gaba-gated ion channel grd isoform x2, maker-scaffold456_size166325-snap-gene-0.27 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000006968 (supercontig:LSalAtl2s:LSalAtl2s396:160743:177530:1 gene:EMLSAG00000006968 transcript:EMLSAT00000006968 description:"maker-LSalAtl2s396-augustus-gene-1.5") HSP 1 Score: 244.202 bits (622), Expect = 4.138e-71 Identity = 123/235 (52.34%), Postives = 156/235 (66.38%), Query Frame = 0 Query: 1037 MDCYFRQSWVDRRLSFSGRKN---------LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWT-AGRGVNIASDMKLSQFDLISTP---------TGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVA 1252 MDCYFRQ W RLSF+G KN L+L+++ML KIWKPDTY +NG SY+HTIT PNK +R+ +G + YS RLTIKA C M L FPMD Q CPL +GS+ YTI+ V Y+W + V +KLSQFD+I+T T + T G S L V LQRH G F+IQ+Y PC L+VV+SWV FWLNREATSDR+ LG+TTVLT++ + L++RTDLP++ Sbjct: 1 MDCYFRQYWRXERLSFTGLKNNTHHLKIDQLSLNVKMLEKIWKPDTYFHNGLSSYIHTITRPNKLLRISEHGDITYSMRLTIKAKCPMMLKSFPMDWQSCPLVLGSYAYTIDQVYYRWQHSSNAVAYEGKLKLSQFDIITTAYRSLNFSRNTDDRYTLPLVGGFSVLQVVIALQRHTGYFLIQIYLPCTLIVVLSWVGFWLNREATSDRVGLGITTVLTLSTIALDSRTDLPKMG 235
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000004091 (supercontig:LSalAtl2s:LSalAtl2s217:408116:410199:1 gene:EMLSAG00000004091 transcript:EMLSAT00000004091 description:"maker-LSalAtl2s217-augustus-gene-4.34") HSP 1 Score: 222.246 bits (565), Expect = 1.614e-62 Identity = 114/254 (44.88%), Postives = 163/254 (64.17%), Query Frame = 0 Query: 1034 SYSMDCYFRQSWVDRRLSF--SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGN----STTFLNKGQH---STLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSD----RISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 ++SMDCYFRQSWVD RL + SG + LAL+ L KIW PDT+I NG+KS+LH IT PN+F+R+ P G+V YSQRLTI A+C M+L FP D Q CPL++GSFG++ D+IYQW + V+ + + L+QF LI+ + N S KG + S+ ++ F +R G F++Q+Y P L+V SWV+FWL + R LG +VL++ +G + D P+V YATALD F+ + F ++FA + + Sbjct: 114 AFSMDCYFRQSWVDERLKYNTSGVEVLALNWAFLAKIWVPDTFIINGKKSFLHKITVPNRFVRVSPTGKVSYSQRLTILANCIMNLKKFPFDTQICPLKLGSFGHSNKDLIYQWKKPKAVSF-NKLGLAQFHLINYSSYNIIEPSLRLTEKGNYRNDSSSVMEFVFERQSGYFLLQIYTPLTLIVFCSWVAFWLVKTEKGGEXPARTXLGANSVLSIVNIGFTGK-DRPKVGYATALDVFIILCFFTVFAALVE 365
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000004092 (supercontig:LSalAtl2s:LSalAtl2s217:422807:437258:1 gene:EMLSAG00000004092 transcript:EMLSAT00000004092 description:"augustus_masked-LSalAtl2s217-processed-gene-4.1") HSP 1 Score: 213.772 bits (543), Expect = 1.309e-59 Identity = 119/320 (37.19%), Postives = 181/320 (56.56%), Query Frame = 0 Query: 998 SFVPSIMTAILSINDFDL------------VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRK--NLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNK--GQHSTLIVGFH--LQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSD----RISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSE 1295 S V + A+LS N +D V F + + P+ + MDCYFRQ W D RL ++ K L ++ + L KIW+PDT+I NG+ SYLH +T PN+F+R+ P+GR+ YSQRLT+KA C+MDL FP+D Q CPL+IGSFG+ +++++Y WT+ +++ + L+Q+ LIS T + G + ++ H QR G +++Q+Y P L+V SWV+FWL + R SLG T L + +G ++ P+V YATALD F+ + FM++FA + + I+FI + N E Sbjct: 74 SRVSRTLDALLSENRYDRQIRPQIGDSPIKVSVNFAIRSMGPVDEQKQLFLMDCYFRQYWTDPRLVYNSSKLNELPMNWQXLTKIWRPDTFIINGKNSYLHKMTVPNRFIRISPDGRISYSQRLTVKARCEMDLRKFPLDSQHCPLEIGSFGHGVDEILYNWTS-MPLSMDKKLGLAQYHLISWNNSAFTRYSRNAGGDQNVSVIALHFTFQRRTGYYLLQIYIPLTLIVCCSWVTFWLIKTEKGGEIPARTSLGGTXXLAIVTIGFGGKSK-PRVGYATALDVFIVLCFMTVFAALIE--FAFINFIDTLVRRLKKNDE 389
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000009047 (supercontig:LSalAtl2s:LSalAtl2s566:676793:679625:-1 gene:EMLSAG00000009047 transcript:EMLSAT00000009047 description:"maker-LSalAtl2s566-snap-gene-5.58") HSP 1 Score: 210.305 bits (534), Expect = 1.175e-58 Identity = 102/261 (39.08%), Postives = 158/261 (60.54%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN--LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V + + +F + +S+ Y++ Y Q W D RLSFS ++ L LS + KIW PDT+ N + S+LH +T NK +RL +G + Y R T +C MDL +P+D Q C ++I S+GYT++DV+ W V + D +L QF ++ T L G + L + F LQR++G FV Q Y P +L+V++SWVSFW+N EATS R++LG+TTVLTMT + R+ LP+++Y A+D ++ + F+ +FA + + Sbjct: 106 VGFDLTIASFDSISEVSMDYTITMYLNQYWKDERLSFSTEEDKVLTLSGDFSEKIWVPDTFFANDKNSFLHDVTEQNKMVRLHGDGAITYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWRQKPVVGV-EDAQLPQFTIVGWETNERKIKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLE 365
