gaba-gated ion channel grd isoform x2, maker-scaffold456_size166325-snap-gene-0.27 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000006968 (supercontig:LSalAtl2s:LSalAtl2s396:160743:177530:1 gene:EMLSAG00000006968 transcript:EMLSAT00000006968 description:"maker-LSalAtl2s396-augustus-gene-1.5") HSP 1 Score: 244.202 bits (622), Expect = 4.138e-71 Identity = 123/235 (52.34%), Postives = 156/235 (66.38%), Query Frame = 0 Query: 1037 MDCYFRQSWVDRRLSFSGRKN---------LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWT-AGRGVNIASDMKLSQFDLISTP---------TGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVA 1252 MDCYFRQ W RLSF+G KN L+L+++ML KIWKPDTY +NG SY+HTIT PNK +R+ +G + YS RLTIKA C M L FPMD Q CPL +GS+ YTI+ V Y+W + V +KLSQFD+I+T T + T G S L V LQRH G F+IQ+Y PC L+VV+SWV FWLNREATSDR+ LG+TTVLT++ + L++RTDLP++ Sbjct: 1 MDCYFRQYWRXERLSFTGLKNNTHHLKIDQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLKSFPMDWQSCPLVLGSYAYTIDQVYYRWQHSSNAVAYEGKLKLSQFDIITTAYRSLNFSRNTDDRYTLPLVGGFSVLQVVIALQRHTGYFLIQIYLPCTLIVVLSWVGFWLNREATSDRVGLGITTVLTLSTIALDSRTDLPKMG 235
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000004091 (supercontig:LSalAtl2s:LSalAtl2s217:408116:410199:1 gene:EMLSAG00000004091 transcript:EMLSAT00000004091 description:"maker-LSalAtl2s217-augustus-gene-4.34") HSP 1 Score: 222.246 bits (565), Expect = 1.614e-62 Identity = 114/254 (44.88%), Postives = 163/254 (64.17%), Query Frame = 0 Query: 1034 SYSMDCYFRQSWVDRRLSF--SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGN----STTFLNKGQH---STLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSD----RISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 ++SMDCYFRQSWVD RL + SG + LAL+ L KIW PDT+I NG+KS+LH IT PN+F+R+ P G+V YSQRLTI A+C M+L FP D Q CPL++GSFG++ D+IYQW + V+ + + L+QF LI+ + N S KG + S+ ++ F +R G F++Q+Y P L+V SWV+FWL + R LG +VL++ +G + D P+V YATALD F+ + F ++FA + + Sbjct: 114 AFSMDCYFRQSWVDERLKYNTSGVEVLALNWAFLAKIWVPDTFIINGKKSFLHKITVPNRFVRVSPTGKVSYSQRLTILANCIMNLKKFPFDTQICPLKLGSFGHSNKDLIYQWKKPKAVSF-NKLGLAQFHLINYSSYNIIEPSLRLTEKGNYRNDSSSVMEFVFERQSGYFLLQIYTPLTLIVFCSWVAFWLVKTEKGGEXPARTXLGANSVLSIVNIGFTGK-DRPKVGYATALDVFIILCFFTVFAALVE 365
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000004092 (supercontig:LSalAtl2s:LSalAtl2s217:422807:437258:1 gene:EMLSAG00000004092 transcript:EMLSAT00000004092 description:"augustus_masked-LSalAtl2s217-processed-gene-4.1") HSP 1 Score: 213.772 bits (543), Expect = 1.309e-59 Identity = 119/320 (37.19%), Postives = 181/320 (56.56%), Query Frame = 0 Query: 998 SFVPSIMTAILSINDFDL------------VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRK--NLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNK--GQHSTLIVGFH--LQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSD----RISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSE 1295 S V + A+LS N +D V F + + P+ + MDCYFRQ W D RL ++ K L ++ + L KIW+PDT+I NG+ SYLH +T PN+F+R+ P+GR+ YSQRLT+KA C+MDL FP+D Q CPL+IGSFG+ +++++Y WT+ +++ + L+Q+ LIS T + G + ++ H QR G +++Q+Y P L+V SWV+FWL + R SLG T L + +G ++ P+V YATALD F+ + FM++FA + + I+FI + N E Sbjct: 74 SRVSRTLDALLSENRYDRQIRPQIGDSPIKVSVNFAIRSMGPVDEQKQLFLMDCYFRQYWTDPRLVYNSSKLNELPMNWQXLTKIWRPDTFIINGKNSYLHKMTVPNRFIRISPDGRISYSQRLTVKARCEMDLRKFPLDSQHCPLEIGSFGHGVDEILYNWTS-MPLSMDKKLGLAQYHLISWNNSAFTRYSRNAGGDQNVSVIALHFTFQRRTGYYLLQIYIPLTLIVCCSWVTFWLIKTEKGGEIPARTSLGGTXXLAIVTIGFGGKSK-PRVGYATALDVFIVLCFMTVFAALIE--FAFINFIDTLVRRLKKNDE 389
