orphan nuclear receptor, maker-scaffold491_size156641-snap-gene-0.24 (gene) Tigriopus kingsejongensis

Overview


Name	orphan nuclear receptor
Unique Name	maker-scaffold491_size156641-snap-gene-0.24
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000000733 (supercontig:LSalAtl2s:LSalAtl2s1117:84476:96586:1 gene:EMLSAG00000000733 transcript:EMLSAT00000000733 description:"maker-LSalAtl2s1117-snap-gene-1.23")

HSP 1 Score: 93.5893 bits (231), Expect = 3.461e-20
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 0

Query:  191 ESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGM 260
            E + C +C DK++G+HYG+ITCEGCKGFF+R+  +   Y C    +C +++  RNRCQ+CR QKCL  GM
Sbjct:   43 EIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRQKNCIVDRVNRNRCQFCRLQKCLALGM 112

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000009940 (supercontig:LSalAtl2s:LSalAtl2s649:353131:422335:-1 gene:EMLSAG00000009940 transcript:EMLSAT00000009940 description:"maker-LSalAtl2s649-augustus-gene-4.7")

HSP 1 Score: 92.4337 bits (228), Expect = 8.765e-20
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 0

Query:  191 ESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGR 274
            + + C++C DK++G HYG  TCEGCK FFKR+V+    Y C     C I++  RN+CQ+CR +KC+  GM   AV+  R+P  +
Sbjct:  430 QDISCVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRALTYQCRGSRSCPIDQHHRNQCQHCRLKKCIKMGMRKEAVQRGRIPASQ 513

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000007894 (supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1 gene:EMLSAG00000007894 transcript:EMLSAT00000007894 description:"maker-LSalAtl2s466-augustus-gene-2.7")

HSP 1 Score: 90.1225 bits (222), Expect = 1.724e-19
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 0

Query:  195 CMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVA--DGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSS 295
            C +C D ++G HYGI  C+GC GFFKR+++  R+Y C A  +G C ++K  RN+C+ CR ++C+  GM   AV+ +R  G RNS     M  + +K++ N ++
Sbjct:   34 CKVCTDHSSGKHYGIFACDGCAGFFKRSIRRNRLYVCKAKSEGSCLVDKTHRNQCRACRLKRCVDVGMNKDAVQHER--GPRNSTLRRQM-SLYFKEHSNNNT 133

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000007741 (supercontig:LSalAtl2s:LSalAtl2s450:172104:174744:-1 gene:EMLSAG00000007741 transcript:EMLSAT00000007741 description:"maker-LSalAtl2s450-snap-gene-2.9")

HSP 1 Score: 89.7373 bits (221), Expect = 5.124e-19
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = 0

Query:  195 CMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVAD----GHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMP 271
            C +C D+++G HYGI +C+GC GFFKR++  +RIY C A     G C I+K  RN+C+ CR +KC    M   AV+ +R P
Sbjct:  108 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRQRIYTCKAQGEFKGRCPIDKTHRNQCRACRLKKCFDCSMNKDAVQHERGP 188

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0")

HSP 1 Score: 87.0409 bits (214), Expect = 2.461e-18
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDR 269
            +C++C D+A+G HY  + CEGCKGFF+R++     Y C  +G CEI+   R +CQ CR +KC   GM    V  +R
Sbjct:  172 LCLVCGDRASGYHYNALACEGCKGFFRRSITKNSNYTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPER 247

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000005619 (supercontig:LSalAtl2s:LSalAtl2s301:354064:356113:1 gene:EMLSAG00000005619 transcript:EMLSAT00000005619 description:"maker-LSalAtl2s301-augustus-gene-3.7")

HSP 1 Score: 80.1073 bits (196), Expect = 3.791e-16
Identity = 36/101 (35.64%), Postives = 54/101 (53.47%), Query Frame = 0

Query:  170 PANAKKLTEGTTQEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKR-IYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDR 269
            P+   +L +    E  D ++ +  +C +CE+ A G H+G  TCEGCK FF RT  N+  I  C  +  C ++K  R  C+ CR +KC+  GM  +  R  R
Sbjct:   34 PSIGNQLEQPPKFEAMDPMQNQ--LCRVCEEPAAGFHFGAFTCEGCKSFFGRTCNNQSVIQECKNNYRCVVDKKNRTACKACRLRKCIMVGMSKSGSRYGR 132

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24")

HSP 1 Score: 75.8702 bits (185), Expect = 9.715e-15
Identity = 39/117 (33.33%), Postives = 56/117 (47.86%), Query Frame = 0

Query:  193 LICMICEDKATG-LHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETH 308
            ++C +C DKA   +HYG I C  C+ FF+R+V     Y C  D  C I    R  CQ+CR++KCL  GM  + V  +     RN         +KY +    + GK     +T E +
Sbjct:   89 MVCNVCGDKAPDHIHYGGIACFSCRAFFRRSVPKHTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRN--------LIKYVRKNKTTCGKNVNNNNTIEVN 197

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000005620 (supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1 gene:EMLSAG00000005620 transcript:EMLSAT00000005620 description:"maker-LSalAtl2s301-augustus-gene-5.4")