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000003120 (supercontig:LSalAtl2s:LSalAtl2s1753:14457:18648:1 gene:EMLSAG00000003120 transcript:EMLSAT00000003120 description:"maker-LSalAtl2s1753-augustus-gene-0.11") HSP 1 Score: 216.468 bits (550), Expect = 8.344e-58 Identity = 107/263 (40.68%), Postives = 161/263 (61.22%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSF---SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGR-GVNIASDMKLSQFDLISTPTGNSTTFLNKG------QHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 + + P+ S SY +D YFRQ+WVD+RLSF S L L+ ++L KIWKPDTY NG+KS +H IT PN+F+R+ P+G V +SQRLTI A C M+L FP D Q CPL IGS+GYT ++V+Y W ++ + ++QF+L+ + T+ N+ S + F +R G F++Q+Y P ++V+ SWV+FW+ + R+SLGV + L++T +G + P V Y TALD F+ I FM++F ++ + Sbjct: 516 INSMGPVDEKSQSYLVDAYFRQAWVDQRLSFNATSSVTELPLNWQILNKIWKPDTYFINGKKSKMHKITVPNRFLRISPDGLVSFSQRLTIHAQCLMELKKFPFDSQECPLHIGSYGYTADEVLYDWKDNALEISTLAKATMTQFNLMKWISQAETSITNRKIAAGFRNDSIASINFSFKRQYGFFLLQIYTPMFIIVMCSWVAFWIVKTDAPSRVSLGVASSLSVTKIGFAGKGK-PNVEYPTALDIFIIICFMTVFLSLVE 777
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000011971 (supercontig:LSalAtl2s:LSalAtl2s84:948400:1079594:1 gene:EMLSAG00000011971 transcript:EMLSAT00000011971 description:"maker-LSalAtl2s84-augustus-gene-10.5") HSP 1 Score: 178.333 bits (451), Expect = 1.632e-48 Identity = 87/231 (37.66%), Postives = 132/231 (57.14%), Query Frame = 0 Query: 1031 ISVSYSMDCYFRQSWVDRRLSFSGRKNLALSIEMLR---KIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALD 1258 + + YS+ FR+ W D RL + + L L K+W PDT+ N +++ H I PN ++R+FPNG +LYS R+++ +C MDL +P+DKQ C LQI S+G+ +D+IY W V + + L +F L + N G++S L V +R ++I +Y PC +LV++SWVSFWL++ A R+SLGVTT+LTM+ LP V+Y A+D Sbjct: 57 VKMEYSVQVTFREQWNDERLRYYDDTHGHLKYLTLTDPTKVWMPDTFFRNEKEARKHEIIVPNVYVRIFPNGEILYSIRISLTLACPMDLRLYPLDKQVCVLQIASYGWAKDDLIYLWKEKDPVQVVPGLHLPRFTLEQYKSAYCDVTTNTGEYSCLKVELIFKREFSYYLITIYVPCCMLVIVSWVSFWLDQNAIPARVSLGVTTLLTMSTQTSGINAQLPPVSYTKAID 287
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000010137 (supercontig:LSalAtl2s:LSalAtl2s66:38297:115963:1 gene:EMLSAG00000010137 transcript:EMLSAT00000010137 description:"snap_masked-LSalAtl2s66-processed-gene-1.3") HSP 1 Score: 175.252 bits (443), Expect = 3.882e-48 Identity = 89/246 (36.18%), Postives = 143/246 (58.13%), Query Frame = 0 Query: 1033 VSYSMDCYFRQSWVDRRLSFSGRKN-LALSI-EMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQW--TAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 + Y D Y RQ W D RLS K+ L L+ +++ IWKP+ + N +++ +T PN +R+ PNG +LY RL +K SC M+LS +P+D Q C +QI SF T +++ +W T V +A D+++ QF++ T + G +S L+ FHL R +G +IQ Y P VL+V ISWVSFW++ + R++LGV T+LT++ + T +PQ +Y A+D ++ + +FA + + Sbjct: 1 MDYVTDTYLRQKWSDSRLSHPDIKSPLDLAXPNLVKAIWKPEVFFPNAKEANFQFVTVPNVLIRIHPNGEILYILRLRLKFSCMMELSRYPLDTQICAMQISSFSKTTKELLLEWDPTHELSVTVAKDLRMPQFEMTKITTNRCHETNHMGNYSCLVAEFHLHRSIGFHLIQSYLPSVLIVAISWVSFWMDVDCVPARVTLGVITLLTVS--SQVSGTSVPQTSYVKAIDVWMGVCTAFVFAALVE 244
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000000919 (supercontig:LSalAtl2s:LSalAtl2s115:697711:740183:1 gene:EMLSAG00000000919 transcript:EMLSAT00000000919 description:"maker-LSalAtl2s115-augustus-gene-7.11") HSP 1 Score: 172.94 bits (437), Expect = 9.853e-46 Identity = 86/242 (35.54%), Postives = 141/242 (58.26%), Query Frame = 0 Query: 1032 SVSYSMDCYFRQSWVDRRLSFSGRKNLA---LSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFA 1270 S++Y+ D +F QSW D RL L IE L KIW+PD++ N + T+T PN ++ L+ + +LY +LT+ SC M ++P D Q C L+I S +T +D+I+ W +++ ++L Q +LIST + + TT + GQ + L V F +R +G ++ Y P L+V++SW+SFW+ EA R++LGVT++LT++ ++ LP V+Y A+D VF+S ++F Sbjct: 39 SMTYTCDVFFAQSWKDNRLRLPDNMTSEYRLLPIEWLEKIWRPDSFFKNAKSVTFQTMTIPNHYIWLWKDKTILYMVKLTLVLSCPMHFKNYPHDTQTCNLEIESISHTTDDLIFTWDKEMPLDVDKGIELPQLELISTKSDDCTTVYSTGQFTCLEVVFKFKRRLGYYLFHTYVPTCLIVIMSWISFWIKPEAVPARVTLGVTSLLTLSTQHANSQKSLPPVSYIKAID--VFMSGCTVFV 278
