gaba-gated ion channel grd isoform x2, maker-scaffold456_size166325-snap-gene-0.27 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000002942 (supercontig:LSalAtl2s:LSalAtl2s168:571962:593342:-1 gene:EMLSAG00000002942 transcript:EMLSAT00000002942 description:"maker-LSalAtl2s168-augustus-gene-6.6") HSP 1 Score: 144.436 bits (363), Expect = 1.901e-36 Identity = 94/300 (31.33%), Postives = 163/300 (54.33%), Query Frame = 0 Query: 1037 MDCYFRQSWVDRRLSFSGR-KNLALS-IEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGS----------------------FGYTINDVIYQWTAGRGVNIASDMKLSQFDLIST-PTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ----QYM-----EEISFIGNNSG-YISANSEPQINDF 1301 +D Y RQ W D RL+ G + + L+ +++ +WKP+ Y N + + +T PN +R+ P G +LY RL +K SC M+LS FP+D+Q C ++I S T ++I +W + ++I+ ++K+ QF++ + P+ TF + G +S L+ HL+R +G ++Q Y P +L+VVISWVSFW++ E+ + R +LGVTT+LT++ + + ++P V+Y A+D ++ IFA + + YM ++ + G SG I N + ++ DF Sbjct: 54 IDLYLRQHWFDSRLNHPGLLEPMDLNDPNLVKALWKPEVYFPNAKDAEFQYVTVPNVLVRIDPGGAILYMLRLKLKFSCMMELSKFPLDEQYCTMEIASCKIIIHKGIISTFKNHNFFSLIVSKTTKELILRWKDTKPIDISKEVKMPQFEISTVIPSICQETF-HIGNYSCLLAQLHLKRSLGFHMVQSYIPTILIVVISWVSFWMDVESVAGRTTLGVTTLLTVSSKASDVQAEVPLVSYVKAIDIWMGACTAFIFAALLEFTFVNYMWRRGKKKTMYFGIESGSRILENQKDKVEDF 352
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000004920 (supercontig:LSalAtl2s:LSalAtl2s259:1063168:1099810:-1 gene:EMLSAG00000004920 transcript:EMLSAT00000004920 description:"maker-LSalAtl2s259-augustus-gene-11.12") HSP 1 Score: 127.872 bits (320), Expect = 2.625e-32 Identity = 57/167 (34.13%), Postives = 97/167 (58.08%), Query Frame = 0 Query: 1066 RKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKL-SQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGV 1231 +K+W PDT+ N ++ H I PN ++R+FPNG +LYS R+++ SC M L FP+D Q C L++ S+G+T++DV+Y W V ++ L F L G++S L V +R + ++I +Y P +++V++SW+SFWL+ ++++ L V Sbjct: 5 KKVWMPDTFFRNEKEGKFHNIIQPNLYIRVFPNGDILYSIRISLTLSCPMSLELFPLDTQTCFLRVASYGWTVDDVVYNWKVPEPVQFVKNLFLPGGFGLHXFSDAYCNVKTATGEYSCLTVIMTFRRQLSYYIITIYIPTLMIVMVSWMSFWLDHKSSTKHFCLRV 171
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000001321 (supercontig:LSalAtl2s:LSalAtl2s1223:193582:196888:1 gene:EMLSAG00000001321 transcript:EMLSAT00000001321 description:"snap_masked-LSalAtl2s1223-processed-gene-2.46") HSP 1 Score: 118.627 bits (296), Expect = 7.656e-29 Identity = 70/236 (29.66%), Postives = 124/236 (52.54%), Query Frame = 0 Query: 1045 WVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWT----AGRGVNIAS-DMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 W D RL+ S K L L + W PD+Y ++ + S I TP +R+ P+ + Y++ + + C M ++PMD Q C L++ SFGY +N + Y W + + I + D++++ + +P G + S L + L+RH+G + Q Y P ++ V I+W+SF + + R+ L VTT+LT+ + R+ PQV+Y ALD +VF+ + +F+++ + Sbjct: 10 WADLRLNTSEMKRPLELEPTSISDFWTPDSYFHHVKASNEVKIMTPVASLRVRPDKIIQYTKIILVTLGCPMSFYNYPMDNQICRLELQSFGYDMNLINYTWMRPPQMKKDIIIDNHDVEIADYTFEYSPEG--------IRFSGLGIRIELKRHLGFHITQSYIPSIIFVAIAWMSFHVPSDVVPGRMVLSVTTLLTLISMFNSVRSLTPQVSYMKALDLWVFVCLVFVFSSLAE 237
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000009520 (supercontig:LSalAtl2s:LSalAtl2s612:286575:292619:1 gene:EMLSAG00000009520 transcript:EMLSAT00000009520 description:"maker-LSalAtl2s612-augustus-gene-3.13") HSP 1 Score: 114.39 bits (285), Expect = 1.387e-28 Identity = 60/179 (33.52%), Postives = 97/179 (54.19%), Query Frame = 0 Query: 1115 MDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDL--ISTPTGNSTT-----------------FLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 MDL +P+D+Q C ++I S+G+T +D+IY+W + V D+ L +F L ST NS T F N G++S L + +R +++ +Y P +LV+ISWVSFWL+ ++ R++LGVTT+LTM+ LP VAY A+D + + +F+ + + Sbjct: 1 MDLKLYPLDRQVCEMRIASYGWTTDDLIYRWKSKDPVQFVQDLNLPRFKLESFSTSYCNSKTNTGSVILYTEFPIVKLVFFNSGEYSCLKINLVFKREFSYYLLTIYVPSCMLVIISWVSFWLDSKSVPARVALGVTTLLTMSTQTAGVNRSLPPVAYTKAIDVWSGACVIFVFSALLE 179
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000002530 (supercontig:LSalAtl2s:LSalAtl2s14:125553:213163:-1 gene:EMLSAG00000002530 transcript:EMLSAT00000002530 description:"maker-LSalAtl2s14-augustus-gene-3.12") HSP 1 Score: 100.138 bits (248), Expect = 4.966e-23 Identity = 48/139 (34.53%), Postives = 80/139 (57.55%), Query Frame = 0 Query: 1060 LSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDL---------ISTPTGNSTTFLNKGQHSTLIVGFH 1189 L++ +K+W PDT+ N ++ H I PN ++R+FPNG VLYS R+++ +C M+L +P+D+Q+C L++ S+G+T +D+ Y W V I D+ L +F L I T TG + N + +++I H Sbjct: 91 LTMTDAKKVWMPDTFFRNEKEGRFHNILVPNVYIRIFPNGDVLYSIRVSLTLACPMNLKLYPLDRQQCSLRVASYGWTTDDLQYIWKPSEPVQIVKDLHLPRFTLEKYISDYCNIKTNTGAGSH--NGSEPNSMISKLH 227
