loc733259 protein, maker-scaffold430_size173499-snap-gene-0.33 (gene) Tigriopus kingsejongensis

Overview
Nameloc733259 protein
Unique Namemaker-scaffold430_size173499-snap-gene-0.33
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of loc733259 protein vs. L. salmonis genes
Match: EMLSAG00000008270 (supercontig:LSalAtl2s:LSalAtl2s4:1304083:1353771:-1 gene:EMLSAG00000008270 transcript:EMLSAT00000008270 description:"maker-LSalAtl2s4-augustus-gene-13.10")

HSP 1 Score: 173.711 bits (439), Expect = 5.553e-52
Identity = 79/175 (45.14%), Postives = 113/175 (64.57%), Query Frame = 0
Query:   62 LLSLNVREAIRVLRQKEHKARVSALVQRNADFYRRQRCCECVTMMSLLSVFTSFSLYVIFAYGFHVGQRLPFTLVQANHSSKIHQMEGENGELWCQTDQYWEWCRWVHYDQFCDFEWTSHSAGVETTTCDFPTGKVELIGDYESFQCGIRIHNLDTKDRGLWLCEVEKYYSGFSR 236
            ++S  +R+ +R LR+ EHK  V  L ++ A +Y RQR CEC+TM S +  FT FS Y++ +YGF+ G   PF L + N +++I   + EN    CQTD  WE+CRW H++ FCDFE TS +  ++  +CDFP  K    G+Y + +CG+++H  D  DRGLW CE+EK Y GFSR
Sbjct:   59 IMSATLRKTLRNLRRNEHKTLVKRLKKKKALYYSRQRFCECITMTSFIISFTIFSFYMVLSYGFYFGIPRPFELTE-NLTTRIVVNKNENVNFKCQTDHPWEYCRWTHHNSFCDFERTSKTK-IDQRSCDFPQNKASFWGNYSNNECGLQLHQADISDRGLWXCEMEKXYLGFSR 231          
BLAST of loc733259 protein vs. L. salmonis genes
Match: EMLSAG00000006322 (supercontig:LSalAtl2s:LSalAtl2s345:140275:141660:-1 gene:EMLSAG00000006322 transcript:EMLSAT00000006322 description:"maker-LSalAtl2s345-augustus-gene-1.9")

HSP 1 Score: 67.0106 bits (162), Expect = 2.285e-13
Identity = 39/123 (31.71%), Postives = 59/123 (47.97%), Query Frame = 0
Query:  111 VFTSFSLYVIFAYGFHVGQRLPFTLVQANHSSKIHQME-GENGELWCQTDQYWEWCRWVHYDQ--FCDFEWTSHSAGVETTTCDFPTGKVELIGDYESFQCGIRIHNLDTKDRGLWLCEVEKY 230
            +F S  +Y +    F V   +         SS+I +   GE   L C+ +QYWE+C W H  +   C+FEW   +  V    C     + +  GDY+ ++C ++I  L+ KD G W C VE Y
Sbjct:    3 LFISRLIYTLLFISFPVXGAIKI----VKDSSQIAKGNVGEAVVLKCRVNQYWEYCTWKHVSRGNSCNFEWKYSTGKVVRQQCPSLWSRAKFGGDYDKYECNLKIDVLEEKDFGQWTCIVEDY 121          
BLAST of loc733259 protein vs. nr
Match: gi|1325310328|ref|XP_023336768.1| (uncharacterized protein LOC111707838 isoform X1 [Eurytemora affinis])

HSP 1 Score: 105.916 bits (263), Expect = 3.014e-23
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 0
Query:  121 FAYGFHVGQRLPFTLVQANHSSKIHQMEGENGELWCQTDQYWEWCRWVHYDQFCDFEWTSHSAGVETTTCDFPTGKVELIGDYESFQCGIRIHNLDTKDRGLWLCEVEKYYSGFSR 236
             A+GF       FT+V    +      EG   +L CQTD  WEWCRW+H D++C++EW S S GV+ T C+     V+LIG+Y   QCG+R+  +D +  G WLCE+EKY+ GFSR
Sbjct:    1 MAHGFEYFHTANFTMVY--QTPYTWSKEGVQVDLMCQTDMPWEWCRWIHMDEYCEWEWISESEGVKLTGCNMV--DVDLIGEYNLHQCGVRVM-VDAEHEGEWLCEIEKYHPGFSR 111          
BLAST of loc733259 protein vs. nr
Match: gi|1325310330|ref|XP_023336770.1| (uncharacterized protein LOC111707838 isoform X2 [Eurytemora affinis])