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000006195 (supercontig:LSalAtl2s:LSalAtl2s339:168354:194952:-1 gene:EMLSAG00000006195 transcript:EMLSAT00000006195 description:"maker-LSalAtl2s339-augustus-gene-2.20") HSP 1 Score: 155.606 bits (392), Expect = 5.290e-40 Identity = 86/280 (30.71%), Postives = 137/280 (48.93%), Query Frame = 0 Query: 1031 ISVSYSMDCYFRQSWVDRRLSFSGRKNLALSIEML-----------------------------------RKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKL-SQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 + + YS RQ W D RL F K+ LS+E + K+W DT+ N + H I N ++R+FPNG VLYS R+++ +C M L+ FP+DKQ C L + S+G+T+ND+IYQW V + +++ L F L N G +S L V R + +V+ +Y PC ++V++SW+SFW++ +A R+SLG+T +L M+ + LP VAY A+D + + +F+ + + Sbjct: 91 VKMEYSFQITLRQQWNDGRLRF---KDKLLSMEGIVIDFDFNIIPFYPDAASSGGLFQKDKIRYLTMTDSSKVWMXDTFFXNEKIGRFHNILQDNLYVRVFPNGDVLYSIRVSLTCACSMHLALFPLDKQTCNLDVASYGWTMNDLIYQWKETNPVQMVANLSLPGGFKLDGFTNHNCDVKXATGSYSCLRVEITFARQLSFYVLTIYIPCFMIVLVSWMSFWIDHKAVPARVSLGITXLLAMSTTQASINSSLPPVAYTKAIDVWCGVCVTFVFSALLE 367
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000000070 (supercontig:LSalAtl2s:LSalAtl2s100:516339:598693:-1 gene:EMLSAG00000000070 transcript:EMLSAT00000000070 description:"maker-LSalAtl2s100-snap-gene-5.24") HSP 1 Score: 148.288 bits (373), Expect = 8.232e-40 Identity = 74/217 (34.10%), Postives = 125/217 (57.60%), Query Frame = 0 Query: 1027 PLICISVSYSMDCYFRQSWVDRRLSFSG---RKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASD--MKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMT 1238 PL ++Y+ D +F Q W D RL R+ L +E L IW+PD++ N +K T+T PN ++ L+ + +LY +LT+ SC M+ ++P D+Q C L + +T +D+I+ W +A D ++L Q +L+S TG+ T+ + G + L V F +R +G ++ Y P L+V++SW+SFW+ EA R++LGVT++LT++ Sbjct: 8 PLEFEDITYAADVFFAQEWKDHRLILPDNMTREYRLLPVEWLHLIWRPDSFFKNAKKVTFQTMTIPNHYLWLYKDKTILYMVKLTLLLSCPMNFENYPHDEQNCKLSM-EMSHTTDDLIFIWLPEDKTPLAVDNGIQLPQLELVSNDTGDCTSVYSTGNFTCLEVIFKFRRRLGYYLFHTYIPTCLIVMMSWISFWIKPEAXXARVTLGVTSLLTLS 223
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|120760|sp|P26049.1|GBRA3_MOUSE (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-3; AltName: Full=GABA(A) receptor subunit alpha-3; Flags: Precursor) HSP 1 Score: 231.106 bits (588), Expect = 2.593e-64 Identity = 122/263 (46.39%), Postives = 169/263 (64.26%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSG-RKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASD-MKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 VK V +F P+ + Y++D +FRQ+W D RL F G K L L+ + KIW PDT+ +NG+KS H +TTPNK +RL NG +LY+ RLTI A C M L DFPMD CPL+ GS+ YT +VIY WT G + V +A D +L+Q+DL+ G + G++ + FHL+R +G FVIQ Y PC++ V++S VSFWLNRE+ R GVTTVLTMT L + AR LP+VAYATA+D+F+ + + +F+ + + Sbjct: 93 VKTDIYVTSFGPVSDTDMEYTIDVFFRQTWHDERLKFDGPMKILPLNNLLASKIWTPDTFFHNGKKSVAHNMTTPNKLLRLVDNGTLLYTMRLTIHAECPMHLEDFPMDVHACPLKFGSYAYTKAEVIYSWTLGKNKSVEVAQDGSRLNQYDLLGHVVGTEIIRSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIE 355
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|120759|sp|P10064.1|GBRA3_BOVIN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-3; AltName: Full=GABA(A) receptor subunit alpha-3; Flags: Precursor) HSP 1 Score: 229.95 bits (585), Expect = 4.948e-64 Identity = 121/263 (46.01%), Postives = 169/263 (64.26%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSG-RKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASD-MKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 VK V +F P+ + Y++D +FRQ+W D RL F G K L L+ + KIW PDT+ +NG+KS H +TTPNK +RL NG +LY+ RLTI A C M L DFPMD CPL+ GS+ YT +V+Y WT G + V +A D +L+Q+DL+ G + G++ + FHL+R +G FVIQ Y PC++ V++S VSFWLNRE+ R GVTTVLTMT L + AR LP+VAYATA+D+F+ + + +F+ + + Sbjct: 93 VKTDIYVTSFGPVSDTDMEYTIDVFFRQTWHDERLKFDGPMKILPLNNLLASKIWTPDTFFHNGKKSVAHNMTTPNKLLRLVDNGTLLYTMRLTIHAECPMHLEDFPMDVHACPLKFGSYAYTTAEVVYSWTLGKNKSVEVAQDGSRLNQYDLLGHVVGTEIIRSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFMAVCYAFVFSALIE 355