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000011250 (supercontig:LSalAtl2s:LSalAtl2s76:68800:74845:-1 gene:EMLSAG00000011250 transcript:EMLSAT00000011250 description:"maker-LSalAtl2s76-augustus-gene-0.8") HSP 1 Score: 99.7525 bits (247), Expect = 1.232e-22 Identity = 58/251 (23.11%), Postives = 115/251 (45.82%), Query Frame = 0 Query: 1036 SMDCYFRQSWVDRRLSF------SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHS------TLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 +++ R W D R++ R + + ++ W PD +I + + T +R++ + V YS RL +C+MD FP+D+Q C ++ SFG+T +++ W G NI ++ L+QFD+ + T + H LI+ HL+R +G ++Q Y P ++ V ++W+S +++ E+ R ++P+V+Y + LD ++ +F+ + + Sbjct: 76 TLETSLRLYWEDPRIAVLPSALSESRNYVTFNPKVAEYFWIPDIFIDKSKAVRVPTYFVKPASLRVYNDSTVRYSSRLNFDVACEMDFHRFPVDEQLCEIKFESFGFTTEQLMFSWKKGSS-NINQNISLAQFDMNKSLNCLYFTHIYNTSHPFMSIFVGLIMKIHLRREIGYHIVQTYIPSMIFVFVAWLSLFISPESIPAMFG--------------AVRNNVPKVSYVSYLDIWMVACIFFVFSCILE 311
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000003313 (supercontig:LSalAtl2s:LSalAtl2s181:399664:401012:-1 gene:EMLSAG00000003313 transcript:EMLSAT00000003313 description:"maker-LSalAtl2s181-augustus-gene-4.10") HSP 1 Score: 90.1225 bits (222), Expect = 6.301e-19 Identity = 69/273 (25.27%), Postives = 126/273 (46.15%), Query Frame = 0 Query: 1031 ISVSYSMDCYFRQSWVDRRLSF-------------SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLF--PNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIY------------QWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFH--LQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 + S +++ YF WVD+RL ++++A++ +++ K+W D I N S T++ +K ++ N ++YS I C+M + FPMD Q C Q+GSF Y +N +I+ Q T VN D++ + T +L G + + + GF L R + +++ Y P L V++SW+SF +N E R++L VT L + + +T+ P+ TA++ +V + +F + + Sbjct: 70 VDFSITLNAYFYVKWVDKRLRILSYNSSDINRKPHMKKQSIAINSKIIEKLWLXDVEILN--LSSFETLSVLSKLEGVWIGENSELMYSLATRITIICRMKFNAFPMDIQVCKFQVGSFNYDMNKMIFFNDFIPSKQNSQQTTLDYQVNF-QDLR-----------PDETHYLALGMNYS-VAGFQIILTRKVSFYIVTYYLPSALFVLVSWISFLVNPEVIPGRMTLLVTIFLVLINIFNTIQTNSPKADGLTAIEAWVIACIIFVFGALGE 327
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000003185 (supercontig:LSalAtl2s:LSalAtl2s176:68925:134641:-1 gene:EMLSAG00000003185 transcript:EMLSAT00000003185 description:"maker-LSalAtl2s176-augustus-gene-1.7") HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-18 Identity = 61/272 (22.43%), Postives = 122/272 (44.85%), Query Frame = 0 Query: 1034 SYSMDCYFRQSWVDRRLSFSGRKN-----------LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWT--------AGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFH--LQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIG 1284 S + YF W + RL +S + + +++E++ ++W P+ +IYN + + + + + + + +LYSQ I C M FP+D QRC Q+GS+ Y + + + R + + D+++ + + T G +S + GF L R++ +++I Y P L VV+SW+SF + R++L +T L + + T+ P+ TA++ ++ + +F + + EE +G Sbjct: 76 SVTFSSYFNVLWKEPRLQYSDKFTKEVNNSSPETLIPVNLELVNELWLPNIFIYNLKTFKVVEVLSKHAGLWITSEKDILYSQATHITFICPMRFDAFPLDTQRCKFQVGSYSYDDTKMRFAGSPRVTGYAEXSRAIVLDYDIQIKSLKMKDMIYHSGTL----GNYS--LAGFEMVLHRYVSHYIITYYLPSGLFVVVSWISFVVPPTVIPGRMALLITLFLVLVNIFNSVTTNTPKAEGLTAIEAWMLACILFVFGALVEYAEEEDESMG 341
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000011211 (supercontig:LSalAtl2s:LSalAtl2s765:133774:155316:1 gene:EMLSAG00000011211 transcript:EMLSAT00000011211 description:"maker-LSalAtl2s765-snap-gene-1.16") HSP 1 Score: 85.1149 bits (209), Expect = 9.774e-18 Identity = 65/265 (24.53%), Postives = 108/265 (40.75%), Query Frame = 0 Query: 1040 YFRQSWVDRRLSF-----------SGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGS---------FGYTINDVIYQWTAGRGVNIASDMKLSQFDLIST---------PTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 YF SW+D RL +G KN + +S LR IW P+ IY K + +R+ N + Y + I SC+M D+P+D C Q+GS +G + ++ + + + V +S Q S P + + L G ++ L R +++QVY P + VV SWVSF + E R++L VT L + + R P + A+D ++ + +F + + Sbjct: 1 YFGVSWLDPRLKINSSASEWSEARTGPKNEVNISPGSLRYIWYPELEIYGLEKFGRQRVLKEMSGVRIRKNKTIHYELGVRITISCRMMFDDYPLDAHTCQFQVGSCKYQDITRPWGKSTYQLLSDYDSNKTVQCSSSYVYDQIRQRSLQHYITFEELPEKDRSVVLPSGTYAACGFQIQLVRKQMQYLVQVYLPSCMFVVTSWVSFLIKPEVVPGRMALLVTLFLVLINIFNSVRERAPISSKLNAIDLYLVVCIFLVFGALME 265
