 67/139 (48.20%), Query Frame = 0 Query: 10 QRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCD-----ILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHLEKTKGNI 143 Q++V+ITG + G+G V+KH + + Y IL R++ E K+L + + L+LP +L + ++ ++++I+NAG + R ++ F + + N ++ FLLT ++K N+ Sbjct: 39 QKIVVITGGSRGLGLSVIKHFIKLEY--FVILG-----CRKIEEAKKRLEELENDSAKYLILPLDLQSLESVKSFAEDVRTKASEIEILINNAG---IMFTPREETKDGFESQFQTNYLSHFLLTSLLFDKIQKRIVNV 167
BLAST of short-chain dehydrogenase vs. L. salmonis genes
Match: EMLSAG00000005423 (supercontig:LSalAtl2s:LSalAtl2s292:37284:38492:1 gene:EMLSAG00000005423 transcript:EMLSAT00000005423 description:"maker-LSalAtl2s292-augustus-gene-0.19") HSP 1 Score: 46.595 bits (109), Expect = 5.467e-7 Identity = 40/136 (29.41%), Postives = 66/136 (48.53%), Query Frame = 0 Query: 1 MSRVRIRMDQRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEE--CKKLADCDILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAAS------VRSKSVTD---FRNTLELNLIAP 125 + R + R+D +++L+TG SGIG V K+L G + I+A + K Q+ + K + IL + +L + E E + F ++D +I+NAG G + S V SK V F ++ N I+P Sbjct: 44 LCRSKKRLDGKIILLTGGXSGIGYEVAKNLSTRG--AILIMAAKNIKKLQIARDKIAKFSGNEKILAMKLDLSSFQSVIEFSTEFKEIFNKIDYIINNAGIGVNLGSSFLGPKVISKKVYTPDGFEVMMQTNYISP 177
BLAST of short-chain dehydrogenase vs. SwissProt
Match: gi|82202438|sp|Q6P7J1.1|DHI1A_XENLA (RecName: Full=Hydroxysteroid 11-beta-dehydrogenase 1-like protein A; AltName: Full=11-beta-hydroxysteroid dehydrogenase type 3-A; Short=11-DH3-A; Short=11-beta-HSD3-A; Flags: Precursor) HSP 1 Score: 67.781 bits (164), Expect = 4.600e-13 Identity = 40/139 (28.78%), Postives = 76/139 (54.68%), Query Frame = 0 Query: 13 VLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCDILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHLEKTKGNILYISSIAG 151 VLITG+++GIG + +G + + ARR +L++V EC KL + ++ + ++ QE V+ G LD ++ N GGS++ + ++ +N ++ LT AAL L++++G+I+ +SS++G Sbjct: 36 VLITGSSTGIGEQIAYEFARMG-AHIMVTARRLQRLQEVANECLKLGAASAHYVASDMGNLTSAQYVAQEAVNKLGGLDYLVLNHIGGSASFGFFKGEMDPVVGSIYINFLSYVQLTSAALKALQESQGSIVVMSSMSG 173
BLAST of short-chain dehydrogenase vs. SwissProt
Match: gi|60416400|sp|P0A170.1|NAHB_PSEU8 (RecName: Full=1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase; AltName: Full=Cis-naphthalene dihydrodiol dehydrogenase; AltName: Full=Dibenzothiophene dihydrodiol dehydrogenase) HSP 1 Score: 67.3958 bits (163), Expect = 5.026e-13 Identity = 46/145 (31.72%), Postives = 78/145 (53.79%), Query Frame = 0 Query: 9 DQRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCDILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVR---SKSVTDFRNTLELNLIAPFLLTQAALPHLEKTKGNILYISSIA 150 +Q+VV ITGA SGIG +V+ GY ++ L R E Q CK+ D + ++ ++ D + + +++T+D FG LD I+NAG S+ K + F ++N+ + F AALP L+KT G+++ +S++ Sbjct: 3 NQQVVSITGAGSGIGLELVRSFKSAGYY-VSALVRNE---EQEALLCKEFKDA-LEIVVGDVRDHATNEKLIKQTIDRFGHLDCFIANAGIWDYMLSIEEPWEKISSSFDEIFDINVKSYFSGISAALPELKKTNGSVVMTASVS 142