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000009047 (supercontig:LSalAtl2s:LSalAtl2s566:676793:679625:-1 gene:EMLSAG00000009047 transcript:EMLSAT00000009047 description:"maker-LSalAtl2s566-snap-gene-5.58") HSP 1 Score: 210.305 bits (534), Expect = 1.175e-58 Identity = 102/261 (39.08%), Postives = 158/261 (60.54%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN--LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V + + +F + +S+ Y++ Y Q W D RLSFS ++ L LS + KIW PDT+ N + S+LH +T NK +RL +G + Y R T +C MDL +P+D Q C ++I S+GYT++DV+ W V + D +L QF ++ T L G + L + F LQR++G FV Q Y P +L+V++SWVSFW+N EATS R++LG+TTVLTMT + R+ LP+++Y A+D ++ + F+ +FA + + Sbjct: 106 VGFDLTIASFDSISEVSMDYTITMYLNQYWKDERLSFSTEEDKVLTLSGDFSEKIWVPDTFFANDKNSFLHDVTEQNKMVRLHGDGAITYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWRQKPVVGV-EDAQLPQFTIVGWETNERKIKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLE 365
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000003120 (supercontig:LSalAtl2s:LSalAtl2s1753:14457:18648:1 gene:EMLSAG00000003120 transcript:EMLSAT00000003120 description:"maker-LSalAtl2s1753-augustus-gene-0.11") HSP 1 Score: 216.468 bits (550), Expect = 8.344e-58 Identity = 107/263 (40.68%), Postives = 161/263 (61.22%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSF---SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGR-GVNIASDMKLSQFDLISTPTGNSTTFLNKG------QHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 + + P+ S SY +D YFRQ+WVD+RLSF S L L+ ++L KIWKPDTY NG+KS +H IT PN+F+R+ P+G V +SQRLTI A C M+L FP D Q CPL IGS+GYT ++V+Y W ++ + ++QF+L+ + T+ N+ S + F +R G F++Q+Y P ++V+ SWV+FW+ + R+SLGV + L++T +G + P V Y TALD F+ I FM++F ++ + Sbjct: 516 INSMGPVDEKSQSYLVDAYFRQAWVDQRLSFNATSSVTELPLNWQILNKIWKPDTYFINGKKSKMHKITVPNRFLRISPDGLVSFSQRLTIHAQCLMELKKFPFDSQECPLHIGSYGYTADEVLYDWKDNALEISTLAKATMTQFNLMKWISQAETSITNRKIAAGFRNDSIASINFSFKRQYGFFLLQIYTPMFIIVMCSWVAFWIVKTDAPSRVSLGVASSLSVTKIGFAGKGK-PNVEYPTALDIFIIICFMTVFLSLVE 777
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000011971 (supercontig:LSalAtl2s:LSalAtl2s84:948400:1079594:1 gene:EMLSAG00000011971 transcript:EMLSAT00000011971 description:"maker-LSalAtl2s84-augustus-gene-10.5") HSP 1 Score: 178.333 bits (451), Expect = 1.632e-48 Identity = 87/231 (37.66%), Postives = 132/231 (57.14%), Query Frame = 0 Query: 1031 ISVSYSMDCYFRQSWVDRRLSFSGRKNLALSIEMLR---KIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALD 1258 + + YS+ FR+ W D RL + + L L K+W PDT+ N +++ H I PN ++R+FPNG +LYS R+++ +C MDL +P+DKQ C LQI S+G+ +D+IY W V + + L +F L + N G++S L V +R ++I +Y PC +LV++SWVSFWL++ A R+SLGVTT+LTM+ LP V+Y A+D Sbjct: 57 VKMEYSVQVTFREQWNDERLRYYDDTHGHLKYLTLTDPTKVWMPDTFFRNEKEARKHEIIVPNVYVRIFPNGEILYSIRISLTLACPMDLRLYPLDKQVCVLQIASYGWAKDDLIYLWKEKDPVQVVPGLHLPRFTLEQYKSAYCDVTTNTGEYSCLKVELIFKREFSYYLITIYVPCCMLVIVSWVSFWLDQNAIPARVSLGVTTLLTMSTQTSGINAQLPPVSYTKAID 287
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000010137 (supercontig:LSalAtl2s:LSalAtl2s66:38297:115963:1 gene:EMLSAG00000010137 transcript:EMLSAT00000010137 description:"snap_masked-LSalAtl2s66-processed-gene-1.3") HSP 1 Score: 175.252 bits (443), Expect = 3.882e-48 Identity = 89/246 (36.18%), Postives = 143/246 (58.13%), Query Frame = 0 Query: 1033 VSYSMDCYFRQSWVDRRLSFSGRKN-LALSI-EMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQW--TAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 + Y D Y RQ W D RLS K+ L L+ +++ IWKP+ + N +++ +T PN +R+ PNG +LY RL +K SC M+LS +P+D Q C +QI SF T +++ +W T V +A D+++ QF++ T + G +S L+ FHL R +G +IQ Y P VL+V ISWVSFW++ + R++LGV T+LT++ + T +PQ +Y A+D ++ + +FA + + Sbjct: 1 MDYVTDTYLRQKWSDSRLSHPDIKSPLDLAXPNLVKAIWKPEVFFPNAKEANFQFVTVPNVLIRIHPNGEILYILRLRLKFSCMMELSRYPLDTQICAMQISSFSKTTKELLLEWDPTHELSVTVAKDLRMPQFEMTKITTNRCHETNHMGNYSCLVAEFHLHRSIGFHLIQSYLPSVLIVAISWVSFWMDVDCVPARVTLGVITLLTVS--SQVSGTSVPQTSYVKAIDVWMGVCTAFVFAALVE 244
