nadh dehydrogenase, maker-scaffold44_size478958-snap-gene-1.17 (gene) Tigriopus kingsejongensis

Overview
Namenadh dehydrogenase
Unique Namemaker-scaffold44_size478958-snap-gene-1.17
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of nadh dehydrogenase vs. SwissProt
Match: gi|82186892|sp|Q6PBH5.1|NDUA4_DANRE (RecName: Full=Cytochrome c oxidase subunit NDUFA4)

HSP 1 Score: 46.595 bits (109), Expect = 7.935e-7
Identity = 27/77 (35.06%), Postives = 40/77 (51.95%), Query Frame = 0
Query:   43 KSFLHHKALWPLAAIMGGTMIFAVAYAFRLATRSTDVNWSK--TEEPFNAYN-NKQFKFFNPAGHDYSKMNNEIPDY 116
            K    H AL PL   +GG    ++ Y  RLA ++ D +W +    EP+N    N Q+K F+    DYSK+  + PD+
Sbjct:    7 KQLKSHPALIPLFIFIGGGATMSMLYLGRLALKNPDCSWDRKNNPEPWNKLGPNDQYKLFS-VNMDYSKLKKDRPDF 82          
BLAST of nadh dehydrogenase vs. SwissProt
Match: gi|115502279|sp|Q0MQ98.1|NDUA4_GORGO (RecName: Full=Cytochrome c oxidase subunit NDUFA4)

HSP 1 Score: 46.595 bits (109), Expect = 9.015e-7
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 0
Query:   48 HKALWPLAAIMGGTMIFAVAYAFRLATRSTDVNWSKTE-EPFNAYN-NKQFKFFNPAGHDYSKMNNEIPDY 116
            H +L PL   +G     A  Y  RLA  + DV W K++ EP+N    N Q+KF++    DYSK+  E PD+
Sbjct:   12 HPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDKSKPEPWNKLGPNDQYKFYS-VNVDYSKLKKERPDF 81          
BLAST of nadh dehydrogenase vs. nr
Match: gi|961376908|gb|ALS05198.1| (NADH dehydrogenase [Tortanus dextrilobatus])

HSP 1 Score: 102.064 bits (253), Expect = 1.107e-25
Identity = 57/115 (49.57%), Postives = 73/115 (63.48%), Query Frame = 0
Query:    7 MRLSQYLNGFPKKGTYWEGEGGRGEMN-VRLPQGLTKKSFLHHKALWPLAAIMGGTMIFAVAYAFRLATRSTDVNWSKTEE---PFNAYNNKQFKFFNPAGHDYSKMNNEIPDYK 117
            M +S+ LN       Y  G+GGR   N V   QGLT KS  HH AL PL AI+G  MIF  +Y FRLAT++TD+NWSK +    P + Y N+QF+F NP+G DYSKM++  P Y+
Sbjct:    1 MFISRILNAVDHP--YITGKGGRKANNGVGSMQGLTIKSLKHHVALQPLFAIIGAGMIFVGSYVFRLATKTTDINWSKDKNPAGPMSYYENRQFQFLNPSGADYSKMSDVRPKYE 113          
BLAST of nadh dehydrogenase vs. nr
Match: gi|961375394|gb|ALS04441.1| (NADH dehydrogenase [Acartia pacifica] >gi|961375396|gb|ALS04442.1| NADH dehydrogenase [Acartia pacifica] >gi|961375398|gb|ALS04443.1| NADH dehydrogenase [Acartia pacifica] >gi|961375400|gb|ALS04444.1| NADH dehydrogenase [Acartia pacifica])

HSP 1 Score: 92.4337 bits (228), Expect = 5.970e-22
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 0
Query:   22 YWEGEGGRGEMNVRLPQGLTKKSFLHHKALWPLAAIMGGTMIFAVAYAFRLATRSTDVNWSKTEE---PFNAYNNKQFKFFNPAGHDYSKMNNEIPDYK 117
            Y  G GGR   N R+ QGLT +SF HHKAL PL A++G   +  +AY  RLA ++TDVNW K ++   P+N Y+ KQFK  NPAG DYS+   E P ++
Sbjct:   14 YMYGPGGRFANNRRM-QGLTWQSFKHHKALQPLFAVIGTGCVGVLAYLVRLAVKTTDVNWVKNKDPAYPYNYYDGKQFKLLNPAGVDYSQYGKERPRFE 111          
BLAST of nadh dehydrogenase vs. nr
Match: gi|1325280090|ref|XP_023324705.1| (cytochrome c oxidase subunit NDUFA4-like [Eurytemora affinis])