BLAST of short-chain dehydrogenase vs. SwissProt
Match: gi|81673350|sp|Q5HLD8.1|Y2049_STAEQ (RecName: Full=Uncharacterized oxidoreductase SERP2049 >gi|81842541|sp|Q8CN40.1|Y2036_STAES RecName: Full=Uncharacterized oxidoreductase SE_2036) HSP 1 Score: 67.0106 bits (162), Expect = 5.357e-13 Identity = 39/149 (26.17%), Postives = 87/149 (58.39%), Query Frame = 0 Query: 7 RMDQRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECK---KLADCDILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPH-LEKTKGNILYISSIAG 151 ++ ++V ++TGA+SGIG + K L G + ++ R E +L ++ ++ K+ D+ V K+ +D + ++ +DHFG +D+V+ N+ G S ++ + +V + +++N+ + QA LP+ L+++ G+I+ ++S++G Sbjct: 3 KVKEKVAVVTGASSGIGEAIAKKLSQQG-ASIVLVGRNEQRLNEIAQQLNTPAKVVSADVTV--KSNID-----DMLKAVIDHFGHIDIVV-NSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSG 142
BLAST of short-chain dehydrogenase vs. SwissProt
Match: gi|6831715|sp|Q9WYG0.1|Y325_THEMA (RecName: Full=Uncharacterized oxidoreductase TM_0325) HSP 1 Score: 65.4698 bits (158), Expect = 2.109e-12 Identity = 47/142 (33.10%), Postives = 74/142 (52.11%), Query Frame = 0 Query: 11 RVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCDILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHLEKTKGNILY-ISSIAG 151 +VVLITGA SGIG G K+AI E K ++ E K + + D + V++TV+ FGRLD++++NAG ++ S DF T+ +N+ PFLL++ A+ ++K G ++ +SS AG Sbjct: 6 KVVLITGAGSGIGKKAAVMFAERG-AKVAINDISEEKGKETVELIKSMGGEAAFIFGDVAKD---AEQIVKKTVETFGRLDILVNNAGI-VPYGNIEETSEEDFDKTMAVNVKGPFLLSKYAVEQMKKQGGGVIVNVSSEAG 142
BLAST of short-chain dehydrogenase vs. SwissProt
Match: gi|81889413|sp|Q5RJY4.1|DRS7B_RAT (RecName: Full=Dehydrogenase/reductase SDR family member 7B; AltName: Full=Short-chain dehydrogenase/reductase family 32C member 1) HSP 1 Score: 65.0846 bits (157), Expect = 5.083e-12 Identity = 52/161 (32.30%), Postives = 80/161 (49.69%), Query Frame = 0 Query: 2 SRVRIRMDQRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADC--------DILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDF-RNTLELNLIAPFLLTQAALPHL-EKTKGNILYISSIAGN 152 +R + + VV++TGA SG+G + + H K+ + R L + T E LAD V+ +L D A A A E + FG +D++I+NAG A S ++ D R +E+N P LT+A LP + E+ +G+I+ ISSI G Sbjct: 44 TRSKAYLRNAVVVVTGATSGLGKECAR-VFHAAGAKVVLCGRNVKALEEFTRE---LADSSSSQGQTHQPCVVTFDLADPGAIAPAAAEILQCFGYVDILINNAGISYRGAI--SDTIVDVDRKVMEINYFGPVALTKALLPSMVERKRGHIVAISSIQGK 198
BLAST of short-chain dehydrogenase vs. nr