HSP 1 Score: 71.2478 bits (173), Expect = 1.872e-14
Identity = 34/79 (43.04%), Postives = 42/79 (53.16%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKR---IYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDR 269
            IC +C++ A G H+G  TCEGCK FF RT        I  C  +  C I+K  R  C+ CR +KCL  GM  A  R  R
Sbjct:   37 ICRVCDEPAAGYHFGAFTCEGCKSFFGRTCGKSNLNSISECKNNYSCVIDKKNRTSCKACRLRKCLRVGMSKAGSRYGR 115

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3")

HSP 1 Score: 72.4034 bits (176), Expect = 1.147e-13
Identity = 32/67 (47.76%), Postives = 37/67 (55.22%), Query Frame = 0

Query:  195 CMICEDKATG-LHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGM 260
            C IC D A   +HYG I C  C+ FF+R V     Y+C  D  C I K  R  CQ+CRF KCL  GM
Sbjct:   63 CHICSDTANDHIHYGAIACXSCRAFFRRAVICNAEYHCSRDKTCFITKETRKHCQFCRFNKCLEAGM 129

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19")

HSP 1 Score: 67.781 bits (164), Expect = 3.228e-12
Identity = 41/114 (35.96%), Postives = 55/114 (48.25%), Query Frame = 0

Query:  194 ICMICEDKATG-LHYGIITCEGCKGFFKRTVQN---KRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEIS 303
            +C IC + A   ++YG   C  C+ FF+R+VQN   K+   C     C IN   R  CQ CRFQKC+  GM ++ V  DR    + S    N  K     + N   G T  E+S
Sbjct:  106 LCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSKKSAMTLNNNKPPL-PSFNDPEGLTSIEVS 218

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BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|1710719|sp|P51128.1|RXRA_XENLA (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha)

HSP 1 Score: 158.688 bits (400), Expect = 4.011e-41
Identity = 112/393 (28.50%), Postives = 172/393 (43.77%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPS----LVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRTV+    Y C     C I+K QRNRCQYCR+QKCL  GM   AV+E+R  G               ++N+N        E+ +  +   DMP + I     A+   ++  T+                                     N+G L   + SD    +CQ  D  ++ LV+W +R+P + ELP+D    LL   W+ELL+ + S +++I  + + G +   G     +   S                          VG + +++ T +++  R  ++   E  CL+ I +  N DS   S    +  +  +    L AY  Q +P +P R  KLL+RLP +R      LE   F+
Sbjct:  160 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG--------------KERNEN--------EVESSNSANEDMPVEKILEAEHAVEPKTETYTE------------------------------------ANMG-LAPNSPSDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFS-HRSI--AVKDGILLATGLHVHRNSAHSAG------------------------VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF-NPDSKGLSNPLEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 465

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BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|74902124|sp|Q5I7G2.1|RXR_LYMST (RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X receptor; Short=LymRXR)

HSP 1 Score: 157.147 bits (396), Expect = 5.909e-41
Identity = 115/398 (28.89%), Postives = 169/398 (42.46%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTS-----AYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLV----PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+A+G HYG+ +CEGCKGFFKRTV+    Y C  D +C I+K QRNRCQYCR+ KCL  GM   AV+E+R              +VK K +         GE+ +      DMP +   IL A L  + +I T         DA+K+       + N                              +CQ  D  ++ LV+W +R+P + ELP++    LL   W+ELL+   S     A   I  +T +   R+   +A                                 VG + +++ T ++A  R+ K+   E  CL+ + +  N D+   + V     +  +    L  Y    +P EP R  KLL+RLP +R      LE   F+
Sbjct:  116 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLSMGMKREAVQEERQ-------------RVKEKGD---------GEVESTSGANNDMPVE--QILEAELAVDPKIDTYI-------DAQKDP------VTN------------------------------ICQAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQA--------------------------------GVGTIFDRVLTELVAKMREMKMDKTELGCLRAVVLF-NPDAKGLTAVQEVEQLREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFF 413

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BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|464702|sp|Q05343.1|RXRA_RAT (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha)

HSP 1 Score: 157.532 bits (397), Expect = 7.186e-41
Identity = 113/393 (28.75%), Postives = 176/393 (44.78%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRTV+    Y C  +  C I+K QRNRCQYCR+QKCL  GM   AV+E+R  G                K++N++      E+ +  +   DMP +   IL A L    +  T  +                                   N+G L   + +D    +CQ  D  ++ LV+W +R+P + ELP+D    LL   W+ELL+ + S +++I  + + G +   G     +   S                          VG + +++ T +++  R  ++   E  CL+ I +  N DS   ++P+ V  +  +    L AY    +P +P R  KLL+RLP +R      LE   F+
Sbjct:  139 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG----------------KDRNEN------EVESTSSANEDMPVE--KILEAELAVEPKTETYVE----------------------------------ANMG-LNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFS-HRSI--AVKDGILLATGLHVHRNSAHSAG------------------------VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF-NPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 444

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BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|133701|sp|P19793.1|RXRA_HUMAN (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha)