HSP 1 Score: 90.1225 bits (222), Expect = 5.395e-21
Identity = 49/100 (49.00%), Postives = 61/100 (61.00%), Query Frame = 0
Query:   22 YWEGEGGRGEMNVRLP-QGLTKKSFLHHKALWPLAAIMGGTMIFAVAYAFRLATRSTDVNWSKTEEPFNA---YNNKQFKFFNPAGHDYSKMNNEIPDYK 117
            Y  G GGR   N +   QGLT KS  HH AL PL AI+G   IF  AY +RLA ++TD+NW K + P N    Y+ KQFKF NP+G DYSK   + P ++
Sbjct:   14 YITGPGGRKANNGKGSMQGLTLKSLKHHVALQPLFAIIGAGCIFVGAYLYRLAAKTTDINWRKEKNPANTYGYYDGKQFKFMNPSGIDYSKYGQDRPKFE 113          
BLAST of nadh dehydrogenase vs. nr
Match: gi|1325326081|ref|XP_023344889.1| (uncharacterized protein LOC111714087 isoform X1 [Eurytemora affinis] >gi|1325326083|ref|XP_023344890.1| uncharacterized protein LOC111714087 isoform X1 [Eurytemora affinis])

HSP 1 Score: 87.0409 bits (214), Expect = 8.072e-20
Identity = 48/101 (47.52%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   20 GTYWEGEGGRGEMNVRLPQGLTKKSFLHHKALWPLAAIMGGTMIFAVAYAFRLATRSTDVNWSKTEE---PFNAYNNKQFKFFNPAGHDYSKMNNEIPDYK 117
            G Y EG+GGR   N    QG+T  S  HH AL PL  IMG  +    A   R AT++TDVNW K +E     N Y  KQFK  NP G D +K  + IPDYK
Sbjct:   12 GGYLEGKGGRKMNNGTRMQGMTLASLRHHVALQPLFIIMGAGVTMVTAMCIRTATKTTDVNWRKIKEEDYAVNHYKAKQFKLLNPTGADLAK-PSPIPDYK 111          
BLAST of nadh dehydrogenase vs. nr
Match: gi|1325324108|ref|XP_023343897.1| (cytochrome c oxidase subunit NDUFA4-like [Eurytemora affinis])

HSP 1 Score: 84.7297 bits (208), Expect = 7.031e-19
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 0
Query:    5 HIMRLSQYLNGFPKKGTYWEGEGGRGEMNVRLPQGLTKKSFLHHKALWPLAAIMGGTMIFAVAYAFRLATRSTDVNWSKTEEPFNA---YNNKQFKFFNPAGHDYSKMNNEIPDY 116
            HI R  +   G+   GT+   +GGR + N  +PQGLT K+   H  L PL  I+ G M+   +YA R A  +TDVNW K++ P++    Y+ KQ+KF NP+G DY +   E P +
Sbjct:    2 HITRCLRTNPGYIY-GTFKSSKGGRLQNN-SIPQGLTVKTLKRHYELQPLFGILAGAMVLVASYAIRAAVYATDVNWRKSKTPWDTYGYYDGKQYKFLNPSGIDYKEYGKERPRF 114          
BLAST of nadh dehydrogenase vs. nr
Match: gi|907696855|ref|XP_013109088.1| (PREDICTED: cytochrome c oxidase subunit NDUFA4 [Stomoxys calcitrans])

HSP 1 Score: 70.0922 bits (170), Expect = 1.659e-13
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 0
Query:   38 QGLTKKSFLHHKALWPLAAIMGGTMIFAVAYAFRLATRSTDVNWSKTE--EPFNAYNNKQFKFFNPAGHDYSKMNNEIPDYK 117
            QGL  +S   + AL PL   +G   + AV Y FRLATR+ DV W+++   EP+  Y NKQ+KF++P   DYSK  +  PDY+
Sbjct:    2 QGLGLQSIKKNPALIPLYVCVGAGALGAVYYMFRLATRNPDVTWNRSSNPEPWQEYKNKQYKFYSPI-RDYSKTKSPAPDYE 82          
BLAST of nadh dehydrogenase vs. nr
Match: gi|1339062873|ref|XP_023720106.1| (cytochrome c oxidase subunit NDUFA4 [Cryptotermes secundus] >gi|1330887438|gb|PNF20751.1| Cytochrome c oxidase subunit NDUFA4 [Cryptotermes secundus])