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|120761|sp|P20236.1|GBRA3_RAT (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-3; AltName: Full=GABA(A) receptor subunit alpha-3; Flags: Precursor) HSP 1 Score: 229.95 bits (585), Expect = 5.169e-64 Identity = 122/263 (46.39%), Postives = 169/263 (64.26%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSG-RKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASD-MKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 VK V +F P+ + Y++D +FRQ+W D RL F G K L L+ + KIW PDT+ +NG+KS H +TTPNK +RL NG +LY+ RLTI A C M L DFPMD CPL+ GS+ YT +VIY WT G + V +A D +L+Q+DL+ G + G++ + FHL+R +G FVIQ Y PC++ V++S VSFWLNRE+ R GVTTVLTMT L + AR LP+VAYATA+D+F+ + + +F+ + + Sbjct: 93 VKTDIYVTSFGPVSDTDMEYTIDVFFRQTWHDERLKFDGPMKILPLNNLLASKIWTPDTFFHNGKKSVAHNMTTPNKLLRLVDNGTLLYTMRLTIHAECPMHLEDFPMDVHACPLKFGSYAYTKAEVIYSWTLGKNKSVEVAQDGSRLNQYDLLGHVVGTEIIRSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFMAVCYAFVFSALIE 355
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|209572895|sp|Q5RCC5.2|GBRA2_PONAB (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-2; AltName: Full=GABA(A) receptor subunit alpha-2; Flags: Precursor) HSP 1 Score: 228.409 bits (581), Expect = 7.297e-64 Identity = 117/257 (45.53%), Postives = 167/257 (64.98%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWT--AGRGVNIASD-MKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V +F P+ + Y++D +FRQ W D RL F G N L L+ M KIW PDT+ +NG+KS H +T PNK +R+ +G +LY+ RLT++A C M L DFPMD CPL+ GS+ YT ++V Y WT A V +A D +L+Q+DL+ G T + G+++ + FHL+R +G FVIQ Y PC++ V++S VSFWLNRE+ R GVTTVLTMT L + AR LP+VAYATA+D+F+ + + +F+ + + Sbjct: 74 VTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIE 330
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|126302547|sp|P47869.2|GBRA2_HUMAN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-2; AltName: Full=GABA(A) receptor subunit alpha-2; Flags: Precursor) HSP 1 Score: 228.409 bits (581), Expect = 7.508e-64 Identity = 117/257 (45.53%), Postives = 167/257 (64.98%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWT--AGRGVNIASD-MKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V +F P+ + Y++D +FRQ W D RL F G N L L+ M KIW PDT+ +NG+KS H +T PNK +R+ +G +LY+ RLT++A C M L DFPMD CPL+ GS+ YT ++V Y WT A V +A D +L+Q+DL+ G T + G+++ + FHL+R +G FVIQ Y PC++ V++S VSFWLNRE+ R GVTTVLTMT L + AR LP+VAYATA+D+F+ + + +F+ + + Sbjct: 74 VTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIE 330
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|120757|sp|P26048.1|GBRA2_MOUSE (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-2; AltName: Full=GABA(A) receptor subunit alpha-2; Flags: Precursor) HSP 1 Score: 228.024 bits (580), Expect = 9.349e-64 Identity = 117/257 (45.53%), Postives = 167/257 (64.98%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWT--AGRGVNIASD-MKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V +F P+ + Y++D +FRQ W D RL F G N L L+ M KIW PDT+ +NG+KS H +T PNK +R+ +G +LY+ RLT++A C M L DFPMD CPL+ GS+ YT ++V Y WT A V +A D +L+Q+DL+ G T + G+++ + FHL+R +G FVIQ Y PC++ V++S VSFWLNRE+ R GVTTVLTMT L + AR LP+VAYATA+D+F+ + + +F+ + + Sbjct: 74 VTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIE 330
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|120758|sp|P23576.1|GBRA2_RAT (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-2; AltName: Full=GABA(A) receptor subunit alpha-2; Flags: Precursor) HSP 1 Score: 226.868 bits (577), Expect = 2.143e-63 Identity = 116/257 (45.14%), Postives = 166/257 (64.59%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWT--AGRGVNIASD-MKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V +F P+ + Y++D +FRQ W D RL F G N L L+ M KIW PDT+ +NG+KS H +T PNK +R+ +G +LY+ RLT++A C M L DFPMD CPL+ GS+ YT ++V Y WT V +A D +L+Q+DL+ G T + G+++ + FHL+R +G FVIQ Y PC++ V++S VSFWLNRE+ R GVTTVLTMT L + AR LP+VAYATA+D+F+ + + +F+ + + Sbjct: 74 VTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNSMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYNPSDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIE 330