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000000919 (supercontig:LSalAtl2s:LSalAtl2s115:697711:740183:1 gene:EMLSAG00000000919 transcript:EMLSAT00000000919 description:"maker-LSalAtl2s115-augustus-gene-7.11") HSP 1 Score: 172.94 bits (437), Expect = 9.853e-46 Identity = 86/242 (35.54%), Postives = 141/242 (58.26%), Query Frame = 0 Query: 1032 SVSYSMDCYFRQSWVDRRLSFSGRKNLA---LSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFA 1270 S++Y+ D +F QSW D RL L IE L KIW+PD++ N + T+T PN ++ L+ + +LY +LT+ SC M ++P D Q C L+I S +T +D+I+ W +++ ++L Q +LIST + + TT + GQ + L V F +R +G ++ Y P L+V++SW+SFW+ EA R++LGVT++LT++ ++ LP V+Y A+D VF+S ++F Sbjct: 39 SMTYTCDVFFAQSWKDNRLRLPDNMTSEYRLLPIEWLEKIWRPDSFFKNAKSVTFQTMTIPNHYIWLWKDKTILYMVKLTLVLSCPMHFKNYPHDTQTCNLEIESISHTTDDLIFTWDKEMPLDVDKGIELPQLELISTKSDDCTTVYSTGQFTCLEVVFKFKRRLGYYLFHTYVPTCLIVIMSWISFWIKPEAVPARVTLGVTSLLTLSTQHANSQKSLPPVSYIKAID--VFMSGCTVFV 278
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000006195 (supercontig:LSalAtl2s:LSalAtl2s339:168354:194952:-1 gene:EMLSAG00000006195 transcript:EMLSAT00000006195 description:"maker-LSalAtl2s339-augustus-gene-2.20") HSP 1 Score: 155.606 bits (392), Expect = 5.290e-40 Identity = 86/280 (30.71%), Postives = 137/280 (48.93%), Query Frame = 0 Query: 1031 ISVSYSMDCYFRQSWVDRRLSFSGRKNLALSIEML-----------------------------------RKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKL-SQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 + + YS RQ W D RL F K+ LS+E + K+W DT+ N + H I N ++R+FPNG VLYS R+++ +C M L+ FP+DKQ C L + S+G+T+ND+IYQW V + +++ L F L N G +S L V R + +V+ +Y PC ++V++SW+SFW++ +A R+SLG+T +L M+ + LP VAY A+D + + +F+ + + Sbjct: 91 VKMEYSFQITLRQQWNDGRLRF---KDKLLSMEGIVIDFDFNIIPFYPDAASSGGLFQKDKIRYLTMTDSSKVWMXDTFFXNEKIGRFHNILQDNLYVRVFPNGDVLYSIRVSLTCACSMHLALFPLDKQTCNLDVASYGWTMNDLIYQWKETNPVQMVANLSLPGGFKLDGFTNHNCDVKXATGSYSCLRVEITFARQLSFYVLTIYIPCFMIVLVSWMSFWIDHKAVPARVSLGITXLLAMSTTQASINSSLPPVAYTKAIDVWCGVCVTFVFSALLE 367
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000000070 (supercontig:LSalAtl2s:LSalAtl2s100:516339:598693:-1 gene:EMLSAG00000000070 transcript:EMLSAT00000000070 description:"maker-LSalAtl2s100-snap-gene-5.24") HSP 1 Score: 148.288 bits (373), Expect = 8.232e-40 Identity = 74/217 (34.10%), Postives = 125/217 (57.60%), Query Frame = 0 Query: 1027 PLICISVSYSMDCYFRQSWVDRRLSFSG---RKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASD--MKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMT 1238 PL ++Y+ D +F Q W D RL R+ L +E L IW+PD++ N +K T+T PN ++ L+ + +LY +LT+ SC M+ ++P D+Q C L + +T +D+I+ W +A D ++L Q +L+S TG+ T+ + G + L V F +R +G ++ Y P L+V++SW+SFW+ EA R++LGVT++LT++ Sbjct: 8 PLEFEDITYAADVFFAQEWKDHRLILPDNMTREYRLLPVEWLHLIWRPDSFFKNAKKVTFQTMTIPNHYLWLYKDKTILYMVKLTLLLSCPMNFENYPHDEQNCKLSM-EMSHTTDDLIFIWLPEDKTPLAVDNGIQLPQLELVSNDTGDCTSVYSTGNFTCLEVIFKFRRRLGYYLFHTYIPTCLIVMMSWISFWIKPEAXXARVTLGVTSLLTLS 223
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|57012755|sp|Q24352.1|GBRAL_DROME (RecName: Full=Gamma-aminobutyric acid receptor alpha-like; AltName: Full=GABA(A) receptor alpha-like and glycine receptor-like subunit of Drosophila; Short=GRD; Flags: Precursor) HSP 1 Score: 287.345 bits (734), Expect = 1.316e-81 Identity = 158/331 (47.73%), Postives = 199/331 (60.12%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPM-----------------------DKQRCPLQIGS------------FGYTINDVIYQWTAGR---------------------------------GVNIASDMKLSQFDLISTPTGNSTTFLN---------KGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V + P+ + ++YSMDCYFRQSWVD+RL+F G ++ LALS+ ML +IWKPDTY YNG++SYLHTITTPNKF+R++ NGRVLYS RLTIKA C M+L+DFPM +K+R P+ I + D++Y+ A R G + D +T STT L+ ++S L+V