Match: gi|1043409253|gb|OCA21887.1| (hypothetical protein XENTR_v900227932mg, partial [Xenopus tropicalis]) HSP 1 Score: 108.997 bits (271), Expect = 5.671e-27 Identity = 58/146 (39.73%), Postives = 93/146 (63.70%), Query Frame = 0 Query: 6 IRMDQRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCDILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHLEKTKGNILYISSIAG 151 I + +V L+TGA+SGIGAG +G R LA+ R E KL++ + C++ + L++P +L D + + V++TV HFGRLDV++ N+GG + +V + S+ DF + +N+ + F LT A+PHL +TKGNI+ +SS+ G Sbjct: 9 INLKDKVCLVTGASSGIGAGTALLFARLGAR-LALNGRNEEKLQETAQGCEQFSGMKPLLVPGDLTDEESVRKIVEQTVAHFGRLDVLV-NSGGILAMGTVENTSLQDFDRVMNVNVRSLFYLTHLAVPHLIQTKGNIVNVSSVNG 152
BLAST of short-chain dehydrogenase vs. nr
Match: gi|52345950|ref|NP_001005019.1| (MGC79752 protein [Xenopus tropicalis] >gi|50370270|gb|AAH76694.1| MGC79752 protein [Xenopus tropicalis] >gi|1270535225|gb|ATO95020.1| hypothetical protein, partial [synthetic construct]) HSP 1 Score: 108.612 bits (270), Expect = 4.251e-26 Identity = 58/147 (39.46%), Postives = 93/147 (63.27%), Query Frame = 0 Query: 6 IRMDQRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCDILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHLEKTKGNILYISSIAGN 152 I + +V L+TGA+SGIGAG +G R LA+ R E KL++ + C++ + L++P +L D + + V++TV HFGRLDV++ N+GG + +V + S+ DF + +N+ + F LT A+PHL +TKGNI+ +SS+ G Sbjct: 9 INLKDKVCLVTGASSGIGAGTALLFARLGAR-LALNGRNEEKLQETAQGCEQFSGMKPLLVPGDLTDEESVRKIVEQTVAHFGRLDVLV-NSGGILAMGTVENTSLQDFDRVMNVNVRSLFYLTHLAVPHLIQTKGNIVNVSSVNGQ 153
BLAST of short-chain dehydrogenase vs. nr
Match: gi|1325272695|ref|XP_023320977.1| (uncharacterized protein LOC111695772 [Eurytemora affinis]) HSP 1 Score: 107.842 bits (268), Expect = 6.807e-26 Identity = 57/144 (39.58%), Postives = 90/144 (62.50%), Query Frame = 0 Query: 8 MDQRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCDILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHLEKTKGNILYISSIAG 151 + ++VLITGA+SGIGAG HL +G KL+++AR KL Q+ E+C+ L +L+ P +L + C +AV ETV LDV++ N+ G + S+ + + + + + +N A F+LTQ +PHL KTKG I+++SS+ G Sbjct: 4 LQNKIVLITGASSGIGAGAALHLAGLG-AKLSLVARNTEKLEQIAEQCRSLGSPQVLICPHDLSIEAECVKAVAETVKKMNGLDVLV-NSAGILVSGSILTLTSEQYDHCMNINTRAAFILTQQCVPHLIKTKGTIVHVSSVTG 145
BLAST of short-chain dehydrogenase vs. nr
Match: gi|291241976|ref|XP_002740878.1| (PREDICTED: tropinone reductase 2-like [Saccoglossus kowalevskii]) HSP 1 Score: 107.842 bits (268), Expect = 8.674e-26 Identity = 58/144 (40.28%), Postives = 91/144 (63.19%), Query Frame = 0 Query: 8 MDQRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKK--LADCDILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHLEKTKGNILYISSI 149 + +V L+TGA+SGIGA + H +G LAI R +K+ V++EC+K L+ IL +P ++ C V+ TV HFG LD++++NAGGG ++ + S+ F ++ LN+ A F L++ A+PHL KTKGNI+ +SS+ Sbjct: 4 LQGKVALVTGASSGIGAAIAAHFASLGCY-LAIGGRDVTKMEAVSKECEKNGLSKDKILCVPGDITIDEVCVNIVESTVKHFGHLDILVNNAGGGFYRETIETVSMERFDHSFNLNVRALFHLSKLAVPHLIKTKGNIVNVSSM 146