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|120756|sp|P10063.1|GBRA2_BOVIN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-2; AltName: Full=GABA(A) receptor subunit alpha-2; Flags: Precursor) HSP 1 Score: 226.868 bits (577), Expect = 2.568e-63 Identity = 117/257 (45.53%), Postives = 166/257 (64.59%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWT--AGRGVNIASD-MKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V +F P+ + Y++D +FRQ W D RL F G N L L+ M KIW PDT+ +NG+KS H +T PNK +R+ +G +LY+ RLT++A C M L DFPMD CPL+ GS+ YT ++V Y WT A V +A D +L+Q+DL G T + G+++ + FHL+R +G FVIQ Y PC++ V++S VSFWLNRE+ R GVTTVLTMT L + AR LP+VAYATA+D+F+ + + +F+ + + Sbjct: 74 VTSFGPVSDTDMEYTIDVFFRQKWKDERLKFKGPMNILRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLPGQSIGKETIKSSTGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIE 330
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|122132467|sp|Q08E50.1|GBRA5_BOVIN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-5; AltName: Full=GABA(A) receptor subunit alpha-5; Flags: Precursor) HSP 1 Score: 226.483 bits (576), Expect = 4.122e-63 Identity = 117/257 (45.53%), Postives = 167/257 (64.98%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSFSG-RKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASD-MKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V +F P+ + Y++D +FRQSW D RL F G + L L+ + KIW PDT+ +NG+KS H +TTPNK +RL +G +LY+ RLTI A C M L DFPMD CPL+ GS+ Y ++VIY WT G + V +A D +L+Q+ L+ G + G+++ + FHL+R +G FVIQ Y PC++ V++S VSFWLNRE+ R GVTTVLTMT L + AR LP+VAYATA+D+F+ + + +F+ + + Sbjct: 81 VTSFGPVSDTEMEYTIDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLYTMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVIYVWTNGTAKSVVVAEDGSRLNQYHLMGQTVGTENISTSTGEYTIMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIE 337
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|120784|sp|P22300.1|GBRG2_BOVIN (RecName: Full=Gamma-aminobutyric acid receptor subunit gamma-2; AltName: Full=GABA(A) receptor subunit gamma-2; Flags: Precursor) HSP 1 Score: 226.098 bits (575), Expect = 8.454e-63 Identity = 111/250 (44.40%), Postives = 158/250 (63.20%), Query Frame = 0 Query: 1027 PLICISVSYSMDCYFRQSWVDRRLSF-SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWT-AGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 P+ I++ Y++D +F Q+W DRRL F S K L L+ M+ KIW PDT+ N +K+ H ITTPN+ +R++ +GRVLY+ RLTI A CQ+ L +FPMD+ CPL+ S+GY +++YQW + V+ +L QF + G + + V F L R MG F IQ Y PC L+VV+SWVSFW+N++A R SLG+TTVLTMT L AR LP+V+Y TA+D FV + F+ +F+ + + Sbjct: 103 PVNAINMEYTIDIFFGQTWYDRRLKFNSTIKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAECQLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVSDTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMTVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFSALVE 352
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1325328667|ref|XP_023346187.1| (gamma-aminobutyric acid receptor alpha-like [Eurytemora affinis]) HSP 1 Score: 463.381 bits (1191), Expect = 1.247e-144 Identity = 256/490 (52.24%), Postives = 317/490 (64.69%), Query Frame = 0 Query: 1015 LVKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ-QYMEEISFIGNNSGYISANSE---PQINDFQAEPDEYLEQAFLHHNHYHTSTPSFQDVTYRTLPMVGNHLTGNGKAKTLTFEDNPG----LPPQERNILNHHPYGTFYYSKKNGRSGKRPNVLRKSQSMVSKASSQANLANGRRRIRSQNGTSWNSLGRSMTEVTDLSNTGSKVDRWNSAGGELSDLDQCGCKRCVTRALNNPEQALNSVSRIDKISRVVFPLIFLVI 1495 L+ V + P+ + +SY MDCYFRQSWVD+RL+F+G K+ LALSIEMLRKIWKPDT++YNG+KSYLHTITTPN+F+RLFPNGRVLYSQRLTI+A+C M+L FPMDKQ+CPL+IGSFGYT +DV Y+WT GRGVNIASDMKLSQFDLISTPTG TT N+G HSTLIV FHLQRHMG+FVIQVYGPC+LLVVISWVSFWLNREATSDRISLG+TTVLTMTFLGLEAR DLP+V Y TALDYFVFISF IF+TV Q + + +G+ Y+ + PQ+ + + Y Q + + T +LP G+ + +D L + N LNHHP + +N +KS S + + I + G +V +L T + + E +QC CKRCVTRA N+ ++ LNSVS+ID+ISR+VFP +L I Sbjct: 63 