FHLQRHMGNF+IQVYGPC LLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V+Y TALD+FVF+SF IFAT+ Q Sbjct: 141 VRSMGPISEVDMTYSMDCYFRQSWVDKRLAFEGAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLTIKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAEDMKLSQFDLVDCPAGNLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQ 471 HSP 2 Score: 69.707 bits (169), Expect = 1.377e-10 Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 0 Query: 714 NVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCAS 761 N++ LLDNLL+ YDNS+RP+ GG P +E+++ VRSMGPISEVDM S Sbjct: 108 NISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYS 155 HSP 3 Score: 57.7658 bits (138), Expect = 6.780e-7 Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = 0 Query: 1475 NSVSRIDKISRVVFPLIFLVINIVYWYKYLNHSERI 1510 NSVS+ID+ SR+VFPL+F++IN+ YWY YL+ S RI Sbjct: 642 NSVSKIDRASRIVFPLLFILINVFYWYGYLSRSSRI 677
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|143811394|sp|P20237.2|GBRA4_BOVIN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-4; AltName: Full=GABA(A) receptor subunit alpha-4; Flags: Precursor) HSP 1 Score: 256.914 bits (655), Expect = 1.310e-72 Identity = 170/520 (32.69%), Postives = 255/520 (49.04%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGR-KNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASDMK-LSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSEPQINDFQAEPDEYLEQAFLHHNHYHTS-----------------TPSFQDVTYRTLPMVGNHLTGNGKAKTLTFEDNPGLPPQERNILNHHPYGTFYYSKKNGRSGKRPNVLRKS---------QSMVSKASSQANLANGRRRIRSQNGTSWNSLGRSMTEVTDLSNTGSKVDRWNSAGGELSDLDQCGCKRCVTRALNNPEQALNSVSRIDKISRVVFPLIFLVINIVYWYKYLN 1505 VK V +F P+ + + Y+MD +FRQ+W+D+RL + G + L L+ M+ K+W PDT+ NG+KS H +T PNK R+ NG +LY+ RLTI A C M L DFPMD CPL+ GS+ Y +++IY WT G + V + + L Q+DLI + T G++ + V FHL+R MG F+IQ Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + I F N + + E P E L H T S DV RT VGNH + K+ T+ + + PQ + +P+ ++ + P+ L + Q V AS+Q + +RI+ T+ NS+G S G+LS T + P + + S+IDK +R++FP+ F N+VYW YL+ Sbjct: 74 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWIDKRLKYDGPIEILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEKSVEVPKESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSAL-------IEFAAVNY-FTNVQMEKAKRKTSKAPQEISAAPVLREKHPETPLQNTNANLSMRKRANALVHSESDVGSRT--DVGNH---SSKSSTVV-QGSSEATPQSYLASSPNPFSRANAAETISAARAIPSALPSTPSRTGYVPRQVPVGSASTQHVFGSRLQRIK----TTVNSIGTS---------------------GKLS----------ATTTPSAPPPSGSGTSKIDKYARILFPVTFGAFNMVYWVVYLS 544
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|341941084|sp|P16305.3|GBRA6_MOUSE (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor) HSP 1 Score: 251.906 bits (642), Expect = 5.073e-72 Identity = 135/357 (37.82%), Postives = 197/357 (55.18%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIA---SDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSEPQINDFQAEP------DEYLEQAFLHH--NHYHTSTPSFQDVTYRTLPMVGNHLTGNGKAKTLTFEDNPGLPP 1360 VK V +F P+ + + Y+MD +FRQ+W D RL F G L+L+ M+ KIW PDT+ NG+KS H +TTPNK RL NG +LY+ RLTI A C M L +FPMD CPL+ GS+ Y ++IY W G ++ L Q+DLI + T N G++ + V FHLQR MG F+IQ+Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + E + + + S +E Q P E L+ + H + YH + ++ TLP+V + ++T + P PP Sbjct: 58 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFKGPAEILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRLMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKTEIIYTWKKGPLYSVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALI-----EFAAVNYFTNLQSQKAERQAQTAATPPVAKSKASESLQAEIVVHSDSKYHLK----KRISSLTLPIVPSSEASKALSRTPILKSTPVSPP 405