BLAST of short-chain dehydrogenase vs. nr
Match: gi|148235578|ref|NP_001087742.1| (MGC79752 protein L homeolog [Xenopus laevis] >gi|51703932|gb|AAH81161.1| MGC84267 protein [Xenopus laevis]) HSP 1 Score: 107.457 bits (267), Expect = 1.216e-25 Identity = 59/147 (40.14%), Postives = 91/147 (61.90%), Query Frame = 0 Query: 6 IRMDQRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCDILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHLEKTKGNILYISSIAGN 152 I + +V L+TGA+SGIGAG +G R LA+ R E KL++ C++ + L++P +L D + ++ETV HFG+LDV++ N+GG + +V + S+ DF + +N+ A F LT A+PHL KTKGNI+ +SS+ G Sbjct: 14 INLKDKVCLVTGASSGIGAGTALLFARLGAR-LALNGRNEEKLQETALACEQYSGVKPLLVPGDLTDEECVRKIIEETVAHFGQLDVLV-NSGGILAMGTVENTSLQDFDRVMNVNVRAIFYLTHLAVPHLIKTKGNIINVSSVNGQ 158
BLAST of short-chain dehydrogenase vs. nr
Match: gi|968543743|ref|WP_058572266.1| (SDR family NAD(P)-dependent oxidoreductase [Haloferax sp. SB29] >gi|966694679|gb|KTG27197.1| short-chain dehydrogenase [Haloferax sp. SB29]) HSP 1 Score: 106.301 bits (264), Expect = 2.198e-25 Identity = 55/148 (37.16%), Postives = 89/148 (60.14%), Query Frame = 0 Query: 4 VRIRMDQRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCDILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHLEKTKGNILYISSIAG 151 +R + RV L+TGA++GIG L G + +LARRE +L + + + + LV+P ++ D A A +T+D FGRLDVV++NAG + + V S S T++R ++ N+ F +++AALPHL +T GN++++ S AG Sbjct: 1 MRDNLADRVALVTGASAGIGEATAHALADAG-ANVVLLARREDRLLGIAADLESDHGVETLVVPTDVRDEDAVEAAFDQTIDEFGRLDVVVNNAGL-ARGSDVESMSTTEYRQMMDTNVDGVFFVSRAALPHLRETAGNLVFVGSFAG 146
BLAST of short-chain dehydrogenase vs. nr
Match: gi|505058141|ref|WP_015245243.1| (KR domain-containing protein [Singulisphaera acidiphila] >gi|430014360|gb|AGA26074.1| short-chain dehydrogenase of unknown substrate specificity [Singulisphaera acidiphila DSM 18658]) HSP 1 Score: 107.457 bits (267), Expect = 2.404e-25 Identity = 61/150 (40.67%), Postives = 89/150 (59.33%), Query Frame = 0 Query: 10 QRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADC-----------DILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHLEKTKGNILYISS 148 +RVVL+TGA++GIGA + + L G+ L + ARRE +LRQ+ EE +KL + D+ ++P L D + V ETV FGRLDV+I+NAG G + TD R LE+N +AP +L++ ALPHL + +G I+ + S Sbjct: 6 KRVVLLTGASAGIGASIARELARQGF-DLVLTARREDRLRQLAEELRKLLETNPAREPGRGPIDVHIVPSALEDPTTPERLVAETVARFGRLDVLINNAGFGLPTLFADADP-TDVRRQLEVNFVAPLMLSRHALPHLLERRGMIINVGS 153
BLAST of short-chain dehydrogenase vs. nr