LIDVNMQVRSMGPISEMDMSYIMDCYFRQSWVDKRLAFTGYKDALALSIEMLRKIWKPDTFMYNGKKSYLHTITTPNRFVRLFPNGRVLYSQRLTIRATCIMNLEGFPMDKQKCPLRIGSFGYTADDVTYKWTTGRGVNIASDMKLSQFDLISTPTGTETTLRNQGIHSTLIVSFHLQRHMGDFVIQVYGPCILLVVISWVSFWLNREATSDRISLGITTVLTMTFLGLEARKDLPKVPYPTALDYFVFISFTYIFSTVVQFGIVHHFTKVGSGEYYLEELEDEPCPQVEKRKRVREIYATQQQILDLLLDSCT---------SLPTHNGKSCGSNGPSSFKMQDKESSSATLSSLDFNFLNHHP------TARN---------FKKSFQTDSAGCTGGGSLDTLHDIPDNIPGPARAQGAQQLQVRELGLT-RDIFLLENEINERETPEQCVCKRCVTRAFNDSDKCLNSVSKIDRISRIVFPSTYLGI 527 HSP 2 Score: 81.6481 bits (200), Expect = 6.031e-12 Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 0 Query: 702 RNQARNRNQTADNVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDM 758 ++ A+ NQTA NV+ LLDNLLKDYDN+LRP+ GG ++++NMQVRSMGPISE+DM Sbjct: 25 KDLAKLANQTAYNVSKLLDNLLKDYDNNLRPDFGGPSTLIDVNMQVRSMGPISEMDM 81
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1279716947|ref|XP_022902907.1| (gamma-aminobutyric acid receptor alpha-like [Onthophagus taurus]) HSP 1 Score: 402.905 bits (1034), Expect = 1.143e-122 Identity = 232/497 (46.68%), Postives = 286/497 (57.55%), Query Frame = 0 Query: 1027 PLICISVSYSMDCYFRQSWVDRRLSFSG--RKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKG-----------QHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSEPQINDFQAEPDEYLEQAFLHHNHYHTSTPSFQDVTYRTLPMVGNHLTGNGKAKTLTFEDNPGLPPQERNILNHHPYGTFYYSKKNGRSGKRPNVLRKSQSMVSKASSQANLANGRRRIRSQNGTSWNSLGRSMTEVTDLSNTGSKVDRWNSAGGELSDLDQCGCKRCVTRALNNPEQALNSVSRIDKISRVVFPLIFLVINIVYWYKYLNHSERI 1510 P+ I ++YSMDCYFRQSW+DRRL+F+G + LALSI ML +IWKPDTY YNG++SYLHTITTPNKF+RL+ +GRVLYS RLTIKA C M+L DFPMD QRCPL+ GSFGYT DVIY+W R + A DMKLSQFDLI TPT N T + G + S L+V FHLQRHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALDYFVF+SF IFAT+ Q + F SG N+E + E D E TS D +P+ LP + N +N + ++ N S K NV S+ M KA S ++ + +R+ + R+NS VS+IDK SR+VFP++FL INI YWY YL+ ++R+ Sbjct: 81 PISEIDMTYSMDCYFRQSWIDRRLAFTGGDKDTLALSISMLARIWKPDTYFYNGKQSYLHTITTPNKFVRLYRDGRVLYSSRLTIKAGCLMNLEDFPMDIQRCPLRFGSFGYTTRDVIYKWNRARQIVTAEDMKLSQFDLIGTPTANYTDAITGGDTLSDVTTNNTEFSMLLVSFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDYFVFVSFTFIFATIIQFAVVHY-FTKYGSGECYFNAEMLFDSSSEEEDCNSEICKCISTSATTSEVGQNDFLIEVIPLTP-----------------CTLPSKSGNRMNRN-----WHCWMN--SSKETNVSSISKPMTQKAPSTSHREHCKRKKKKA------------------------TPRFNS------------------------------VSKIDKFSRIVFPMLFLAINIFYWYSYLSRTKRV 498 HSP 2 Score: 75.0998 bits (183), Expect = 6.573e-10 Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 0 Query: 701 VRNQARNRNQTADNVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCAS 761 +RN ++ N N++ LLDNLL+ YDNS+RPN GG P ++E+++ VRSMGPISE+DM S Sbjct: 32 LRNNPQHNNH--KNISILLDNLLRGYDNSIRPNFGGSPAIIEVDIMVRSMGPISEIDMTYS 90
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1325331580|ref|XP_023347650.1| (gamma-aminobutyric acid receptor alpha-like, partial [Eurytemora affinis]) HSP 1 Score: 396.356 bits (1017), Expect = 1.397e-121 Identity = 190/254 (74.80%), Postives = 218/254 (85.83%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V + P+ + +SYSMD YFRQ+W+DRRLSF+G + LALS EML+KIWKPDT++YNG K+Y+HTIT PN+F+RLF +GRVLYSQRLTI A+C MDL DFPMDKQ CPLQ+GSFGY I D+ Y+W+ GVNIA+DMKLSQFDLIST TGNSTT LN G HSTL+V FHL RHMG+FVIQVYGPC+LLVVISWVSFWLNREATSDRISLG+TTVLTMTFLGLEAR DLP+V Y TALDYFVFISF+ IF TV Q Sbjct: 32 VRSMGPISELDMSYSMDSYFRQTWIDRRLSFTGFQGALALSNEMLQKIWKPDTFVYNGIKAYVHTITKPNRFVRLFADGRVLYSQRLTISATCLMDLKDFPMDKQMCPLQLGSFGYGIEDIKYEWSKENGVNIAADMKLSQFDLISTLTGNSTTKLNDGLHSTLLVHFHLHRHMGDFVIQVYGPCILLVVISWVSFWLNREATSDRISLGITTVLTMTFLGLEARKDLPKVPYPTALDYFVFISFLYIFFTVIQ 285
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1339051459|ref|XP_023714027.1| (gamma-aminobutyric acid receptor alpha-like isoform X3 [Cryptotermes secundus]) HSP 1 Score: 396.741 bits (1018), Expect = 4.782e-121 Identity = 184/249 (73.90%), Postives = 214/249 (85.94%), Query Frame = 0 Query: 1027 PLICISVSYSMDCYFRQSWVDRRLSFSGRK-NLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 P+ + ++YSMDCYFRQSWVDRRL+F G K LALSI ML++IWKPDTY YNG++SYLHTITTPNKF+RL+ +GRVLYS RLTIKA C M+L DFPMD QRCPL+ GSFGYT NDV+Y+W R V+IA DMKLSQFDLI+TP+ N T L G++S LIV FHLQRHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q Sbjct: 7 PISEVDMTYSMDCYFRQSWVDRRLAFQGNKETLALSISMLQRIWKPDTYFYNGKQSYLHTITTPNKFVRLYQDGRVLYSSRLTIKAGCPMNLEDFPMDTQRCPLKFGSFGYTTNDVVYRWNVARKVDIAVDMKLSQFDLIATPSANQTDALQSGEYSMLIVSFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATIIQ 255