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Match: EMLSAG00000010518 (supercontig:LSalAtl2s:LSalAtl2s69:18020:76641:-1 gene:EMLSAG00000010518 transcript:EMLSAT00000010518 description:"maker-LSalAtl2s69-snap-gene-1.19") HSP 1 Score: 86.6557 bits (213), Expect = 1.376e-17 Identity = 82/363 (22.59%), Postives = 142/363 (39.12%), Query Frame = 0 Query: 1032 SVSYSMDCYFRQSWVDRRL-----------SFSGRKNLALSIEMLR-KIWKPDTYIYN----GRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQ--WTAGRGVNIASDMKLSQF-DLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMT--FLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSEPQINDFQAEPDEYLEQAFLHHNHYHTSTPSFQDVTYRTLPMVGNHL----TGNGKAKTLTFEDNPGLPPQERNILNHH 1369 S + S+ YF +W + RL S +G N +L + W PD IY G K L +++ +R+ N + Y+ + +K SC+M ++P DK +C LQ+GS+ YT V +T G + L F P L G +S +R + Q+Y PC+L V +SWVSF + E R+ + +T L + F + + +P + A+D ++ + +F + + + + +++ Y+ + Y S SF D+ LP NH N + T+T +++ G N +H Sbjct: 79 SQTLSIPMYFSVAWKEPRLWINETDPAWNESITGPTNQVNENPLLMDEFWTPDLEIYGLEDFGAKRVLKSMSG----LRVGKNKVIEYNSMVNVKISCRMLFDNYPFDKHKCYLQVGSYYYTEETVTCDSTFTDPLGNEPSRQRNLQYFIKFQDLPPEEKKMELLSGNYSACGFQITFERKRLQLIYQIYLPCILFVAVSWVSFLVRPECVPGRMGMLITLFLVLVNIFNTVRSSAPVPASSRLNAIDSYLVVCICMVFLALFEYAFLLFIIKSRDQKLARKKRKSVVSNLSRSTAVYVPPSEELEEFYKKSPNSFFDI---RLPFSSNHYENKRENNERTVTVTNDNSGGNKADTTNAQENH 434
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|57012755|sp|Q24352.1|GBRAL_DROME (RecName: Full=Gamma-aminobutyric acid receptor alpha-like; AltName: Full=GABA(A) receptor alpha-like and glycine receptor-like subunit of Drosophila; Short=GRD; Flags: Precursor) HSP 1 Score: 287.345 bits (734), Expect = 1.316e-81 Identity = 158/331 (47.73%), Postives = 199/331 (60.12%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPM-----------------------DKQRCPLQIGS------------FGYTINDVIYQWTAGR---------------------------------GVNIASDMKLSQFDLISTPTGNSTTFLN---------KGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V + P+ + ++YSMDCYFRQSWVD+RL+F G ++ LALS+ ML +IWKPDTY YNG++SYLHTITTPNKF+R++ NGRVLYS RLTIKA C M+L+DFPM +K+R P+ I + D++Y+ A R G + D +T STT L+ ++S L+V FHLQRHMGNF+IQVYGPC LLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V+Y TALD+FVF+SF IFAT+ Q Sbjct: 141 VRSMGPISEVDMTYSMDCYFRQSWVDKRLAFEGAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLTIKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAEDMKLSQFDLVDCPAGNLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQ 471 HSP 2 Score: 69.707 bits (169), Expect = 1.377e-10 Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 0 Query: 714 NVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCAS 761 N++ LLDNLL+ YDNS+RP+ GG P +E+++ VRSMGPISEVDM S Sbjct: 108 NISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYS 155 HSP 3 Score: 57.7658 bits (138), Expect = 6.780e-7 Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = 0 Query: 1475 NSVSRIDKISRVVFPLIFLVINIVYWYKYLNHSERI 1510 NSVS+ID+ SR+VFPL+F++IN+ YWY YL+ S RI Sbjct: 642 NSVSKIDRASRIVFPLLFILINVFYWYGYLSRSSRI 677
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|143811394|sp|P20237.2|GBRA4_BOVIN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-4; AltName: Full=GABA(A) receptor subunit alpha-4; Flags: Precursor) HSP 1 Score: 256.914 bits (655), Expect = 1.310e-72 Identity = 170/520 (32.69%), Postives = 255/520 (49.04%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGR-KNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASDMK-LSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSEPQINDFQAEPDEYLEQAFLHHNHYHTS-----------------TPSFQDVTYRTLPMVGNHLTGNGKAKTLTFEDNPGLPPQERNILNHHPYGTFYYSKKNGRSGKRPNVLRKS---------QSMVSKASSQANLANGRRRIRSQNGTSWNSLGRSMTEVTDLSNTGSKVDRWNSAGGELSDLDQCGCKRCVTRALNNPEQALNSVSRIDKISRVVFPLIFLVINIVYWYKYLN 1505 VK V +F P+ + + Y+MD +FRQ+W+D+RL + G + L L+ M+ K+W PDT+ NG+KS H +T PNK R+ NG +LY+ RLTI A C M L DFPMD CPL+ GS+ Y +++IY WT G + V + + L Q+DLI + T G++ + V FHL+R MG F+IQ Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + I F N + + E P E L H T S DV RT VGNH + K+ T+ + + PQ + +P+ ++ + P+ L + Q V AS+Q + +RI+ T+ NS+G S G+LS T + P + + S+IDK +R++FP+ F N+VYW YL+ Sbjct: 74 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWIDKRLKYDGPIEILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEKSVEVPKESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSAL-------IEFAAVNY-FTNVQMEKAKRKTSKAPQEISAAPVLREKHPETPLQNTNANLSMRKRANALVHSESDVGSRT--DVGNH---SSKSSTVV-QGSSEATPQSYLASSPNPFSRANAAETISAARAIPSALPSTPSRTGYVPRQVPVGSASTQHVFGSRLQRIK----TTVNSIGTS---------------------GKLS----------ATTTPSAPPPSGSGTSKIDKYARILFPVTFGAFNMVYWVVYLS 544