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|206729865|sp|P48169.2|GBRA4_HUMAN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-4; AltName: Full=GABA(A) receptor subunit alpha-4; Flags: Precursor) HSP 1 Score: 254.603 bits (649), Expect = 1.035e-71 Identity = 167/503 (33.20%), Postives = 258/503 (51.29%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGR-KNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASDMK-LSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ----QYMEEISFIGNNSGYISANSEPQINDFQAE--PDEYLEQAFLHHNHYHTSTP---SFQDVTYRTLPMVGNHLTGNGKAKTLTFEDNPGLPPQERNILNHHPYGTFYYSKKNGRSGKRPNVLRKSQSMVSKASSQANLANGRRRIRSQNGTSWNSLGRSMTEVTDLSNTGSKVDRWNSAGGELSDLDQCGCKRCVTRALNNPEQALNSVSRIDKISRVVFPLIFLVINIVYWYKYLN 1505 VK V +F P+ + + Y+MD +FRQ+W+D+RL + G + L L+ M+ K+W PDT+ NG+KS H +T PNK R+ NG +LY+ RLTI A C M L DFPMD CPL+ GS+ Y +++IY WT G + V + + L Q+DLI + T G++ + V FHL+R MG F+IQ Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + + Y I E Q E P+ L+ + N + S DV RT VGNH + K+ T+ E + G P R+ L PN ++ + + ++++A + IR+ S+G + T GS++ R + ++ + G K T + P + + S+IDK +R++FP+ F N+VYW YL+ Sbjct: 74 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWIDKRLKYDGPIEILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEKSVEVPKESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNIQMEKAKRKTSKPPQEVPAAPVQREKHPEAPLQNTNANLNMRKRTNALVHSESDVGNRT--EVGNH---SSKSSTVVQESSKGTP---RSYL-----------------ASSPNPFSRANAAETISAARALPSASPTSIRTGYMPRKASVGSASTRHV----FGSRLQRIKTT---VNTIGATG-KLSATPPPSAPPPSGSGTSKIDKYARILFPVTFGAFNMVYWVVYLS 543
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|126302548|sp|Q16445.2|GBRA6_HUMAN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor) HSP 1 Score: 250.751 bits (639), Expect = 1.272e-71 Identity = 134/362 (37.02%), Postives = 196/362 (54.14%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIA---SDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATV-------------TQQYMEEISFIGNNSGYISANSEPQINDFQAEPDEYLEQAFLHHNHYHTSTPSFQDVTYRTLPMVGNHLTGNGKAKTLTFEDNPGLPP 1360 VK V +F P+ + + Y+MD +FRQ+W D RL F G L+L+ M+ KIW PDT+ NG+KS H +TTPNK R+ NG +LY+ RLTI A C M L +FPMD CPL+ GS+ Y +++IY W G ++ L Q+DLI + T N G++ + V FHLQR MG F+IQ+Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + TQ+ + F + IS +EP + PD + YH + +T +LP+V + + + P PP Sbjct: 58 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFGGPTEILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGPLYSVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQTQKAKRKAQFAAPPTVTISKATEPLEAEIVLHPD----------SKYHLK----KRITSLSLPIVSSSEANKVLTRAPILQSTPVTPP 405
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|232127|sp|P30191.1|GBRA6_RAT (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor) HSP 1 Score: 250.366 bits (638), Expect = 1.919e-71 Identity = 136/357 (38.10%), Postives = 197/357 (55.18%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIA---SDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSEPQINDFQAEP------DEYLEQAFLHH--NHYHTSTPSFQDVTYRTLPMVGNHLTGNGKAKTLTFEDNPGLPP 1360 VK V +F P+ + + Y+MD +FRQ+W D RL F G L+L+ M+ KIW PDT+ NG+KS H +TTPNK RL NG +LY+ RLTI A C M L +FPMD CPL+ GS+ Y +++IY W G ++ L Q+DLI + T N G++ + V FHLQR MG F+IQ+Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + E + + + S +E Q P E LE + H + YH + ++ TLP+V + ++T P PP Sbjct: 58 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFKGPAEILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRLMHNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGPLYSVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALI-----EFAAVNYFTNLQSQKAERQAQTAAKPPVAKSKTTESLEAEIVVHSDSKYHLK----KRISSLTLPIVPSSEASKVLSRTPILPSTPVTPP 405