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1339051453|ref|XP_023714023.1| (gamma-aminobutyric acid receptor alpha-like isoform X1 [Cryptotermes secundus] >gi|1339051455|ref|XP_023714024.1| gamma-aminobutyric acid receptor alpha-like isoform X1 [Cryptotermes secundus] >gi|1330900606|gb|PNF27091.1| hypothetical protein B7P43_G08556 [Cryptotermes secundus]) HSP 1 Score: 397.897 bits (1021), Expect = 4.300e-120 Identity = 185/254 (72.83%), Postives = 216/254 (85.04%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRK-NLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V + P+ + ++YSMDCYFRQSWVDRRL+F G K LALSI ML++IWKPDTY YNG++SYLHTITTPNKF+RL+ +GRVLYS RLTIKA C M+L DFPMD QRCPL+ GSFGYT NDV+Y+W R V+IA DMKLSQFDLI+TP+ N T L G++S LIV FHLQRHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q Sbjct: 94 VRSMGPISEVDMTYSMDCYFRQSWVDRRLAFQGNKETLALSISMLQRIWKPDTYFYNGKQSYLHTITTPNKFVRLYQDGRVLYSSRLTIKAGCPMNLEDFPMDTQRCPLKFGSFGYTTNDVVYRWNVARKVDIAVDMKLSQFDLIATPSANQTDALQSGEYSMLIVSFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATIIQ 347 HSP 2 Score: 66.2402 bits (160), Expect = 3.752e-7 Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 0 Query: 714 NVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCAS 761 N++ +LD LL+ YDN++RP+ GG P +VE+++ VRSMGPISEVDM S Sbjct: 61 NISEILDGLLRGYDNNVRPDFGGPPAVVEVDIMVRSMGPISEVDMTYS 108
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1339051461|ref|XP_023714028.1| (gamma-aminobutyric acid receptor alpha-like isoform X4 [Cryptotermes secundus]) HSP 1 Score: 394.045 bits (1011), Expect = 4.790e-120 Identity = 183/242 (75.62%), Postives = 210/242 (86.78%), Query Frame = 0 Query: 1034 SYSMDCYFRQSWVDRRLSFSGRK-NLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 +YSMDCYFRQSWVDRRL+F G K LALSI ML++IWKPDTY YNG++SYLHTITTPNKF+RL+ +GRVLYS RLTIKA C M+L DFPMD QRCPL+ GSFGYT NDV+Y+W R V+IA DMKLSQFDLI+TP+ N T L G++S LIV FHLQRHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q Sbjct: 11 TYSMDCYFRQSWVDRRLAFQGNKETLALSISMLQRIWKPDTYFYNGKQSYLHTITTPNKFVRLYQDGRVLYSSRLTIKAGCPMNLEDFPMDTQRCPLKFGSFGYTTNDVVYRWNVARKVDIAVDMKLSQFDLIATPSANQTDALQSGEYSMLIVSFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATIIQ 252
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|645014755|ref|XP_008206162.1| (PREDICTED: GABA-gated ion channel GRD isoform X2 [Nasonia vitripennis]) HSP 1 Score: 385.571 bits (989), Expect = 5.151e-117 Identity = 187/287 (65.16%), Postives = 227/287 (79.09%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSF-SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSEPQINDFQAEPDE 1307 V + P+ + ++YSMDCYFRQSWVDRRL+F SG++ LALSI ML +IWKPDTY YNG++SYLHTIT+PNKF+RL+ +GRVLYS RLTIKA+C M+L DFPMD QRCPL+ GS+GYT DVIY+W + R V IA DMKLSQFDL+ PT N+T ++S L+V FHL+RHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q+ F SG NSE + ND ++ E Sbjct: 84 VRSMGPISEVDMTYSMDCYFRQSWVDRRLAFQSGKETLALSISMLARIWKPDTYFYNGKQSYLHTITSPNKFVRLYQDGRVLYSSRLTIKAACPMNLEDFPMDTQRCPLKFGSYGYTTRDVIYKWNSARQVAIAHDMKLSQFDLVGNPTANATDSTLSQKYSMLLVSFHLKRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFGFIFATII-QFAVVHYFTKYGSGECYFNSETE-NDVESSDSE 368 HSP 2 Score: 73.9442 bits (180), Expect = 1.130e-9 Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 0 Query: 704 QARNRNQTADNVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCAS 761 + R ++ N++ LLDNLL+ YDNS+RPN GG P +VE+++ VRSMGPISEVDM S Sbjct: 41 RERTQSNNHGNISELLDNLLRGYDNSVRPNFGGPPAVVEVDIMVRSMGPISEVDMTYS 98