HSP 1 Score: 67.781 bits (164), Expect = 1.499e-12
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 0
Query:   38 QGLTKKSFLHHKALWPLAAIMGGTMIFAVAYAFRLATRSTDVNWSKTE--EPFNAYNNKQFKFFNPAGHDYSKMNNEIPDY 116
            +GL+  S   H AL PL A +G     A+ Y  RLA RS +V+W+K    EP+N Y+NKQ KF++P   DYSK+ +  P Y
Sbjct:    2 KGLSLSSLKSHPALIPLYACVGLGCCGALLYTLRLAVRSPEVSWNKKSNPEPWNEYSNKQHKFYSPV-RDYSKIESPAPKY 81          
BLAST of nadh dehydrogenase vs. nr
Match: gi|1321329692|ref|XP_023307723.1| (cytochrome c oxidase subunit NDUFA4 [Lucilia cuprina] >gi|906465793|gb|KNC27373.1| hypothetical protein FF38_01120 [Lucilia cuprina])

HSP 1 Score: 67.3958 bits (163), Expect = 1.974e-12
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 0
Query:   38 QGLTKKSFLHHKALWPLAAIMGGTMIFAVAYAFRLATRSTDVNWSKTE--EPFNAYNNKQFKFFNPAGHDYSKMNNEIPDYKK 118
            QGL  +S   + AL PL   +G     AV Y FRLATR+ DV W+++   EP+  Y +KQ+KF++P   DYSK+ +  P+Y++
Sbjct:    2 QGLGLQSIKKNPALIPLYVCVGAGACAAVFYIFRLATRNPDVTWNRSSNPEPWQEYKDKQYKFYSPI-RDYSKVKSPAPNYEE 83          
BLAST of nadh dehydrogenase vs. nr
Match: gi|512908093|ref|XP_004926598.1| (cytochrome c oxidase subunit NDUFA4 [Bombyx mori])

HSP 1 Score: 67.0106 bits (162), Expect = 2.357e-12
Identity = 38/81 (46.91%), Postives = 48/81 (59.26%), Query Frame = 0
Query:   38 QGLTKKSFLHHKALWPLAAIMGGTMIFAVAYAFRLATRSTDVNWSK--TEEPFNAYNNKQFKFFNPAGHDYSKMNNEIPDY 116
            QGL+  S   HKAL PL   +G     AV Y  RLA R+ DV+W+K    EP+ AY NKQ+KF++P   DYSK  +  P Y
Sbjct:    2 QGLSLSSLKKHKALIPLYVCVGIGCGGAVFYTLRLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPI-RDYSKEESPAPKY 81          
BLAST of nadh dehydrogenase vs. nr
Match: gi|1344767634|ref|XP_023944399.1| (cytochrome c oxidase subunit NDUFA4 [Bicyclus anynana])