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|341941084|sp|P16305.3|GBRA6_MOUSE (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor) HSP 1 Score: 251.906 bits (642), Expect = 5.073e-72 Identity = 135/357 (37.82%), Postives = 197/357 (55.18%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIA---SDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSEPQINDFQAEP------DEYLEQAFLHH--NHYHTSTPSFQDVTYRTLPMVGNHLTGNGKAKTLTFEDNPGLPP 1360 VK V +F P+ + + Y+MD +FRQ+W D RL F G L+L+ M+ KIW PDT+ NG+KS H +TTPNK RL NG +LY+ RLTI A C M L +FPMD CPL+ GS+ Y ++IY W G ++ L Q+DLI + T N G++ + V FHLQR MG F+IQ+Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + E + + + S +E Q P E L+ + H + YH + ++ TLP+V + ++T + P PP Sbjct: 58 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFKGPAEILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRLMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKTEIIYTWKKGPLYSVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALI-----EFAAVNYFTNLQSQKAERQAQTAATPPVAKSKASESLQAEIVVHSDSKYHLK----KRISSLTLPIVPSSEASKALSRTPILKSTPVSPP 405
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|206729865|sp|P48169.2|GBRA4_HUMAN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-4; AltName: Full=GABA(A) receptor subunit alpha-4; Flags: Precursor) HSP 1 Score: 254.603 bits (649), Expect = 1.035e-71 Identity = 167/503 (33.20%), Postives = 258/503 (51.29%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGR-KNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASDMK-LSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ----QYMEEISFIGNNSGYISANSEPQINDFQAE--PDEYLEQAFLHHNHYHTSTP---SFQDVTYRTLPMVGNHLTGNGKAKTLTFEDNPGLPPQERNILNHHPYGTFYYSKKNGRSGKRPNVLRKSQSMVSKASSQANLANGRRRIRSQNGTSWNSLGRSMTEVTDLSNTGSKVDRWNSAGGELSDLDQCGCKRCVTRALNNPEQALNSVSRIDKISRVVFPLIFLVINIVYWYKYLN 1505 VK V +F P+ + + Y+MD +FRQ+W+D+RL + G + L L+ M+ K+W PDT+ NG+KS H +T PNK R+ NG +LY+ RLTI A C M L DFPMD CPL+ GS+ Y +++IY WT G + V + + L Q+DLI + T G++ + V FHL+R MG F+IQ Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + + Y I E Q E P+ L+ + N + S DV RT VGNH + K+ T+ E + G P R+ L PN ++ + + ++++A + IR+ S+G + T GS++ R + ++ + G K T + P + + S+IDK +R++FP+ F N+VYW YL+ Sbjct: 74 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWIDKRLKYDGPIEILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEKSVEVPKESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNIQMEKAKRKTSKPPQEVPAAPVQREKHPEAPLQNTNANLNMRKRTNALVHSESDVGNRT--EVGNH---SSKSSTVVQESSKGTP---RSYL-----------------ASSPNPFSRANAAETISAARALPSASPTSIRTGYMPRKASVGSASTRHV----FGSRLQRIKTT---VNTIGATG-KLSATPPPSAPPPSGSGTSKIDKYARILFPVTFGAFNMVYWVVYLS 543
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|126302548|sp|Q16445.2|GBRA6_HUMAN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor) HSP 1 Score: 250.751 bits (639), Expect = 1.272e-71 Identity = 134/362 (37.02%), Postives = 196/362 (54.14%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIA---SDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATV-------------TQQYMEEISFIGNNSGYISANSEPQINDFQAEPDEYLEQAFLHHNHYHTSTPSFQDVTYRTLPMVGNHLTGNGKAKTLTFEDNPGLPP 1360 VK V +F P+ + + Y+MD +FRQ+W D RL F G L+L+ M+ KIW PDT+ NG+KS H +TTPNK R+ NG +LY+ RLTI A C M L +FPMD CPL+ GS+ Y +++IY W G ++ L Q+DLI + T N G++ + V FHLQR MG F+IQ+Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + TQ+ + F + IS +EP + PD + YH + +T +LP+V + + + P PP Sbjct: 58 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFGGPTEILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGPLYSVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQTQKAKRKAQFAAPPTVTISKATEPLEAEIVLHPD----------SKYHLK----KRITSLSLPIVSSSEANKVLTRAPILQSTPVTPP 405
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|232127|sp|P30191.1|GBRA6_RAT (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor) HSP 1 Score: 250.366 bits (638), Expect = 1.919e-71 Identity = 136/357 (38.10%), Postives = 197/357 (55.18%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIA---SDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSEPQINDFQAEP------DEYLEQAFLHH--NHYHTSTPSFQDVTYRTLPMVGNHLTGNGKAKTLTFEDNPGLPP 1360 VK V +F P+ + + Y+MD +FRQ+W D RL F G L+L+ M+ KIW PDT+ NG+KS H +TTPNK RL NG +LY+ RLTI A C M L +FPMD CPL+ GS+ Y +++IY W G ++ L Q+DLI + T N G++ + V FHLQR MG F+IQ+Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + E + + + S +E Q P E LE + H + YH + ++ TLP+V + ++T P PP Sbjct: 58 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFKGPAEILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRLMHNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGPLYSVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALI-----EFAAVNYFTNLQSQKAERQAQTAAKPPVAKSKTTESLEAEIVVHSDSKYHLK----KRISSLTLPIVPSSEASKVLSRTPILPSTPVTPP 405