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1228385103|ref|XP_021954170.1| (gamma-aminobutyric acid receptor alpha-like [Folsomia candida]) HSP 1 Score: 385.571 bits (989), Expect = 8.158e-117 Identity = 180/255 (70.59%), Postives = 217/255 (85.10%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRK--NLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V + P+ + ++YSMDCYFRQ+WVD+RL + K LALSI ML KIWKPDTY YNG++SYLHTITTPNKF+RL +GRVLYS RLT+KASC M+L DFPMD QRCPL++GSFGYTI+DV+Y+W A R V+IA DMK+SQFDLISTP+GN T + G++STL + F+LQRHMGNF+IQVYGPC LLV++SWVSFWLNREAT+DR+SLGVTTVLTMTFLGLEARTDLP+V+Y TALD+FVF+SF IFAT+ Q Sbjct: 57 VRSMGPISEVDMTYSMDCYFRQTWVDKRLEYHSTKGDTLALSISMLEKIWKPDTYFYNGKQSYLHTITTPNKFVRLKMDGRVLYSSRLTVKASCPMNLEDFPMDTQRCPLKLGSFGYTISDVLYRWNANRTVDIALDMKMSQFDLISTPSGNGTEKMKLGEYSTLDINFYLQRHMGNFLIQVYGPCTLLVILSWVSFWLNREATADRVSLGVTTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFAFIFATIIQ 311 HSP 2 Score: 78.5666 bits (192), Expect = 4.604e-11 Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = 0 Query: 700 FVRNQAR--NRNQTADNVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCASSMV---------KNEYEAILLDPLSMSLSIL 783 F+RN++ +N NV+ LLDNLL+ YDNS+RP+ GG P +VEI++ VRSMGPISEVDM S + EY + D L++S+S+L Sbjct: 8 FIRNKSDPGYKNNNHKNVSELLDNLLRGYDNSIRPDFGGPPTIVEIDIMVRSMGPISEVDMTYSMDCYFRQTWVDKRLEYHSTKGDTLALSISML 102
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1351617805|ref|XP_024083752.1| (gamma-aminobutyric acid receptor alpha-like isoform X2 [Cimex lectularius] >gi|1351617807|ref|XP_024083756.1| gamma-aminobutyric acid receptor alpha-like isoform X2 [Cimex lectularius]) HSP 1 Score: 384.03 bits (985), Expect = 1.081e-116 Identity = 178/249 (71.49%), Postives = 213/249 (85.54%), Query Frame = 0 Query: 1027 PLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 P+ + ++YSMDCYFRQ+WVD RL++SG K+ LALSI ML++IWKPDTY YNG++SYLHTIT+PNKF+RLF +GRVLYS RLTIKA C M+L +FPMD QRCPL+ GSFGYTI DV+Y+W G V+IA DMKLSQFDLI P+ N T L G++S L+V FHL+RHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q Sbjct: 7 PISEVDMTYSMDCYFRQTWVDTRLAYSGHKDTLALSITMLKRIWKPDTYFYNGKQSYLHTITSPNKFVRLFQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLKFGSFGYTIKDVVYKWKMGTEVDIAKDMKLSQFDLIGNPSANQTDQLKSGRYSMLLVSFHLRRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFGFIFATIIQ 255
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|780701573|ref|XP_011702170.1| (PREDICTED: gamma-aminobutyric acid receptor alpha-like isoform X1 [Wasmannia auropunctata] >gi|780701577|ref|XP_011702171.1| PREDICTED: gamma-aminobutyric acid receptor alpha-like isoform X1 [Wasmannia auropunctata]) HSP 1 Score: 385.956 bits (990), Expect = 2.391e-116 Identity = 180/251 (71.71%), Postives = 211/251 (84.06%), Query Frame = 0 Query: 1027 PLICISVSYSMDCYFRQSWVDRRLSF-SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTF--LNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 P+ + ++YSMDCYFRQSWVDRRL+F G++ LALSI ML KIWKPDTY YNG+ SYLHTIT+PNKF+RL+ NGRVLYS RLTIKA C M+L DFPMD Q+CPLQ GSFGYT DVIY+W + R V IA DMKLSQFDL++ PT N +T + ++S L+V FHLQRHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q Sbjct: 76 PISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLAKIWKPDTYFYNGKHSYLHTITSPNKFVRLYQNGRVLYSSRLTIKAGCPMNLEDFPMDTQKCPLQFGSFGYTTRDVIYKWNSARQVAIAEDMKLSQFDLVANPTANHSTASGFSHAEYSILLVYFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATIIQ 326 HSP 2 Score: 72.7886 bits (177), Expect = 2.850e-9 Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 0 Query: 682 LAVHSQSPKIASDTKKVPFVRNQARNRNQTADNVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCAS 761 LA S +AS K VR + ++ N + N++ LLDNLL+ YDNS+RP+ GG P VE+++ VRSMGPISEVDM S Sbjct: 9 LANFITSTFLASANAKTS-VRQRTQSNNHS--NISDLLDNLLRGYDNSIRPDFGGPPATVEVDIMVRSMGPISEVDMTYS 85 The following BLAST results are available for this feature:
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold456_size166325:29522..90418- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold456_size166325-snap-gene-0.27 ID=maker-scaffold456_size166325-snap-gene-0.27|Name=gaba-gated ion channel grd isoform x2|organism=Tigriopus kingsejongensis|type=gene|length=60897bp|location=Sequence derived from alignment at scaffold456_size166325:29522..90418- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'gaba-gated ion channel grd isoform x2' has the following synonyms
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