HSP 1 Score: 103.219 bits (256), Expect = 2.343e-22
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 0
Query:  148 EGENGELWCQTDQYWEWCRWVHYDQFCDFEWTSHSAGVETTTCDFPTGKVELIGDYESFQCGIRIHNLDTKDRGLWLCEVEKYYSGFSR 236
            EG   +L CQTD  WEWCRW+H D++C++EW S S GV+ T C+     V+LIG+Y   QCG+R+  +D +  G WLCE+EKY+ GFSR
Sbjct:   12 EGVQVDLMCQTDMPWEWCRWIHMDEYCEWEWISESEGVKLTGCNMV--DVDLIGEYNLHQCGVRVM-VDAEHEGEWLCEIEKYHPGFSR 97          
BLAST of loc733259 protein vs. nr
Match: gi|1325326871|ref|XP_023345287.1| (uncharacterized protein LOC111714416 [Eurytemora affinis])

HSP 1 Score: 77.0258 bits (188), Expect = 7.531e-13
Identity = 39/132 (29.55%), Postives = 61/132 (46.21%), Query Frame = 0
Query:  105 MMSLLSVFTSFSLYVIFAYGFHVGQRLPFTLVQANHSSKIHQMEGENGELWCQTDQYWEWCRWVHYDQFCDFEWTSHSAGVETTTCDFPTGKVELIGDYESFQCGIRIHNLDTKDRGLWLCEVEKYYSGFSR 236
            M+ LL  F  F L             L  T+ + + +  I   +GE   L C  D ++EWC + H D+ CD+EW   +  +    CD    +    G Y+ ++CG+ I N   +D G W C++E+Y  G  R
Sbjct:    1 MIRLLIFFKIFGL------------SLALTVTKHSPADVITVKQGETFTLLCTVDTFYEWCTFRHEDKICDYEWKRAAWNLTVADCDAYADRASYQGRYDYYECGVEIRNAGPEDTGEWSCDLEEYIRGGER 120          
BLAST of loc733259 protein vs. nr
Match: gi|1325280005|ref|XP_023324663.1| (uncharacterized protein LOC111698541 [Eurytemora affinis])

HSP 1 Score: 75.485 bits (184), Expect = 2.401e-12
Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = 0
Query:  132 PFTLVQANHSSKIHQMEGENGELWCQTDQYWEWCRWVHYD-----QFCDFEWTSHSAGVETTTCDFPTG-KVELIGDYESFQCGIRIHNLDTKDRGLWLCEVEKY 230
             F +V   ++S + ++EGE  E+ C+++ +WE+C W H       + CDFEW   +  V+   C      +V + GDYE  +CG++I N+  +D G W CE+E+Y
Sbjct:   18 KFQIVDHKYNSGV-RIEGETLEMRCRSNNHWEYCTWRHITGSGGVKQCDFEWKRMTGKVQVMDCHSEVSHRVSVSGDYEKHECGLKIENITMEDSGTWECEMEEY 121          
BLAST of loc733259 protein vs. nr
Match: gi|1325269327|ref|XP_023349657.1| (uncharacterized protein LOC111718328 [Eurytemora affinis])