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|13959377|sp|Q9D6F4.1|GBRA4_MOUSE (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-4; AltName: Full=GABA(A) receptor subunit alpha-4; Flags: Precursor) HSP 1 Score: 249.595 bits (636), Expect = 4.893e-70 Identity = 164/506 (32.41%), Postives = 250/506 (49.41%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGR-KNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASDMK-LSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSEPQINDFQAEPDEYLEQAFLHHNHYHTS---TPSFQDVTYRTLPMVGNHL-------TGNGKAKTLTFEDNPGLPPQERNILNHHPYGTFYYSKKNGRSGKRPNVLRKSQSMVSKASSQANLA-NGRRRIRSQNGTSWN-SLGRSMTEVTDLSNTGSKVDRWNSAGGELSDLDQCGCKRCVTRALNNPEQALNSVSRIDKISRVVFPLIFLVINIVYWYKYLN 1505 VK V +F P+ + + Y+MD +FRQ+W+D+RL + G + L L+ M+ K+W PDT+ NG+KS H +T PNK R+ NG +LY+ RLTI A C M L DFPMD CPL+ GS+ Y +++IY WT G + V + + L Q+DLI + T G++ + V FHL+R MG F+IQ Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + I F N + + + P E L H TS T + ++ RT +V + GN +KT +++ P+ + +P+ R N + SS A+ + +G R S S + G + + NT A G +S T P + + S+IDK +R++FP+ F N+VYW YL+ Sbjct: 74 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWIDKRLKYDGPIEILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEKSVEVPKESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSAL-------IEFAAVNY-FTNIQMQKAKKKISKPPPEVPAAPVLKEKHTETSLQNTHANLNMRKRTNALVHSESDVKSRTEVGNHSSKTSAVQESSEATPKAHLASSPNPFS-------------RANAAETMSAAARGLSSAASPSPHGTLRPASLGSASTRPAFGSRLGRIKTTVNT-------TGAAGNVS----------ATPPPPAPPPSGSGTSKIDKYARILFPVTFGAFNMVYWVVYLS 541
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|3023835|sp|Q90845.1|GBRA6_CHICK (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor) HSP 1 Score: 243.432 bits (620), Expect = 6.585e-69 Identity = 117/263 (44.49%), Postives = 166/263 (63.12%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASDMK-LSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 VK V +F P+ + + Y+MD +FRQ+W D RL F G L L+ M+ KIW PDT+ NG+KS H +TTPNK R+ NG +LY+ RLTI A C M L +FPMD CPL+ GS+ Y +++IY W G V + + L Q+DLI + T N G++ + V FHLQR MG F+IQ+Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + + Sbjct: 58 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFGGPTEILRLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGPLHSVEVPQESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIE 320
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|120763|sp|P28471.1|GBRA4_RAT (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-4; AltName: Full=GABA(A) receptor subunit alpha-4; Flags: Precursor) HSP 1 Score: 240.35 bits (612), Expect = 7.114e-67 Identity = 114/263 (43.35%), Postives = 168/263 (63.88%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGR-KNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASDMK-LSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 VK V +F P+ + + Y+MD +FRQ+W+D+RL + G + L L+ M+ K+W PDT+ NG+KS H +T PNK R+ NG +LY+ RLTI A C M L DFPMD CPL+ GS+ Y +++IY WT G + V + + L Q+DLI + T G++ + V FHL+R MG F+IQ Y PC++ V++S VSFW+N+E+ R G+TTVLTMT L + AR LP+V+YATA+D+F+ + F +F+ + + Sbjct: 74 VKTDIYVTSFGPVSDVEMEYTMDVFFRQTWIDKRLKYDGPIEILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEKSVEVPKESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIE 336
BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Match: gi|462149|sp|P34903.1|GBRA3_HUMAN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-3; AltName: Full=GABA(A) receptor subunit alpha-3; Flags: Precursor) HSP 1 Score: 231.106 bits (588), Expect = 2.313e-64 Identity = 121/263 (46.01%), Postives = 169/263 (64.26%), Query Frame = 0 Query: 1016 VKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSG-RKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAG--RGVNIASD-MKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 VK V +F P+ + Y++D +FRQ+W D RL F G K L L+ + KIW PDT+ +NG+KS H +TTPNK +RL NG +LY+ RLTI A C M L DFPMD CPL+ GS+ YT +V+Y WT G + V +A D +L+Q+DL+ G + G++ + FHL+R +G FVIQ Y PC++ V++S VSFWLNRE+ R GVTTVLTMT L + AR LP+VAYATA+D+F+ + + +F+ + + Sbjct: 93 VKTDIYVTSFGPVSDTDMEYTIDVFFRQTWHDERLKFDGPMKILPLNNLLASKIWTPDTFFHNGKKSVAHNMTTPNKLLRLVDNGTLLYTMRLTIHAECPMHLEDFPMDVHACPLKFGSYAYTTAEVVYSWTLGKNKSVEVAQDGSRLNQYDLLGHVVGTEIIRSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIE 355