HSP 1 Score: 157.532 bits (397), Expect = 8.434e-41
Identity = 113/393 (28.75%), Postives = 176/393 (44.78%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRTV+    Y C  +  C I+K QRNRCQYCR+QKCL  GM   AV+E+R  G                K++N++      E+ +  +   DMP +   IL A L    +  T  +                                   N+G L   + +D    +CQ  D  ++ LV+W +R+P + ELP+D    LL   W+ELL+ + S +++I  + + G +   G     +   S                          VG + +++ T +++  R  ++   E  CL+ I +  N DS   ++P+ V  +  +    L AY    +P +P R  KLL+RLP +R      LE   F+
Sbjct:  134 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG----------------KDRNEN------EVESTSSANEDMPVE--RILEAELAVEPKTETYVE----------------------------------ANMG-LNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFS-HRSI--AVKDGILLATGLHVHRNSAHSAG------------------------VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF-NPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 439

[Close]

BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|75017953|sp|Q8T5C6.1|RXR_BIOGL (RecName: Full=Retinoic acid receptor RXR; AltName: Full=RXR-like protein; AltName: Full=Retinoid X receptor; Short=BgRXR)

HSP 1 Score: 156.762 bits (395), Expect = 8.886e-41
Identity = 115/398 (28.89%), Postives = 168/398 (42.21%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTS-----AYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLV----PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+A+G HYG+ +CEGCKGFFKRTV+    Y C  D +C I+K QRNRCQYCR+ KCL  GM   AV+E+R              +VK K +         GE+ +      DMP +   IL A L  + +I T         DA+K+       + N                              +CQ  D  ++ LV+W +R+P + ELP++    LL   W+ELL+   S     A   I  +T +   R+   +A                                 VG + +++ T ++A  R  K+   E  CL+ + +  N D+   + V     +  +    L  Y    +P EP R  KLL+RLP +R      LE   F+
Sbjct:  116 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLSMGMKREAVQEERQ-------------RVKEKGD---------GEVESTSGANNDMPVE--QILEAELAVDPKIDTYI-------DAQKDP------VTN------------------------------ICQAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQA--------------------------------GVGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLF-NPDAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFF 413

[Close]

BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|133702|sp|P28700.1|RXRA_MOUSE (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha)

HSP 1 Score: 157.532 bits (397), Expect = 8.936e-41
Identity = 113/393 (28.75%), Postives = 176/393 (44.78%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRTV+    Y C  +  C I+K QRNRCQYCR+QKCL  GM   AV+E+R  G                K++N++      E+ +  +   DMP +   IL A L    +  T  +                                   N+G L   + +D    +CQ  D  ++ LV+W +R+P + ELP+D    LL   W+ELL+ + S +++I  + + G +   G     +   S                          VG + +++ T +++  R  ++   E  CL+ I +  N DS   ++P+ V  +  +    L AY    +P +P R  KLL+RLP +R      LE   F+
Sbjct:  139 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG----------------KDRNEN------EVESTSSANEDMPVE--KILEAELAVEPKTETYVE----------------------------------ANMG-LNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFS-HRSI--AVKDGILLATGLHVHRNSAHSAG------------------------VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF-NPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 444

[Close]

BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|1710810|sp|P51129.1|RXRG_XENLA (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 155.606 bits (392), Expect = 4.147e-40
Identity = 108/393 (27.48%), Postives = 177/393 (45.04%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSD----STSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRT++   +Y C     C I+K QRNRCQYCR+QKCL  GM   AV+E+R                  ++++ KS  +     ST E    +MP +   IL A L  + +I                              + F D          L  +T+D    +C   D  ++ LV+W +R+P++ +LP++    LL   W+ELL+ + S ++++  S + G +   G    +H+  + N                        VG++ +++ T +++  +   +   E  CL+ I +  N D    S +  +  +  +    L +Y  Q +P +P R  KLL+RLP +R      LE   F+
Sbjct:  145 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDSKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER------------------QRSREKSDTEAESTSSTSE----EMPVE--RILEAELAVDPKI------------------------------EAFGDAG--------LPNSTNDPVTNICHAADKQLFTLVEWAKRIPYFSDLPLEDQVILLRAGWNELLIASFS-HRSV--SVQDGILLATG--LHVHRSSAHN----------------------AGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLF-NPDAKGLSNAAEVEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFF 447

[Close]

BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|52783417|sp|Q90415.1|RXRAB_DANRE (RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName: Full=Nuclear receptor subfamily 2 group B member 1-B; AltName: Full=Retinoid X receptor alpha-B)

HSP 1 Score: 153.295 bits (386), Expect = 5.274e-40
Identity = 117/393 (29.77%), Postives = 177/393 (45.04%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRTV+    Y C  +  C I+K QRNRCQYCR+QKCL  GM   AV+E+R                  ++ K +S  + GG  +       DMP +   IL A L    +  T   ++  N     NS                                 +D    +CQ  D  ++ LV+W +R+P + +LP+D    LL   W+ELL+ + S +++I  + + G +   G    LH       V   +  T+              VG + +++ T +++  R  ++   E  CL+ I +  N DS   ++PS V  +  R    L AY    +P +P R  KLL+RLP +R      LE   F+
Sbjct:   53 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEER------------------QRAKERSEAEFGGCANE------DMPVE--KILEAELAVEPKTET---YVEANLSPSANS--------------------------------PNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFS-HRSI--AVKDGILLATG----LH-------VHRNSAHTA-------------GVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF-NPDSKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFF 356

[Close]

BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|147732610|sp|A2T929.2|RXRAA_DANRE (RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName: Full=Nuclear receptor subfamily 2 group B member 1-A; AltName: Full=RXRalpha-B; AltName: Full=Retinoid X receptor alpha-A)