HSP 1 Score: 73.1738 bits (178), Expect = 1.396e-11
Identity = 39/123 (31.71%), Postives = 59/123 (47.97%), Query Frame = 0
Query:  115 FSLYVIFAYGFHVGQRLP-FTLVQANHSSKIHQMEGENGELWCQTDQYWEWCRWVHYDQFCDFEWTSHSAGVETTTCDFPTGKVELIGDYESFQCGIRIHNLDTKDRGLWLCEVEKYYSGFSR 236
             ++ ++   GF + +  P  +LV+ N S +          L C+ + Y+EWC + H    C+FEW      V TT C     ++   GDY  F+C I+I     +D G W C +EKY  G SR
Sbjct:   14 LTIQLLHISGFELQESGPTLSLVRVNSSFR----------LSCRANSYYEWCTFYHTVSKCEFEWKRKPWNVTTTDCKDFGDRISFQGDYNKFECAIKIETSVPEDTGEWSCVLEKYVRGKSR 126          
BLAST of loc733259 protein vs. nr
Match: gi|1325311990|ref|XP_023337625.1| (uncharacterized protein LOC111708473 isoform X1 [Eurytemora affinis])

HSP 1 Score: 67.3958 bits (163), Expect = 1.698e-9
Identity = 32/120 (26.67%), Postives = 57/120 (47.50%), Query Frame = 0
Query:  117 LYVIFAYGFHVGQRLPFTLVQANHSSKIHQMEGENGELWCQTDQYWEWCRWVH-YDQFCDFEWTSHSAGVETTTCDFPTGKVELIGDYESFQCGIRIHNLDTKDRGLWLCEVEKYYSGFS 235
            L +   YG  +  ++    V+    + +    G    + C++  ++E+C +++   + CDFEW      +    C     KV+ IG Y  F+CGI I  +   D G+W C++E+Y  G S
Sbjct:    3 LIIFIFYGGAMFSKVNGFQVEGVGEALVQGALGAAVNMTCRSSSFYEYCTFINPIGETCDFEWRRKQWNITMRKCSTLNQKVKFIGSYTEFECGIEISEISRADLGIWKCQMEQYVFGGS 122          
BLAST of loc733259 protein vs. nr
Match: gi|1325280738|ref|XP_023325033.1| (cell wall integrity and stress response component 1-like isoform X1 [Eurytemora affinis])

HSP 1 Score: 62.003 bits (149), Expect = 1.126e-7
Identity = 34/99 (34.34%), Postives = 50/99 (50.51%), Query Frame = 0
Query:  133 FTLVQANHSSKIHQMEGENGELWCQTDQYWEWCRWVH-YDQFCDFEWTSHSAGVETTTCDFPTGKVELIGDYESFQCGIRIHNLDTKDRGLWLCEVEKY 230
            FT+++ +    + Q  GE   L C TD +WE+C++       CDFEW     GV    C     +VE  G Y   +CGI I +   +D G+W C +E+Y
Sbjct:   21 FTMLKIDPGMVVAQ-PGERISLLCGTDGHWEYCKFYSPQGTDCDFEWKRAFNGVLKQECGL-GDRVEFYGRYNDKECGITIKDPKPEDTGVWTCHMEEY 117          
BLAST of loc733259 protein vs. nr
Match: gi|1325280740|ref|XP_023325034.1| (cell wall integrity and stress response component 1-like isoform X2 [Eurytemora affinis])