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1325328667|ref|XP_023346187.1| (gamma-aminobutyric acid receptor alpha-like [Eurytemora affinis]) HSP 1 Score: 463.381 bits (1191), Expect = 1.247e-144 Identity = 256/490 (52.24%), Postives = 317/490 (64.69%), Query Frame = 0 Query: 1015 LVKWAFPVCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ-QYMEEISFIGNNSGYISANSE---PQINDFQAEPDEYLEQAFLHHNHYHTSTPSFQDVTYRTLPMVGNHLTGNGKAKTLTFEDNPG----LPPQERNILNHHPYGTFYYSKKNGRSGKRPNVLRKSQSMVSKASSQANLANGRRRIRSQNGTSWNSLGRSMTEVTDLSNTGSKVDRWNSAGGELSDLDQCGCKRCVTRALNNPEQALNSVSRIDKISRVVFPLIFLVI 1495 L+ V + P+ + +SY MDCYFRQSWVD+RL+F+G K+ LALSIEMLRKIWKPDT++YNG+KSYLHTITTPN+F+RLFPNGRVLYSQRLTI+A+C M+L FPMDKQ+CPL+IGSFGYT +DV Y+WT GRGVNIASDMKLSQFDLISTPTG TT N+G HSTLIV FHLQRHMG+FVIQVYGPC+LLVVISWVSFWLNREATSDRISLG+TTVLTMTFLGLEAR DLP+V Y TALDYFVFISF IF+TV Q + + +G+ Y+ + PQ+ + + Y Q + + T +LP G+ + +D L + N LNHHP + +N +KS S + + I + G +V +L T + + E +QC CKRCVTRA N+ ++ LNSVS+ID+ISR+VFP +L I Sbjct: 63 LIDVNMQVRSMGPISEMDMSYIMDCYFRQSWVDKRLAFTGYKDALALSIEMLRKIWKPDTFMYNGKKSYLHTITTPNRFVRLFPNGRVLYSQRLTIRATCIMNLEGFPMDKQKCPLRIGSFGYTADDVTYKWTTGRGVNIASDMKLSQFDLISTPTGTETTLRNQGIHSTLIVSFHLQRHMGDFVIQVYGPCILLVVISWVSFWLNREATSDRISLGITTVLTMTFLGLEARKDLPKVPYPTALDYFVFISFTYIFSTVVQFGIVHHFTKVGSGEYYLEELEDEPCPQVEKRKRVREIYATQQQILDLLLDSCT---------SLPTHNGKSCGSNGPSSFKMQDKESSSATLSSLDFNFLNHHP------TARN---------FKKSFQTDSAGCTGGGSLDTLHDIPDNIPGPARAQGAQQLQVRELGLT-RDIFLLENEINERETPEQCVCKRCVTRAFNDSDKCLNSVSKIDRISRIVFPSTYLGI 527 HSP 2 Score: 81.6481 bits (200), Expect = 6.031e-12 Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 0 Query: 702 RNQARNRNQTADNVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDM 758 ++ A+ NQTA NV+ LLDNLLKDYDN+LRP+ GG ++++NMQVRSMGPISE+DM Sbjct: 25 KDLAKLANQTAYNVSKLLDNLLKDYDNNLRPDFGGPSTLIDVNMQVRSMGPISEMDM 81
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1279716947|ref|XP_022902907.1| (gamma-aminobutyric acid receptor alpha-like [Onthophagus taurus]) HSP 1 Score: 402.905 bits (1034), Expect = 1.143e-122 Identity = 232/497 (46.68%), Postives = 286/497 (57.55%), Query Frame = 0 Query: 1027 PLICISVSYSMDCYFRQSWVDRRLSFSG--RKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKG-----------QHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSEPQINDFQAEPDEYLEQAFLHHNHYHTSTPSFQDVTYRTLPMVGNHLTGNGKAKTLTFEDNPGLPPQERNILNHHPYGTFYYSKKNGRSGKRPNVLRKSQSMVSKASSQANLANGRRRIRSQNGTSWNSLGRSMTEVTDLSNTGSKVDRWNSAGGELSDLDQCGCKRCVTRALNNPEQALNSVSRIDKISRVVFPLIFLVINIVYWYKYLNHSERI 1510 P+ I ++YSMDCYFRQSW+DRRL+F+G + LALSI ML +IWKPDTY YNG++SYLHTITTPNKF+RL+ +GRVLYS RLTIKA C M+L DFPMD QRCPL+ GSFGYT DVIY+W R + A DMKLSQFDLI TPT N T + G + S L+V FHLQRHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALDYFVF+SF IFAT+ Q + F SG N+E + E D E TS D +P+ LP + N +N + ++ N S K NV S+ M KA S ++ + +R+ + R+NS VS+IDK SR+VFP++FL INI YWY YL+ ++R+ Sbjct: 81 PISEIDMTYSMDCYFRQSWIDRRLAFTGGDKDTLALSISMLARIWKPDTYFYNGKQSYLHTITTPNKFVRLYRDGRVLYSSRLTIKAGCLMNLEDFPMDIQRCPLRFGSFGYTTRDVIYKWNRARQIVTAEDMKLSQFDLIGTPTANYTDAITGGDTLSDVTTNNTEFSMLLVSFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDYFVFVSFTFIFATIIQFAVVHY-FTKYGSGECYFNAEMLFDSSSEEEDCNSEICKCISTSATTSEVGQNDFLIEVIPLTP-----------------CTLPSKSGNRMNRN-----WHCWMN--SSKETNVSSISKPMTQKAPSTSHREHCKRKKKKA------------------------TPRFNS------------------------------VSKIDKFSRIVFPMLFLAINIFYWYSYLSRTKRV 498 HSP 2 Score: 75.0998 bits (183), Expect = 6.573e-10 Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 0 Query: 701 VRNQARNRNQTADNVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCAS 761 +RN ++ N N++ LLDNLL+ YDNS+RPN GG P ++E+++ VRSMGPISE+DM S Sbjct: 32 LRNNPQHNNH--KNISILLDNLLRGYDNSIRPNFGGSPAIIEVDIMVRSMGPISEIDMTYS 90
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1325331580|ref|XP_023347650.1| (gamma-aminobutyric acid receptor alpha-like, partial [Eurytemora affinis]) HSP 1 Score: 396.356 bits (1017), Expect = 1.397e-121 Identity = 190/254 (74.80%), Postives = 218/254 (85.83%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V + P+ + +SYSMD YFRQ+W+DRRLSF+G + LALS EML+KIWKPDT++YNG K+Y+HTIT PN+F+RLF +GRVLYSQRLTI A+C MDL DFPMDKQ CPLQ+GSFGY I D+ Y+W+ GVNIA+DMKLSQFDLIST TGNSTT LN G HSTL+V FHL RHMG+FVIQVYGPC+LLVVISWVSFWLNREATSDRISLG+TTVLTMTFLGLEAR DLP+V Y TALDYFVFISF+ IF TV Q Sbjct: 32 VRSMGPISELDMSYSMDSYFRQTWIDRRLSFTGFQGALALSNEMLQKIWKPDTFVYNGIKAYVHTITKPNRFVRLFADGRVLYSQRLTISATCLMDLKDFPMDKQMCPLQLGSFGYGIEDIKYEWSKENGVNIAADMKLSQFDLISTLTGNSTTKLNDGLHSTLLVHFHLHRHMGDFVIQVYGPCILLVVISWVSFWLNREATSDRISLGITTVLTMTFLGLEARKDLPKVPYPTALDYFVFISFLYIFFTVIQ 285