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|13959377|sp|Q9D6F4.1|GBRA4_MOUSE (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-4; AltName: Full=GABA(A) receptor subunit alpha-4; Flags: Precursor) HSP 1 Score: 249.595 bits (636), Expect = 4.893e-70 Identity = 164/506 (32.41%), Postives = 250/506 (49.41%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGR-KNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASDMK-LSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSEPQINDFQAEPDEYLEQAFLHHNHYHTS---TPSFQDVTYRTLPMVGNHL-------TGNGKAKTLTFEDNPGLPPQERNILNHHPYGTFYYSKKNGRSGKRPNVLRKSQSMVSKASSQANLA-NGRRRIRSQNGTSWN-SLGRSMTEVTDLSNTGSKVDRWNSAGGELSDLDQCGCKRCVTRALNNPEQALNSVSRIDKISRVVFPLIFLVINIVYWYKYLN 1505 VK V +F P+ + + Y+MD +FRQ+W+D+RL + G + L L+ M+ K+W PDT+ NG+KS H +T PNK R+ NG +LY+ RLTI A C M L DFPMD CPL+ GS+ Y +++IY WT G + V + + L Q+DLI + T G++ + V FHL+R MG F+IQ Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + I F N + + + P E L H TS T + ++ RT +V + GN +KT +++ P+ + +P+ R N + SS A+ + +G R S S + G + + NT A G +S T P + + S+IDK +R++FP+ F N+VYW YL+ Sbjct: 74 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWIDKRLKYDGPIEILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEKSVEVPKESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSAL-------IEFAAVNY-FTNIQMQKAKKKISKPPPEVPAAPVLKEKHTETSLQNTHANLNMRKRTNALVHSESDVKSRTEVGNHSSKTSAVQESSEATPKAHLASSPNPFS-------------RANAAETMSAAARGLSSAASPSPHGTLRPASLGSASTRPAFGSRLGRIKTTVNT-------TGAAGNVS----------ATPPPPAPPPSGSGTSKIDKYARILFPVTFGAFNMVYWVVYLS 541
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|3023835|sp|Q90845.1|GBRA6_CHICK (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor) HSP 1 Score: 243.432 bits (620), Expect = 6.585e-69 Identity = 117/263 (44.49%), Postives = 166/263 (63.12%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASDMK-LSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 VK V +F P+ + + Y+MD +FRQ+W D RL F G L L+ M+ KIW PDT+ NG+KS H +TTPNK R+ NG +LY+ RLTI A C M L +FPMD CPL+ GS+ Y +++IY W G V + + L Q+DLI + T N G++ + V FHLQR MG F+IQ+Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + + Sbjct: 58 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFGGPTEILRLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGPLHSVEVPQESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIE 320
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|120763|sp|P28471.1|GBRA4_RAT (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-4; AltName: Full=GABA(A) receptor subunit alpha-4; Flags: Precursor) HSP 1 Score: 240.35 bits (612), Expect = 7.114e-67 Identity = 114/263 (43.35%), Postives = 168/263 (63.88%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGR-KNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASDMK-LSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 VK V +F P+ + + Y+MD +FRQ+W+D+RL + G + L L+ M+ K+W PDT+ NG+KS H +T PNK R+ NG +LY+ RLTI A C M L DFPMD CPL+ GS+ Y +++IY WT G + V + + L Q+DLI + T G++ + V FHL+R MG F+IQ Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + + Sbjct: 74 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWIDKRLKYDGPIEILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEKSVEVPKESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIE 336
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|462149|sp|P34903.1|GBRA3_HUMAN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-3; AltName: Full=GABA(A) receptor subunit alpha-3; Flags: Precursor) HSP 1 Score: 231.106 bits (588), Expect = 2.313e-64 Identity = 121/263 (46.01%), Postives = 169/263 (64.26%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSG-RKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASD-MKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 VK V +F P+ + Y++D +FRQ+W D RL F G K L L+ + KIW PDT+ +NG+KS H +TTPNK +RL NG +LY+ RLTI A C M L DFPMD CPL+ GS+ YT +V+Y WT G + V +A D +L+Q+DL+ G + G++ + FHL+R +G FVIQ Y PC++ V++S VSFWLNRE+ R GVTTVLTMT L + AR LP+VAYATA+D+F+ + + +F+ + + Sbjct: 93 VKTDIYVTSFGPVSDTDMEYTIDVFFRQTWHDERLKFDGPMKILPLNNLLASKIWTPDTFFHNGKKSVAHNMTTPNKLLRLVDNGTLLYTMRLTIHAECPMHLEDFPMDVHACPLKFGSYAYTTAEVVYSWTLGKNKSVEVAQDGSRLNQYDLLGHVVGTEIIRSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIE 355