HSP 1 Score: 154.066 bits (388), Expect = 6.658e-40
Identity = 110/393 (27.99%), Postives = 171/393 (43.51%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRTV+    Y C  +  C I+K QRNRCQYCR+QKCL  GM   AV+E+R                       ++  ++  E+ +  +   DMP +   IL A L    +  T   ++  N     NS                                 +D    +CQ  D  ++ LV+W +R+P + ELP+D    LL   W+ELL+ + S +++I  + + G +   G     +   S                          VG + +++ T +++  R  ++   E  CL+ I +  N DS   ++P  V  +  +    L AY    +P +P R  KLL+RLP +R      LE   F+
Sbjct:  102 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREAVQEER----------------------QRAKERSENEVESTSSANEDMPVE--KILEAELAVEPKTET---YIETNVPMPSNS--------------------------------PNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFS-HRSI--AVKDGILLATGLHVHRNSAHSAG------------------------VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF-NPDSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 407

[Close]

BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|133700|sp|P28701.1|RXRG_CHICK (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 154.066 bits (388), Expect = 1.190e-39
Identity = 112/393 (28.50%), Postives = 180/393 (45.80%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRT++   IY C  +  C I+K QRNRCQYCR+QKCL  GM   AV+E+R  G R             ++++N++   +GG          DMP +   IL A L    +                               + + D+ T          +T+D    +C   D  ++ LV+W +R+P + +L ++    LL   W+ELL+ + S ++++  S + G +   G    LH   S+                         VG++ +++ T +++  +  ++   E  CL+ I +  N D+   +SPS V  +  +    L AY  Q +P +P R  KLL+RLP +R      LE   F+
Sbjct:  142 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ-GSR-------------ERSENEAESTSGG--------SEDMPVE--RILEAELAVEPKT------------------------------EAYSDVNT--------ESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFS-HRSV--SVQDGILLATG----LHVHRSS--------------------AHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF-NPDAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 444

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|985401230|ref|XP_015368325.1| (PREDICTED: hormone receptor 4-like isoform X2 [Diuraphis noxia] >gi|985401232|ref|XP_015368326.1| PREDICTED: hormone receptor 4-like isoform X2 [Diuraphis noxia] >gi|985401234|ref|XP_015368327.1| PREDICTED: hormone receptor 4-like isoform X2 [Diuraphis noxia])

HSP 1 Score: 523.472 bits (1347), Expect = 1.358e-172
Identity = 274/493 (55.58%), Postives = 335/493 (67.95%), Query Frame = 0

Query:  154 IPINMEKLWDGDRTQLPANAK------KLTEGT-----------------------TQEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGK----------TGGEISTKETHQFDMPCQ------NINILRAALTGNSQISTQYKHL----FVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHG------STRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMV-ENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            +P+NME+LW GD +QLP  A        LT  T                        +E D+  +E+ ++CMIC+D+ATGLHYGIITCEGCKGFFKRTVQN+RIY C+A+G CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKVKYKK +   +G+          T   ++T +T   D          N  IL+ ALT  S++    + L      +RD   +    + +I NL+ CD+F+DIATL+N+ +LL  N SDL  KL QIGDSIVYKLVQWT+RLPFY ELPV+VHT+LLTHKWHELLVLTTSAYQAIHG      ST M   R   E +E HQEV  NL  LQ CL+SMMGKPITMDQLRQDVG MVEKIT V  +FR+ KL+MEEYVCLKVI M+ +N+ +T+  L  I  RY  CL+ Y     P++P+R+  LL RLPE++ AA+LLLESKMFYVPFLLNS+I
Sbjct:  447 VPLNMERLWAGDLSQLPVAATHQMHALNLTANTGPGWPMAGSNNDNKSAPVNAYHQMEEADE--QEQPMVCMICDDRATGLHYGIITCEGCKGFFKRTVQNRRIYTCIAEGTCEITKAQRNRCQYCRFKKCIGQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKKRPPKNGQVKMEKSVACTTASTMTTIKTENQDNNSSSMSTLVNGTILKTALTNPSEVVYLRQRLDNAVSSSRDRTFSIEATVNMIKNLMDCDEFQDIATLRNMEDLLEHN-SDLSAKLMQIGDSIVYKLVQWTKRLPFYLELPVEVHTRLLTHKWHELLVLTTSAYQAIHGPQKIWNSTNMNGDR--NEDSEFHQEVFQNLCILQNCLSSMMGKPITMDQLRQDVGVMVEKITHVTLMFRRVKLRMEEYVCLKVIIMLTQNNGNTTSELETIQERYTSCLKTYVEHTFPMQPNRLQDLLQRLPEIQSAASLLLESKMFYVPFLLNSTI 934

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|1101367760|ref|XP_018915169.1| (PREDICTED: hormone receptor 4 isoform X2 [Bemisia tabaci])

HSP 1 Score: 520.005 bits (1338), Expect = 3.801e-171
Identity = 279/481 (58.00%), Postives = 339/481 (70.48%), Query Frame = 0