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1339051459|ref|XP_023714027.1| (gamma-aminobutyric acid receptor alpha-like isoform X3 [Cryptotermes secundus]) HSP 1 Score: 396.741 bits (1018), Expect = 4.782e-121 Identity = 184/249 (73.90%), Postives = 214/249 (85.94%), Query Frame = 0 Query: 1027 PLICISVSYSMDCYFRQSWVDRRLSFSGRK-NLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 P+ + ++YSMDCYFRQSWVDRRL+F G K LALSI ML++IWKPDTY YNG++SYLHTITTPNKF+RL+ +GRVLYS RLTIKA C M+L DFPMD QRCPL+ GSFGYT NDV+Y+W R V+IA DMKLSQFDLI+TP+ N T L G++S LIV FHLQRHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q Sbjct: 7 PISEVDMTYSMDCYFRQSWVDRRLAFQGNKETLALSISMLQRIWKPDTYFYNGKQSYLHTITTPNKFVRLYQDGRVLYSSRLTIKAGCPMNLEDFPMDTQRCPLKFGSFGYTTNDVVYRWNVARKVDIAVDMKLSQFDLIATPSANQTDALQSGEYSMLIVSFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATIIQ 255
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1339051453|ref|XP_023714023.1| (gamma-aminobutyric acid receptor alpha-like isoform X1 [Cryptotermes secundus] >gi|1339051455|ref|XP_023714024.1| gamma-aminobutyric acid receptor alpha-like isoform X1 [Cryptotermes secundus] >gi|1330900606|gb|PNF27091.1| hypothetical protein B7P43_G08556 [Cryptotermes secundus]) HSP 1 Score: 397.897 bits (1021), Expect = 4.300e-120 Identity = 185/254 (72.83%), Postives = 216/254 (85.04%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRK-NLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V + P+ + ++YSMDCYFRQSWVDRRL+F G K LALSI ML++IWKPDTY YNG++SYLHTITTPNKF+RL+ +GRVLYS RLTIKA C M+L DFPMD QRCPL+ GSFGYT NDV+Y+W R V+IA DMKLSQFDLI+TP+ N T L G++S LIV FHLQRHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q Sbjct: 94 VRSMGPISEVDMTYSMDCYFRQSWVDRRLAFQGNKETLALSISMLQRIWKPDTYFYNGKQSYLHTITTPNKFVRLYQDGRVLYSSRLTIKAGCPMNLEDFPMDTQRCPLKFGSFGYTTNDVVYRWNVARKVDIAVDMKLSQFDLIATPSANQTDALQSGEYSMLIVSFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATIIQ 347 HSP 2 Score: 66.2402 bits (160), Expect = 3.752e-7 Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 0 Query: 714 NVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCAS 761 N++ +LD LL+ YDN++RP+ GG P +VE+++ VRSMGPISEVDM S Sbjct: 61 NISEILDGLLRGYDNNVRPDFGGPPAVVEVDIMVRSMGPISEVDMTYS 108
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1339051461|ref|XP_023714028.1| (gamma-aminobutyric acid receptor alpha-like isoform X4 [Cryptotermes secundus]) HSP 1 Score: 394.045 bits (1011), Expect = 4.790e-120 Identity = 183/242 (75.62%), Postives = 210/242 (86.78%), Query Frame = 0 Query: 1034 SYSMDCYFRQSWVDRRLSFSGRK-NLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 +YSMDCYFRQSWVDRRL+F G K LALSI ML++IWKPDTY YNG++SYLHTITTPNKF+RL+ +GRVLYS RLTIKA C M+L DFPMD QRCPL+ GSFGYT NDV+Y+W R V+IA DMKLSQFDLI+TP+ N T L G++S LIV FHLQRHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q Sbjct: 11 TYSMDCYFRQSWVDRRLAFQGNKETLALSISMLQRIWKPDTYFYNGKQSYLHTITTPNKFVRLYQDGRVLYSSRLTIKAGCPMNLEDFPMDTQRCPLKFGSFGYTTNDVVYRWNVARKVDIAVDMKLSQFDLIATPSANQTDALQSGEYSMLIVSFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATIIQ 252
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|645014755|ref|XP_008206162.1| (PREDICTED: GABA-gated ion channel GRD isoform X2 [Nasonia vitripennis]) HSP 1 Score: 385.571 bits (989), Expect = 5.151e-117 Identity = 187/287 (65.16%), Postives = 227/287 (79.09%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSF-SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQQYMEEISFIGNNSGYISANSEPQINDFQAEPDE 1307 V + P+ + ++YSMDCYFRQSWVDRRL+F SG++ LALSI ML +IWKPDTY YNG++SYLHTIT+PNKF+RL+ +GRVLYS RLTIKA+C M+L DFPMD QRCPL+ GS+GYT DVIY+W + R V IA DMKLSQFDL+ PT N+T ++S L+V FHL+RHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q+ F SG NSE + ND ++ E Sbjct: 84 VRSMGPISEVDMTYSMDCYFRQSWVDRRLAFQSGKETLALSISMLARIWKPDTYFYNGKQSYLHTITSPNKFVRLYQDGRVLYSSRLTIKAACPMNLEDFPMDTQRCPLKFGSYGYTTRDVIYKWNSARQVAIAHDMKLSQFDLVGNPTANATDSTLSQKYSMLLVSFHLKRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFGFIFATII-QFAVVHYFTKYGSGECYFNSETE-NDVESSDSE 368 HSP 2 Score: 73.9442 bits (180), Expect = 1.130e-9 Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 0 Query: 704 QARNRNQTADNVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCAS 761 + R ++ N++ LLDNLL+ YDNS+RPN GG P +VE+++ VRSMGPISEVDM S Sbjct: 41 RERTQSNNHGNISELLDNLLRGYDNSVRPNFGGPPAVVEVDIMVRSMGPISEVDMTYS 98