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|572264917|ref|XP_006610609.1| (PREDICTED: gamma-aminobutyric acid receptor alpha-like [Apis dorsata]) HSP 1 Score: 384.415 bits (986), Expect = 1.010e-115 Identity = 180/256 (70.31%), Postives = 215/256 (83.98%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSF-SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGN--STTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V + P+ + ++YSMDCYFRQSWVDRRL+F G++ LALSI ML +IWKPDTY YNG+ SYLHTIT+PNKF+RL+ +GRVLYS RLTIKA C M+L +FPMD QRCPLQ GSFGYT DVIY+W + R V IA DMKLSQFDL++ PT N ++T L+ ++S L+V FHLQRHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q Sbjct: 89 VRSMGPISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGSFGYTKRDVIYKWNSARQVAIAEDMKLSQFDLVANPTANYSASTTLSHAEYSMLLVYFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATIIQ 344 HSP 2 Score: 73.1738 bits (178), Expect = 2.446e-9 Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 0 Query: 701 VRNQARNRNQTAD--NVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCAS 761 + R R Q+ + N++ LLDNLL+ YDNS+RP+ GG P VEI++ VRSMGPISEVDM S Sbjct: 41 AKTSTRQRTQSNNHSNISELLDNLLRGYDNSVRPDFGGPPATVEIDIMVRSMGPISEVDMTYS 103
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|380013377|ref|XP_003690737.1| (PREDICTED: gamma-aminobutyric acid receptor alpha-like [Apis florea]) HSP 1 Score: 384.415 bits (986), Expect = 1.095e-115 Identity = 180/256 (70.31%), Postives = 215/256 (83.98%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSF-SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGN--STTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V + P+ + ++YSMDCYFRQSWVDRRL+F G++ LALSI ML +IWKPDTY YNG+ SYLHTIT+PNKF+RL+ +GRVLYS RLTIKA C M+L +FPMD QRCPLQ GSFGYT DVIY+W + R V IA DMKLSQFDL++ PT N ++T L+ ++S L+V FHLQRHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q Sbjct: 89 VRSMGPISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGSFGYTKRDVIYKWNSARQVAIAEDMKLSQFDLVANPTANYSASTTLSHAEYSMLLVYFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATIIQ 344 HSP 2 Score: 72.7886 bits (177), Expect = 3.708e-9 Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0 Query: 701 VRNQARNRNQTAD--NVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCAS 761 + R R Q+ + N++ LLDNLL+ YDNS+RP+ GG P VE+++ VRSMGPISEVDM S Sbjct: 41 AKTSTRQRTQSNNHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYS 103
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|645014751|ref|XP_008206160.1| (PREDICTED: GABA-gated ion channel GRD isoform X1 [Nasonia vitripennis] >gi|645014753|ref|XP_008206161.1| PREDICTED: GABA-gated ion channel GRD isoform X1 [Nasonia vitripennis]) HSP 1 Score: 382.104 bits (980), Expect = 1.146e-115 Identity = 188/292 (64.38%), Postives = 231/292 (79.11%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSF-SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNST-TFLNK----GQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSEPQINDFQAEPDE 1307 V + P+ + ++YSMDCYFRQSWVDRRL+F SG++ LALSI ML +IWKPDTY YNG++SYLHTIT+PNKF+RL+ +GRVLYS RLTIKA+C M+L DFPMD QRCPL+ GS+GYT DVIY+W + R V IA DMKLSQFDL+ PT N+T + L++ ++S L+V