Query:  155 PINMEKLWDGDRTQLPA-------NAKKLTEGTTQE----------GDDHI--------------------EEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNK-NKSSGKTGGEISTKETHQFDMPCQNIN--ILRAALTGNSQISTQYKHL--FVNRDAEKN-SFDH-MQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPS-LVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            P+NMEKLW GD +QLPA       N      G              GD H                     +E+ +ICMICEDKATGLHYGIITCEGCKGFFKRTVQN+R+Y CVADG CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKVKYKK+K N  +G+   E    +  +  +P   +N  IL+ ALT  S++    + L   V+   ++N + D  + +I  L+ CD+F+DIATL+N+ +LL ++ SDL  KL +IGDSIVYKLVQWT+RLPFY ELPV+VHTKLLTHKWHELLVLTTSAYQAIHG+ ++G+  TDG +A+  Q+VS NL TLQTCLTSMMG+PITMDQLRQDVG MVEKIT V  +FR+ KL+MEEYVCLKVI M+  S+    S L  I  RY+ CL+ Y     P +P+R   LLVRLPEV+ AA+LLL+SKMFYVPFLLNS+I
Sbjct:  463 PLNMEKLWAGDLSQLPASQQIQALNLSSYGAGPPSSCWPVPYIKANGDAHAAGHALNPGPVVQKIHEETEEDEQPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGICEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKNTRNGQLKLEGKPNKGPEPTIPAHLVNGTILKTALTNPSEVVHLRQRLDNTVSSSRDRNLTLDATLSMIQGLVDCDEFQDIATLQNLDDLL-EHKSDLSDKLMKIGDSIVYKLVQWTKRLPFYLELPVEVHTKLLTHKWHELLVLTTSAYQAIHGAHKLGSTSTDGTEADFTQQVSNNLCTLQTCLTSMMGRPITMDQLRQDVGLMVEKITHVTLMFRRIKLRMEEYVCLKVIIMLNPSNRAGTSELESILERYMSCLKTYVENTAPQQPNRFHDLLVRLPEVQSAASLLLDSKMFYVPFLLNSTI 942

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|1101367758|ref|XP_018915168.1| (PREDICTED: hormone receptor 4 isoform X1 [Bemisia tabaci])

HSP 1 Score: 519.235 bits (1336), Expect = 8.641e-171
Identity = 279/481 (58.00%), Postives = 339/481 (70.48%), Query Frame = 0

Query:  155 PINMEKLWDGDRTQLPA-------NAKKLTEGTTQE----------GDDHI--------------------EEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNK-NKSSGKTGGEISTKETHQFDMPCQNIN--ILRAALTGNSQISTQYKHL--FVNRDAEKN-SFDH-MQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPS-LVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            P+NMEKLW GD +QLPA       N      G              GD H                     +E+ +ICMICEDKATGLHYGIITCEGCKGFFKRTVQN+R+Y CVADG CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKVKYKK+K N  +G+   E    +  +  +P   +N  IL+ ALT  S++    + L   V+   ++N + D  + +I  L+ CD+F+DIATL+N+ +LL ++ SDL  KL +IGDSIVYKLVQWT+RLPFY ELPV+VHTKLLTHKWHELLVLTTSAYQAIHG+ ++G+  TDG +A+  Q+VS NL TLQTCLTSMMG+PITMDQLRQDVG MVEKIT V  +FR+ KL+MEEYVCLKVI M+  S+    S L  I  RY+ CL+ Y     P +P+R   LLVRLPEV+ AA+LLL+SKMFYVPFLLNS+I
Sbjct:  469 PLNMEKLWAGDLSQLPASQQIQALNLSSYGAGPPSSCWPVPYIKANGDAHAAGHALNPGPVVQKIHEETEEDEQPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGICEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKNTRNGQLKLEGKPNKGPEPTIPAHLVNGTILKTALTNPSEVVHLRQRLDNTVSSSRDRNLTLDATLSMIQGLVDCDEFQDIATLQNLDDLL-EHKSDLSDKLMKIGDSIVYKLVQWTKRLPFYLELPVEVHTKLLTHKWHELLVLTTSAYQAIHGAHKLGSTSTDGTEADFTQQVSNNLCTLQTCLTSMMGRPITMDQLRQDVGLMVEKITHVTLMFRRIKLRMEEYVCLKVIIMLNPSNRAGTSELESILERYMSCLKTYVENTAPQQPNRFHDLLVRLPEVQSAASLLLDSKMFYVPFLLNSTI 948

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|641663899|ref|XP_008182814.1| (PREDICTED: hormone receptor 4 isoform X2 [Acyrthosiphon pisum])

HSP 1 Score: 515.768 bits (1327), Expect = 1.660e-169
Identity = 273/491 (55.60%), Postives = 333/491 (67.82%), Query Frame = 0