HSP 1 Score: 62.003 bits (149), Expect = 1.154e-7
Identity = 34/99 (34.34%), Postives = 50/99 (50.51%), Query Frame = 0
Query:  133 FTLVQANHSSKIHQMEGENGELWCQTDQYWEWCRWVH-YDQFCDFEWTSHSAGVETTTCDFPTGKVELIGDYESFQCGIRIHNLDTKDRGLWLCEVEKY 230
            FT+++ +    + Q  GE   L C TD +WE+C++       CDFEW     GV    C     +VE  G Y   +CGI I +   +D G+W C +E+Y
Sbjct:   21 FTMLKIDPGMVVAQ-PGERISLLCGTDGHWEYCKFYSPQGTDCDFEWKRAFNGVLKQECGL-GDRVEFYGRYNDKECGITIKDPKPEDTGVWTCHMEEY 117          
The following BLAST results are available for this feature:
BLAST of loc733259 protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAG000000082705.553e-5245.14supercontig:LSalAtl2s:LSalAtl2s4:1304083:1353771:-... [more]
EMLSAG000000063222.285e-1331.71supercontig:LSalAtl2s:LSalAtl2s345:140275:141660:-... [more]
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BLAST of loc733259 protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of loc733259 protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 8
Match NameE-valueIdentityDescription
gi|1325310328|ref|XP_023336768.1|3.014e-2344.83uncharacterized protein LOC111707838 isoform X1 [E... [more]
gi|1325310330|ref|XP_023336770.1|2.343e-2251.69uncharacterized protein LOC111707838 isoform X2 [E... [more]
gi|1325326871|ref|XP_023345287.1|7.531e-1329.55uncharacterized protein LOC111714416 [Eurytemora a... [more]
gi|1325280005|ref|XP_023324663.1|2.401e-1234.29uncharacterized protein LOC111698541 [Eurytemora a... [more]
gi|1325269327|ref|XP_023349657.1|1.396e-1131.71uncharacterized protein LOC111718328 [Eurytemora a... [more]
gi|1325311990|ref|XP_023337625.1|1.698e-926.67uncharacterized protein LOC111708473 isoform X1 [E... [more]
gi|1325280738|ref|XP_023325033.1|1.126e-734.34cell wall integrity and stress response component ... [more]
gi|1325280740|ref|XP_023325034.1|1.154e-734.34cell wall integrity and stress response component ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold430_size173499supercontigscaffold430_size173499:32434..33334 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold430_size173499-snap-gene-0.33-mRNA-1maker-scaffold430_size173499-snap-gene-0.33-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold430_size173499:32434..33334+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold430_size173499-snap-gene-0.33 ID=maker-scaffold430_size173499-snap-gene-0.33|Name=loc733259 protein|organism=Tigriopus kingsejongensis|type=gene|length=901bp|location=Sequence derived from alignment at scaffold430_size173499:32434..33334+ (Tigriopus kingsejongensis)
CTCCGCCACTCCTGTTCCAAGGTCAGAGCTCAGAACTGAGTGGGAAAGAG CGAGGGAAAACAACCCAACCTAATCACCACCCAGCGCAGAACAAACAAGG ACGTGGCTATAATGAATTGGAACACGATTGATCCCTGAATTCGCCCAACA CCCTCCGGTGGTGCTCGCCATGGGCGAACCGGAGCGAGCAAGTGAGAAGC AATGCCTCACGGTCCCCGACATGGAGGGCAATGGACCGCCCCTCTCCGGA GGAGGGGGGGATGGACCGCCCCCAGCCTCCAGACTGGCGCACCGTCGGTG CTCGGCCCGCCTCCTCAGCCTCAACGTGCGCGAAGCCATTCGCGTGCTGC GTCAAAAGGAACACAAAGCCCGAGTCTCGGCTTTGGTTCAGCGAAATGCG GATTTCTATCGCCGTCAGCGATGTTGCGAGTGTGTCACCATGATGAGCCT CCTCAGCGTGTTCACCTCCTTCTCGCTCTATGTCATATTTGCGTATGGTT TTCACGTTGGACAACGTCTTCCATTCACTCTGGTTCAAGCCAACCACTCT TCCAAGATCCACCAAATGGAGGTAAGATCGCGAAACTCTCGGGAGCTCTC CGGATTAACCATCCATGTCCACGTTTTTGTGTGCCAGGGCGAAAATGGCG AGCTTTGGTGCCAAACCGATCAGTATTGGGAGTGGTGTCGGTGGGTTCAC TACGACCAGTTTTGCGACTTTGAATGGACCTCCCACTCGGCAGGCGTCGA AACCACGACCTGCGACTTCCCAACGGGCAAGGTTGAACTCATCGGAGACT ATGAGAGCTTCCAATGTGGCATCCGAATCCACAATCTCGACACCAAAGAT CGGGGTTTATGGTTGTGCGAAGTGGAAAAATACTACTCCGGATTCTCCAG G
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Synonyms
The feature 'loc733259 protein' has the following synonyms
Synonym
Tk06986
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