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1228385103|ref|XP_021954170.1| (gamma-aminobutyric acid receptor alpha-like [Folsomia candida]) HSP 1 Score: 385.571 bits (989), Expect = 8.158e-117 Identity = 180/255 (70.59%), Postives = 217/255 (85.10%), Query Frame = 0 Query: 1022 VCTFCPLICISVSYSMDCYFRQSWVDRRLSFSGRK--NLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 V + P+ + ++YSMDCYFRQ+WVD+RL + K LALSI ML KIWKPDTY YNG++SYLHTITTPNKF+RL +GRVLYS RLT+KASC M+L DFPMD QRCPL++GSFGYTI+DV+Y+W A R V+IA DMK+SQFDLISTP+GN T + G++STL + F+LQRHMGNF+IQVYGPC LLV++SWVSFWLNREAT+DR+SLGVTTVLTMTFLGLEARTDLP+V+Y TALD+FVF+SF IFAT+ Q Sbjct: 57 VRSMGPISEVDMTYSMDCYFRQTWVDKRLEYHSTKGDTLALSISMLEKIWKPDTYFYNGKQSYLHTITTPNKFVRLKMDGRVLYSSRLTVKASCPMNLEDFPMDTQRCPLKLGSFGYTISDVLYRWNANRTVDIALDMKMSQFDLISTPSGNGTEKMKLGEYSTLDINFYLQRHMGNFLIQVYGPCTLLVILSWVSFWLNREATADRVSLGVTTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFAFIFATIIQ 311 HSP 2 Score: 78.5666 bits (192), Expect = 4.604e-11 Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = 0 Query: 700 FVRNQAR--NRNQTADNVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCASSMV---------KNEYEAILLDPLSMSLSIL 783 F+RN++ +N NV+ LLDNLL+ YDNS+RP+ GG P +VEI++ VRSMGPISEVDM S + EY + D L++S+S+L Sbjct: 8 FIRNKSDPGYKNNNHKNVSELLDNLLRGYDNSIRPDFGGPPTIVEIDIMVRSMGPISEVDMTYSMDCYFRQTWVDKRLEYHSTKGDTLALSISML 102
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|1351617805|ref|XP_024083752.1| (gamma-aminobutyric acid receptor alpha-like isoform X2 [Cimex lectularius] >gi|1351617807|ref|XP_024083756.1| gamma-aminobutyric acid receptor alpha-like isoform X2 [Cimex lectularius]) HSP 1 Score: 384.03 bits (985), Expect = 1.081e-116 Identity = 178/249 (71.49%), Postives = 213/249 (85.54%), Query Frame = 0 Query: 1027 PLICISVSYSMDCYFRQSWVDRRLSFSGRKN-LALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTFLNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 P+ + ++YSMDCYFRQ+WVD RL++SG K+ LALSI ML++IWKPDTY YNG++SYLHTIT+PNKF+RLF +GRVLYS RLTIKA C M+L +FPMD QRCPL+ GSFGYTI DV+Y+W G V+IA DMKLSQFDLI P+ N T L G++S L+V FHL+RHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q Sbjct: 7 PISEVDMTYSMDCYFRQTWVDTRLAYSGHKDTLALSITMLKRIWKPDTYFYNGKQSYLHTITSPNKFVRLFQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLKFGSFGYTIKDVVYKWKMGTEVDIAKDMKLSQFDLIGNPSANQTDQLKSGRYSMLLVSFHLRRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFGFIFATIIQ 255
BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Match: gi|780701573|ref|XP_011702170.1| (PREDICTED: gamma-aminobutyric acid receptor alpha-like isoform X1 [Wasmannia auropunctata] >gi|780701577|ref|XP_011702171.1| PREDICTED: gamma-aminobutyric acid receptor alpha-like isoform X1 [Wasmannia auropunctata]) HSP 1 Score: 385.956 bits (990), Expect = 2.391e-116 Identity = 180/251 (71.71%), Postives = 211/251 (84.06%), Query Frame = 0 Query: 1027 PLICISVSYSMDCYFRQSWVDRRLSF-SGRKNLALSIEMLRKIWKPDTYIYNGRKSYLHTITTPNKFMRLFPNGRVLYSQRLTIKASCQMDLSDFPMDKQRCPLQIGSFGYTINDVIYQWTAGRGVNIASDMKLSQFDLISTPTGNSTTF--LNKGQHSTLIVGFHLQRHMGNFVIQVYGPCVLLVVISWVSFWLNREATSDRISLGVTTVLTMTFLGLEARTDLPQVAYATALDYFVFISFMSIFATVTQ 1274 P+ + ++YSMDCYFRQSWVDRRL+F G++ LALSI ML KIWKPDTY YNG+ SYLHTIT+PNKF+RL+ NGRVLYS RLTIKA C M+L DFPMD Q+CPLQ GSFGYT DVIY+W + R V IA DMKLSQFDL++ PT N +T + ++S L+V FHLQRHMGNF+IQVYGPCVLLVV+SWVSFWLNREAT+DR+SLG+TTVLTMTFLGLEARTDLP+V Y TALD+FVF+SF IFAT+ Q Sbjct: 76 PISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLAKIWKPDTYFYNGKHSYLHTITSPNKFVRLYQNGRVLYSSRLTIKAGCPMNLEDFPMDTQKCPLQFGSFGYTTRDVIYKWNSARQVAIAEDMKLSQFDLVANPTANHSTASGFSHAEYSILLVYFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATIIQ 326 HSP 2 Score: 72.7886 bits (177), Expect = 2.850e-9 Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 0 Query: 682 LAVHSQSPKIASDTKKVPFVRNQARNRNQTADNVTFLLDNLLKDYDNSLRPNLGGEPLMVEINMQVRSMGPISEVDMCAS 761 LA S +AS K VR + ++ N + N++ LLDNLL+ YDNS+RP+ GG P VE+++ VRSMGPISEVDM S Sbjct: 9 LANFITSTFLASANAKTS-VRQRTQSNNHS--NISDLLDNLLRGYDNSIRPDFGGPPATVEVDIMVRSMGPISEVDMTYS 85 The following BLAST results are available for this feature:
BLAST of gaba-gated ion channel grd isoform x2 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of gaba-gated ion channel grd isoform x2 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of gaba-gated ion channel grd isoform x2 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold456_size166325:29522..90418- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold456_size166325-snap-gene-0.27 ID=maker-scaffold456_size166325-snap-gene-0.27|Name=gaba-gated ion channel grd isoform x2|organism=Tigriopus kingsejongensis|type=gene|length=60897bp|location=Sequence derived from alignment at scaffold456_size166325:29522..90418- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'gaba-gated ion channel grd isoform x2' has the following synonyms
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