Query:  154 IPINMEKLWDGDRTQLPANAK------KLTEGTT-------QEGDDH--------------IEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEIST---------------KETHQFDMPCQ-NINILRAALTGNSQISTQYKHL----FVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHG------STRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMV-ENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            +P+NME+LW GD +QLP  A        LT  T          GD+                +E+ ++CMIC+D+ATGLHYGIITCEGCKGFFKRTVQN+RIY C+A+G CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKVKYKK +   +G+   E S                ++ +   M    N  IL+ ALT  S++    + L      +RD   +    + +I NL+ CD+F+DIATL+N+ +LL  N SDL  KL QIGDSIVYKLVQWT+RLPFY ELPV+VHT+LLTHKWHELLVLTTSAYQAIHG      ST M   R   E +E HQEV  NL  LQ CL+SMMGKPITMDQLRQDVG MVEKIT V  +FR+ KL+MEEYVCLKVI M+ +N+ +T+  L  I  RY  CL+ Y     P++P+R+  LL RLPE++ AA+LLLESKMFYVPFLLNS+I
Sbjct:  457 VPLNMERLWAGDLSQLPVAATHQMHALNLTANTGPGWPMAGSNGDNKSAPVNAYHQMEEAEEQEQPMVCMICDDRATGLHYGIITCEGCKGFFKRTVQNRRIYTCIAEGTCEITKAQRNRCQYCRFKKCIGQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKKRPPKNGQVKMEKSVTCTTASTMTTIKTENQDNNSSSMSTLVNGTILKTALTNPSEVVYLRQRLDNAVSSSRDRTFSIEATVNMIKNLMDCDEFQDIATLRNMEDLLEHN-SDLSAKLMQIGDSIVYKLVQWTKRLPFYLELPVEVHTRLLTHKWHELLVLTTSAYQAIHGPQKIWNSTNMNGDR--NEDSEFHQEVFQNLCILQNCLSSMMGKPITMDQLRQDVGVMVEKITHVTLMFRRLKLRMEEYVCLKVIIMLTQNNGNTTSELETIQERYTSCLKTYVEHTFPMQPNRLQDLLQRLPEIQSAASLLLESKMFYVPFLLNSTI 944

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|321456767|gb|EFX67867.1| (hypothetical protein DAPPUDRAFT_203579 [Daphnia pulex])

HSP 1 Score: 508.449 bits (1308), Expect = 1.892e-169
Identity = 261/421 (62.00%), Postives = 312/421 (74.11%), Query Frame = 0

Query:  182 QEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKY---KKNKNKS----SGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHL----FVNRDAEKNSFD-HMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            QE D   E+  +ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKR+Y CVA+G+CEI KAQRNRCQYCRFQKCL +GMVLAAVREDRMPGGRNSGAVYN+YKVKY   KKN NKS    +  T G ++ ++  Q      N NIL+ ALT  S++    + L      +RDA    ++  M  I  LI CD+FEDIATLK + ELL+   ++L  KLCQIGDSIVYKLVQWT+RLPFY ELPV+VHT+LLTHKWHELLVLTTSAYQAIHG  +  +     E  +  Q+VS NLVTLQTCL +MMG+P+T+DQLRQDVG MVE+IT V  + ++ +L+MEEYVCLKVIAM+   +     L  I  RY++CL++Y   ++P  P R   LL RLPEV+ AA LLLESKMFYVPFLLNS+I
Sbjct:  316 QEDD---EDTPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRVYTCVAEGNCEITKAQRNRCQYCRFQKCLAQGMVLAAVREDRMPGGRNSGAVYNLYKVKYRKHKKNNNKSPPGTTANTNGGVTAQQQQQVPR-IANGNILKTALTNPSEVLHLRRRLESAVTSSRDAISMPYETAMPTICTLIYCDEFEDIATLK-LDELLD-TKAELSDKLCQIGDSIVYKLVQWTKRLPFYSELPVEVHTRLLTHKWHELLVLTTSAYQAIHGPRKTWSGPEPTEH-DFVQQVSANLVTLQTCLAAMMGRPLTLDQLRQDVGLMVERITHVTMMLQRSQLRMEEYVCLKVIAMLSQRNV---ELEAIQERYMQCLQSYVEHNYPQSPGRFSDLLTRLPEVQSAATLLLESKMFYVPFLLNSAI 726

The following BLAST results are available for this feature:

BLAST of orphan nuclear receptor vs. L. salmonis genes
BLAST of orphan nuclear receptor vs. SwissProt
BLAST of orphan nuclear receptor vs. nr

BLAST of orphan nuclear receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000000733	3.461e-20	51.43	supercontig:LSalAtl2s:LSalAtl2s1117:84476:96586:1 ...	[more]
EMLSAG00000009940	8.765e-20	44.05	supercontig:LSalAtl2s:LSalAtl2s649:353131:422335:-...	[more]
EMLSAG00000007894	1.724e-19	39.81	supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1...	[more]
EMLSAG00000007741	5.124e-19	45.68	supercontig:LSalAtl2s:LSalAtl2s450:172104:174744:-...	[more]
EMLSAG00000005090	2.461e-18	43.42	supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-...	[more]
EMLSAG00000005619	3.791e-16	35.64	supercontig:LSalAtl2s:LSalAtl2s301:354064:356113:1...	[more]
EMLSAG00000012651	9.715e-15	33.33	supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 ge...	[more]
EMLSAG00000005620	1.872e-14	43.04	supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1...	[more]
EMLSAG00000008261	1.147e-13	47.76	supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 ...	[more]
EMLSAG00000010267	3.228e-12	35.96	supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1...	[more]