FHL+RHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q + F SG NSE + ND ++ E Sbjct: 84 VRSMGPISEVDMTYSMDCYFRQSWVDRRLAFQSGKETLALSISMLARIWKPDTYFYNGKQSYLHTITSPNKFVRLYQDGRVLYSSRLTIKAACPMNLEDFPMDTQRCPLKFGSYGYTTRDVIYKWNSARQVAIAHDMKLSQFDLVGNPTANATDSTLSQNSLVAEYSMLLVSFHLKRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFGFIFATIIQFAVVHY-FTKYGSGECYFNSETE-NDVESSDSE 373 HSP 2 Score: 73.9442 bits (180), Expect = 1.167e-9 Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 0 Query: 706 RNRNQTAD--NVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCAS 761 R R Q+ + N++ LLDNLL+ YDNS+RPN GG P +VE+++ VRSMGPISEVDM S Sbjct: 41 RERTQSNNHGNISELLDNLLRGYDNSVRPNFGGPPAVVEVDIMVRSMGPISEVDMTYS 98
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|780701581|ref|XP_011702172.1| (PREDICTED: gamma-aminobutyric acid receptor alpha-like isoform X2 [Wasmannia auropunctata]) HSP 1 Score: 383.259 bits (983), Expect = 1.252e-115 Identity = 179/245 (73.06%), Postives = 208/245 (84.90%), Query Frame = 0 Query: 1033 VSYSMDCYFRQSWVDRRLSF-SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTF--LNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 ++YSMDCYFRQSWVDRRL+F G++ LALSI ML KIWKPDTY YNG+ SYLHTIT+PNKF+RL+ NGRVLYS RLTIKA C M+L DFPMD Q+CPLQ GSFGYT DVIY+W + R V IA DMKLSQFDL++ PT N +T + ++S L+V FHLQRHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q Sbjct: 70 MTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLAKIWKPDTYFYNGKHSYLHTITSPNKFVRLYQNGRVLYSSRLTIKAGCPMNLEDFPMDTQKCPLQFGSFGYTTRDVIYKWNSARQVAIAEDMKLSQFDLVANPTANHSTASGFSHAEYSILLVYFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATIIQ 314
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|350539609|ref|NP_001234887.1| (GABA-gated ion channel GRD precursor [Nasonia vitripennis] >gi|269856283|gb|ACZ51424.1| GABA-gated ion channel [Nasonia vitripennis]) HSP 1 Score: 381.719 bits (979), Expect = 1.485e-115 Identity = 188/292 (64.38%), Postives = 231/292 (79.11%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSF-SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNST-TFLNK----GQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSEPQINDFQAEPDE 1307 V + P+ + ++YSMDCYFRQSWVDRRL+F SG++ LALSI ML +IWKPDTY YNG++SYLHTIT+PNKF+RL+ +GRVLYS RLTIKA+C M+L DFPMD QRCPL+ GS+GYT DVIY+W + R V IA DMKLSQFDL+ PT N+T + L++ ++S L+V FHL+RHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q+ F SG NSE + ND ++ E Sbjct: 82 VRSMGPISEVDMTYSMDCYFRQSWVDRRLAFQSGKETLALSISMLARIWKPDTYFYNGKQSYLHTITSPNKFVRLYQDGRVLYSSRLTIKAACPMNLEDFPMDTQRCPLKFGSYGYTTRDVIYKWNSARQVAIAHDMKLSQFDLVGNPTANATDSTLSQNSLVAEYSMLLVSFHLKRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFGFIFATII-QFAVVHYFTKYGSGECYFNSETE-NDVESSDSE 371 HSP 2 Score: 73.9442 bits (180), Expect = 1.219e-9 Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 0 Query: 706 RNRNQTAD--NVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCAS 761 R R Q+ + N++ LLDNLL+ YDNS+RPN GG P +VE+++ VRSMGPISEVDM S Sbjct: 39 RERTQSNNHGNISELLDNLLRGYDNSVRPNFGGPPAVVEVDIMVRSMGPISEVDMTYS 96 The following BLAST results are available for this feature:
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold456_size166325:29522..90418- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold456_size166325-snap-gene-0.27 ID=maker-scaffold456_size166325-snap-gene-0.27|Name=gaba-gated ion channel grd isoform x2|organism=Tigriopus kingsejongensis|type=gene|length=60897bp|location=Sequence derived from alignment at scaffold456_size166325:29522..90418- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'gaba-gated ion channel grd isoform x2' has the following synonyms
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