HSP 1 Score: 67.0106 bits (162), Expect = 2.383e-12
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 0
Query:   38 QGLTKKSFLHHKALWPLAAIMGGTMIFAVAYAFRLATRSTDVNWSK--TEEPFNAYNNKQFKFFNPAGHDYSKMNNEIPDY 116
            +GLT KS   HKAL PL   +G     AV Y  RLATR+ DV+W+K    EP+  Y +KQ+KF++P   DYSK  +  P +
Sbjct:    2 EGLTIKSLKKHKALIPLYVCVGLGCGMAVLYTLRLATRNPDVSWNKRTNPEPWQEYKDKQYKFYSP-NIDYSKTPSPAPKF 81          
The following BLAST results are available for this feature:
BLAST of nadh dehydrogenase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of nadh dehydrogenase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
gi|82186892|sp|Q6PBH5.1|NDUA4_DANRE7.935e-735.06RecName: Full=Cytochrome c oxidase subunit NDUFA4[more]
gi|115502279|sp|Q0MQ98.1|NDUA4_GORGO9.015e-739.44RecName: Full=Cytochrome c oxidase subunit NDUFA4[more]
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BLAST of nadh dehydrogenase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|961376908|gb|ALS05198.1|1.107e-2549.57NADH dehydrogenase [Tortanus dextrilobatus][more]
gi|961375394|gb|ALS04441.1|5.970e-2249.49NADH dehydrogenase [Acartia pacifica] >gi|96137539... [more]
gi|1325280090|ref|XP_023324705.1|5.395e-2149.00cytochrome c oxidase subunit NDUFA4-like [Eurytemo... [more]
gi|1325326081|ref|XP_023344889.1|8.072e-2047.52uncharacterized protein LOC111714087 isoform X1 [E... [more]
gi|1325324108|ref|XP_023343897.1|7.031e-1940.00cytochrome c oxidase subunit NDUFA4-like [Eurytemo... [more]
gi|907696855|ref|XP_013109088.1|1.659e-1345.12PREDICTED: cytochrome c oxidase subunit NDUFA4 [St... [more]
gi|1339062873|ref|XP_023720106.1|1.499e-1244.44cytochrome c oxidase subunit NDUFA4 [Cryptotermes ... [more]
gi|1321329692|ref|XP_023307723.1|1.974e-1242.17cytochrome c oxidase subunit NDUFA4 [Lucilia cupri... [more]
gi|512908093|ref|XP_004926598.1|2.357e-1246.91cytochrome c oxidase subunit NDUFA4 [Bombyx mori][more]
gi|1344767634|ref|XP_023944399.1|2.383e-1245.68cytochrome c oxidase subunit NDUFA4 [Bicyclus anyn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold44_size478958supercontigscaffold44_size478958:171995..173403 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold44_size478958-snap-gene-1.17-mRNA-1maker-scaffold44_size478958-snap-gene-1.17-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold44_size478958:171995..173403-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold44_size478958-snap-gene-1.17 ID=maker-scaffold44_size478958-snap-gene-1.17|Name=nadh dehydrogenase|organism=Tigriopus kingsejongensis|type=gene|length=1409bp|location=Sequence derived from alignment at scaffold44_size478958:171995..173403- (Tigriopus kingsejongensis)
CGAGCCTTTCTCTTAGCCGTCACCCTGAATCTCATCCTCCATAGTTGTTC AGCTGACTTCACCAAATCTGATCCTGATTTGTTCACTCCGAAGTTGGTCG AGGATTGTGCCTGATTGTTTCCAGCCCACATCATGAGATTGAGCCAATAT CTGAATGGTTTCCCCAAGAAGGGCACCTACTGGGAAGGTGAAGGTGGACG TGGTGAGATGAATGTCAGGCTGCCCCAGGTAAGTTCATACCTCAGTCGCC AATCTGGCAGAGACTTTCTTCCCCTGTTCCACCCAATGCTAAATTGGACC CGAATTTGTAGTCCCTGATTGGATGACACGACCAAATATTGGTACGTTCA CGTGGCTGTCTGGGATGTTTTTATGAACCCTATTTACTACCTGGGCCGGG ATCCACAGGGTGGCACAAAAGTATCGCAATGAATTGATGCGGGAGAAAAC GTATTGGTGTATTATTATACTTGTATTCTGAAGCGCCTTGACTAGGATTT TTCCTAATTAGGTGGTTTAAATCAATGAGGGGGTTATTTACGGCTTGGTG ATATATTTATGCCATGTTTCTCATGTTTCAAGCCGTTAAATTTGGCTAAA ATGTATCGTAAATGTGCTAAAAATAAAATTAAGGCACTTGGGTACATAGG CTAAACAAGGCCAATGCCTAAATAAGCTTTGTACAATCTGAAAGTAATAA TGGACACCTAATACAAAAAATAAAATTAAGGCACTTGGGTATATAGGCTA AACAAGGCCAATGCCTAAATAAGCTTTGTACAATCTGAAAGTAATAATGG ACACCTAATACATGGAGGTGCTTGATGCACACTTCCTGCGAAGAAATCTC ATCCATGTGGTTTCCAGCTCCTAGAAATTGGCCCAAGAAATACTGCTTTG GCGATGAGCCGTTTGATATTCGATATCGTTTGGCATTAATGATTGTCTTC TTTTTTTTTATCCAACAGGGTCTGACGAAGAAAAGCTTCTTGCACCACAA AGCCTTGTGGCCTTTGGCGGCCATCATGGGCGGCACCATGATTTTCGCGG TAGCTTACGCCTTCCGATTGGCCACTCGCAGCACTGACGTGAATTGGAGC AAGACGGAGGAGCCCTTTAACGCCTACAACAACAAGCAATTCAAATTCTT TAACCCCGCCGGGCACGACTACTCGAAGATGAACAACGAGATCCCCGATT ACAAGAAGTGATTTCTGCCTCAACTGCGACAATTCCCCGCGGTGCAGATC AGCCCATGGTAGTTCTGAAATACAAGCTGATTTAGATGAAGTGGGACTTC CAACCTTTTGTCTGCTCCAAAAGAGCTCAATTCTTTCATCAGTGATTGTT CATAAAAGTCTGGCTTCATTTGACACATCCTGTGTAAATATACTCCCACT TTAGTTGGA
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Synonyms
The feature 'nadh dehydrogenase' has the following synonyms
Synonym
Tk06923
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