Pages

BLAST of orphan nuclear receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1710719\|sp\|P51128.1\|RXRA_XENLA	4.011e-41	28.50	RecName: Full=Retinoic acid receptor RXR-alpha; Al...	[more]
gi\|74902124\|sp\|Q5I7G2.1\|RXR_LYMST	5.909e-41	28.89	RecName: Full=Retinoic acid receptor RXR; AltName:...	[more]
gi\|464702\|sp\|Q05343.1\|RXRA_RAT	7.186e-41	28.75	RecName: Full=Retinoic acid receptor RXR-alpha; Al...	[more]
gi\|133701\|sp\|P19793.1\|RXRA_HUMAN	8.434e-41	28.75	RecName: Full=Retinoic acid receptor RXR-alpha; Al...	[more]
gi\|75017953\|sp\|Q8T5C6.1\|RXR_BIOGL	8.886e-41	28.89	RecName: Full=Retinoic acid receptor RXR; AltName:...	[more]
gi\|133702\|sp\|P28700.1\|RXRA_MOUSE	8.936e-41	28.75	RecName: Full=Retinoic acid receptor RXR-alpha; Al...	[more]
gi\|1710810\|sp\|P51129.1\|RXRG_XENLA	4.147e-40	27.48	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|52783417\|sp\|Q90415.1\|RXRAB_DANRE	5.274e-40	29.77	RecName: Full=Retinoic acid receptor RXR-alpha-B; ...	[more]
gi\|147732610\|sp\|A2T929.2\|RXRAA_DANRE	6.658e-40	27.99	RecName: Full=Retinoic acid receptor RXR-alpha-A; ...	[more]
gi\|133700\|sp\|P28701.1\|RXRG_CHICK	1.190e-39	28.50	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]

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BLAST of orphan nuclear receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|985401230\|ref\|XP_015368325.1\|	1.358e-172	55.58	PREDICTED: hormone receptor 4-like isoform X2 [Diu...	[more]
gi\|1101367760\|ref\|XP_018915169.1\|	3.801e-171	58.00	PREDICTED: hormone receptor 4 isoform X2 [Bemisia ...	[more]
gi\|1101367758\|ref\|XP_018915168.1\|	8.641e-171	58.00	PREDICTED: hormone receptor 4 isoform X1 [Bemisia ...	[more]
gi\|641663899\|ref\|XP_008182814.1\|	1.660e-169	55.60	PREDICTED: hormone receptor 4 isoform X2 [Acyrthos...	[more]
gi\|321456767\|gb\|EFX67867.1\|	1.892e-169	62.00	hypothetical protein DAPPUDRAFT_203579 [Daphnia pu...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold491_size156641	supercontig	scaffold491_size156641:8337..11777 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	F:binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold491_size156641-snap-gene-0.24-mRNA-1	maker-scaffold491_size156641-snap-gene-0.24-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold491_size156641:8337..11777+

