vacuolar protein sorting, maker-scaffold430_size173499-snap-gene-0.43 (gene) Tigriopus kingsejongensis

Overview
Namevacuolar protein sorting
Unique Namemaker-scaffold430_size173499-snap-gene-0.43
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of vacuolar protein sorting vs. L. salmonis genes
Match: EMLSAG00000000628 (supercontig:LSalAtl2s:LSalAtl2s109:771638:773491:1 gene:EMLSAG00000000628 transcript:EMLSAT00000000628 description:"snap_masked-LSalAtl2s109-processed-gene-8.12")

HSP 1 Score: 53.1434 bits (126), Expect = 1.097e-8
Identity = 27/53 (50.94%), Postives = 31/53 (58.49%), Query Frame = 0 
Query:  172 NIIRLFQATGMDHMNMFPYVRAALIGHATRNDVKSAGGGSFNRRGNSCAQMYR 224
            N+   F ATG+D MN FPYVRA LIG A+             R GNSCA+MYR
Sbjct:  110 NLFSNFIATGLDSMNAFPYVRAGLIGQASD---------PLERGGNSCARMYR 153
The following BLAST results are available for this feature:
BLAST of vacuolar protein sorting vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000006281.097e-850.94supercontig:LSalAtl2s:LSalAtl2s109:771638:773491:1... [more]
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BLAST of vacuolar protein sorting vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of vacuolar protein sorting vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold430_size173499supercontigscaffold430_size173499:159010..159870 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold430_size173499-snap-gene-0.43-mRNA-1maker-scaffold430_size173499-snap-gene-0.43-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold430_size173499:159010..159870+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold430_size173499-snap-gene-0.43 ID=maker-scaffold430_size173499-snap-gene-0.43|Name=vacuolar protein sorting|organism=Tigriopus kingsejongensis|type=gene|length=861bp|location=Sequence derived from alignment at scaffold430_size173499:159010..159870+ (Tigriopus kingsejongensis)
GAAGGATCCGAGGGTCGGCAGACAGGCAGGGACTGAGATGAATGATCAGG
TCAGTCGATCGTCACTCGATCGCAGTGGAATCCTTTAAACTGCCATTGCA
TCCCGCCATTGAAAAACACATTGCAACATGAAGTGTCAACTATTTTGGCT
CCATTGGGCCTTAATCCAATTGAGTAGTAGTGTGCCAGTGAAGAGGTCGG
CCGAGGATCCGGCCGTGAGATCCGCTCGACAACTGGTAGATTCGGCCAAT
GACGCGTACGTATACAAAGACTTAAAGAGACCTGGCCAATTGTCATACTC
CATGTCCTATTTTCCAGTGTGGTGGTCCAAGCATCCGACGACAGCGGGTC
CATCGTTTCCCCGGATGGTCCTGGACCCTCGATTCTCGGCTCACTTGATA
ACATCTTCGGATCCGTGAAAGATTTTGACCAATATCGCTGTCTGGAGAAG
ATGCTCTGCGAATACATGCAAGAGGACGGGGATGCCGTCTCCGAGCTCAT
TGGCCGACCCTTGGCTGGCTTCCAAAATCCTGCGTCCACGGTCCAAGACA
ATCGATTCACGCCCAACTCCAATTTTGGGCCTCAAACCGGGTCGCGACCT
CAACCGGCCTCATTGGCCTCCACGGGGGGCGGAGGCTTGCTGAGTAGCTT
GGGCGGCCTCTTACTTGGCCGCAAAAAGCGGCAAACGAGCAACACCCAGG
GGAACATCATCCGATTGTTCCAAGCGACCGGCATGGACCACATGAACATG
TTCCCCTATGTCCGAGCAGCTCTGATTGGACACGCCACTCGGAACGATGT
CAAGTCGGCGGGTGGTGGGAGCTTCAACCGACGTGGCAACTCTTGCGCCC
AAATGTATCGC
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Synonyms
The feature 'vacuolar protein sorting' has the following synonyms
Synonym
Tk06989
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