Match: gi|1050362506|gb|OCT64711.1| (hypothetical protein XELAEV_18045808mg [Xenopus laevis]) HSP 1 Score: 106.301 bits (264), Expect = 4.218e-25 Identity = 58/147 (39.46%), Postives = 90/147 (61.22%), Query Frame = 0 Query: 6 IRMDQRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCDILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHLEKTKGNILYISSIAGN 152 I + +V L+TGA+SGIG G +G R LA+ R E KL++ C++ + L++P +L D + ++ETV HFG+LDV++ N+GG + +V + S+ DF + +N+ A F LT A+PHL KTKGNI+ +SS+ G Sbjct: 14 INLKDKVCLVTGASSGIGGGTALLFARLGAR-LALNGRNEEKLQETALACEQYSGVKPLLVPGDLTDEECVRKIIEETVAHFGQLDVLV-NSGGILAMGTVENTSLQDFDRVMNVNVRAIFYLTHLAVPHLIKTKGNIINVSSVNGQ 158
BLAST of short-chain dehydrogenase vs. nr
Match: gi|1069389601|ref|XP_018089983.1| (PREDICTED: MGC84267 protein isoform X1 [Xenopus laevis]) HSP 1 Score: 106.301 bits (264), Expect = 4.263e-25 Identity = 58/147 (39.46%), Postives = 90/147 (61.22%), Query Frame = 0 Query: 6 IRMDQRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCDILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHLEKTKGNILYISSIAGN 152 I + +V L+TGA+SGIG G +G R LA+ R E KL++ C++ + L++P +L D + ++ETV HFG+LDV++ N+GG + +V + S+ DF + +N+ A F LT A+PHL KTKGNI+ +SS+ G Sbjct: 14 INLKDKVCLVTGASSGIGGGTALLFARLGAR-LALNGRNEEKLQETALACEQYSGVKPLLVPGDLTDEECVRKIIEETVAHFGQLDVLV-NSGGILAMGTVENTSLQDFDRVMNVNVRAIFYLTHLAVPHLIKTKGNIINVSSVNGQ 158
BLAST of short-chain dehydrogenase vs. nr
Match: gi|1149705780|ref|XP_020179003.1| (11-beta-hydroxysteroid dehydrogenase 1B-like [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 107.457 bits (267), Expect = 6.421e-25 Identity = 59/144 (40.97%), Postives = 85/144 (59.03%), Query Frame = 0 Query: 8 MDQRVVLITGANSGIGAGVVKHLVHVGYRKLAILARRESKLRQVTEECKKLADCDILVLPKNLLDGSACAEAVQETVDHFGRLDVVISNAGGGSSAASVRSKSVTDFRNTLELNLIAPFLLTQAALPHLEKTKGNILYISSIAG 151 + ++VVLITGA+SGIG + G LA+LARRE LRQV + +L D+++LP ++ D C VQ T+DH+GRLD ++ NAG S A VT++ L++N T AALPHL++T+G I+ +S G Sbjct: 45 LKRKVVLITGASSGIGEQLAYQYATKG-ACLALLARREWSLRQVADRAFELGAPDVIILPGDVADPDDCNRFVQATIDHYGRLDHLVCNAGIASVGAFQEIPDVTNYSPQLDVNFWGAVQSTFAALPHLKRTRGRIVVTASATG 187 The following BLAST results are available for this feature:
BLAST of short-chain dehydrogenase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 6
BLAST of short-chain dehydrogenase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of short-chain dehydrogenase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold422_size175911:8338..14109- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold422_size175911-snap-gene-0.35 ID=maker-scaffold422_size175911-snap-gene-0.35|Name=short-chain dehydrogenase|organism=Tigriopus kingsejongensis|type=gene|length=5772bp|location=Sequence derived from alignment at scaffold422_size175911:8338..14109- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'short-chain dehydrogenase' has the following synonyms
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