gene from alignment at scaffold491_size156641:8337..11777+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold491_size156641-snap-gene-0.24 ID=maker-scaffold491_size156641-snap-gene-0.24|Name=orphan nuclear receptor|organism=Tigriopus kingsejongensis|type=gene|length=3441bp|location=Sequence derived from alignment at scaffold491_size156641:8337..11777+ (Tigriopus kingsejongensis)
GTGACACGAACGAAGGGACGTATGATGCCGACCTGCAGCATAATTCCGTG
AGCAACAGTCTGAGCGTGAGTTCCTCGTTCATGGGCGTGTCGCCCATGTC
CGAGAAACCGCCGTCCATCCACGAAAGCAGTCTCATAACCAAAGACCATC
ATCACCACCACCACCATCATCGGAACACCTTGAAATGGGCCAAGAACTGC
AATCTGGCCGTGTCCACATCACTCCCAACCTCGGTCCCTGCGCCAGAATC
TCCTCCCAAGTACATGGTTTCCCCACTCTATCCCAACTCCATGGTGGTTA
GACAGGACGAACATCACTATGAGGAGCACCATAGGCTCTCCGAGCAGGCC
CAGAAGATCTCTTCGGCTGTGGATGGAATGCTTAGTTTGCAGTCCGCGAA
TACCGTCGCCCGCGTCTCGTCCTCGGGGTCGTCGATGGAAAAAGTATTCC
CCGTGTGTCCCAGATCCGAGGGCTCGTCCTACACCCGGGGCATTCCCATC
AACATGGAAAAGCTATGGGACGGAGATCGGACCCAACTCCCAGCCAACGC
CAAGAAACTGACTGAGGTAACAATCCCGGGCCATGGCCCTCTCGAGACCC
GTGGGCTGTGATGGCCCAGTCTGATCTGTGTATAAACCGTGGATCTTTTT
GTGAATACAGGGAACAACGCAGGAGGGTGACGACCATATTGAGGAGGAAT
CACTGATATGCATGATTTGCGAAGACAAAGCGACTGGTCTTCATTATGGA
ATCATAACGTGTGAAGGGTGAGTGGATTTGTATGCGGGCTATTTCTGCCA
TTTACTCCATCGGGTGCCCAACCCCCTAAGTTAGCTTGTCCATGAAGTAA
GGAGCGAAAACGAATTGATCCCATAGTGAGTTGAAAAGTTGGGGTCTGAC
TGAAATTAATGGAGGGAATCGACCGGAATGAATCTTAGCTAGAGTGTCCT
TGGGGTTGATATCTCTCTTTTTTGGCCCGGCTGATCTGAGCTGGCCGATA
GCAGTCCTATGTGCCAAGTGAACTGATTTGTGTTATTTTTCTTTCATGCT
TAAAGATGCAAGGGATTTTTCAAGAGAACTGTCCAGAACAAACGCATCTA
TAATTGTGTGGCCGATGGGCATTGTGAAATCAACAAAGCGCAAAGGAATC
GATGCCAATATTGTCGGTTTCAAAAGTGTCTTCATAAGGGAATGGTTCTT
GCAGGTAATTGCCTATCTCACTGGCAACCCAATGTCGGCCCAATCAATGC
TGGTTCCATTTCTAGCTGTTCGTGAAGACCGAATGCCTGGTGGTCGAAAT
TCGGGGGCTGTCTACAACATGTATAAGGTGAGTGTACGAAAGCCGGTCGG
TCACCTTATGCCCCCCCCCCTGCAGGCCATAATGTGGGTGATTCCATTCC
AGGTCAAGTACAAAAAGAATAAGAACAAATCATCCGGGAAGACAGGGGGC
GAGATTTCCACCAAGGAGACGCATCAGTTTGACATGCCCTGTCAAAATAT
AAACATACTTCGAGCTGCGTTAACTGGAAACTCTCAGGTAACGATTCCTA
GCGTCAGGAGGATTGAATGGTTTGCACACCAAGTGTCTGCACCATGCTCC
GGTTTTGAGATTGGGCTAGCTTTTGATCACGTCGCTTTTCTCTGCAGATT
TCCACACAATATAAACACTTATTTGTCAATCGAGATGCCGAAAAGAATTC
CTTTGATCACATGCAACTGATCAATAATCTCATTGTTTGCGATGACTTTG
AAGACATTGCCACTTTGAAGGTGAGTGTGAATGGCAGCCCAAGTGTTCAT
TGGAACACAGATGTGAAAGCGATGGATCTCCACGAGGGATTAGAGATGGT
TTCGTCATGGGTTCGGTTCCTTTCTAGAACATCGGCGAACTTCTCAATCA
AAACACATCTGACTTGCAACAGAAACTTTGTCAAATTGGAGATTCAATTG
TGTACAAACTAGTACAGTGGACCAGGCGGCTGCCATTCTATCACGAGCTT
CCGGTGGACGTGCACACAAAATTGCTAACTCACAAATGGCATGAACTACT
GGTTCTGACCACGTCCGCGTATCAAGCAATACACGGGTCCACACGAATGG
GCACAATTAGAACGGACGGGGAAAAGGCCGAGTTGCACCAGGAGGTAAGC
CCTACGATTCTTCTTGTAGACCAGAATGGAGTGTTATCCCAGTTCCATGT
TGTTTTATTTCACTCACGCTACCTTTCCATTGCTACCTCAGGTGTCGACG
AATCTCGTGACTCTGCAAACCTGTCTGACGTCAATGATGGGCAAGCCAAT
CACCATGGATCAACTGAGACAAGATGTCGGGAACATGGTGGAAAAAATCA
CCCGAGTCATAGCCCTTTTCCGACAATGCAAGCTGAAAATGGAAGAATAT
GTTTGTCTCAAAGTCATCGCAATGGTTGAAAATTCCGGTACGACCCCCCC
TCCCCCTAGTCGCCATCACGATATCAAGTCTCACGCCCGTTTCTTCCCTC
ACTTTACAGACAGTACTTCACCGTCCTTGGTGCCAATTTACAATAGATAC
CTTAAGTGCCTCCGAGCCTATGCAACACAACACCATCCACTGGAGCCTGA
TCGAGTGGACAAACTACTAGTCCGATTGCCTGAGGTACGTGTCCGGGGCC
AGGGGGAGTAGTACGCAGGCATCATGATCTGACGGTTTCCATCGATTCTC
TTGCAGGTTCGTGTGGCAGCCGCATTACTTTTAGAAAGTAAAATGTTTTA
TGTGCCATTCTTACTTAATTCGTCCATTGTTGGTTCTTAGAGAGCAATCT
GCGAGGGTGGGATTGGCTCGTCTGGGGACGACTTATTTATTGCTCTCAAC
ATGTTAGTAGGTTTATAAGGTTTGCCAGTGTTTTTTACATTTTTGTATGT
TGTTAATAATAAATTTCACTTCGCATCCTGCGGGAGACATTTTGAATGAG
CCCTGTGTTGGTGCCTTTGTTTCATCTGTCTCACCCGCCGGCCTCGTCGT
GGGTGAGTCGATGCAGTTGGAGCTTCGCCTCCTCGATGACTTCGGGGGGA
AACTTGGCCAACTCCGCGACCTCCACGCCGAAACTTTGGGTAGCTCGGCC
CGCCACAATCTGGTAGAGGAGGGTGAAGCTACCATCTTGCACGGCCGCGG
CGCAGTTCATGTTGAAACAAGTCGGATGGCTCTGGTCGATGTCCGACAGC
TCGTGAAAGTGGGTGGCGAACAAGGTCACGGCCCGGATCTGGCTCACGAT
GTGCTCGCAAATGGCCCAAGCCAGCCCGAAGCCGTCTTGAGTCGAGGTGC
CCCGACCCAGTTCGTCGATGAGCACGAGGCTCTTCTCGGTCGAGTGGTTG
AGGATGGCCTTGATGTCGAGCATCTCCTTGAGGAAGGTGGACGAGCCGTC
CACGAGCGAGTCGTCGGCCCCAATCCGGACCGAAATGGCGT

Synonyms

The feature 'orphan nuclear receptor' has the following synonyms


Synonym
Tk05482

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