orphan nuclear receptor, maker-scaffold491_size156641-snap-gene-0.24 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000000733 (supercontig:LSalAtl2s:LSalAtl2s1117:84476:96586:1 gene:EMLSAG00000000733 transcript:EMLSAT00000000733 description:"maker-LSalAtl2s1117-snap-gene-1.23") HSP 1 Score: 93.5893 bits (231), Expect = 3.461e-20 Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 0 Query: 191 ESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGM 260 E + C +C DK++G+HYG+ITCEGCKGFF+R+ + Y C +C +++ RNRCQ+CR QKCL GM Sbjct: 43 EIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRQKNCIVDRVNRNRCQFCRLQKCLALGM 112
BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000009940 (supercontig:LSalAtl2s:LSalAtl2s649:353131:422335:-1 gene:EMLSAG00000009940 transcript:EMLSAT00000009940 description:"maker-LSalAtl2s649-augustus-gene-4.7") HSP 1 Score: 92.4337 bits (228), Expect = 8.765e-20 Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 0 Query: 191 ESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGR 274 + + C++C DK++G HYG TCEGCK FFKR+V+ Y C C I++ RN+CQ+CR +KC+ GM AV+ R+P + Sbjct: 430 QDISCVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRALTYQCRGSRSCPIDQHHRNQCQHCRLKKCIKMGMRKEAVQRGRIPASQ 513
BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000007894 (supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1 gene:EMLSAG00000007894 transcript:EMLSAT00000007894 description:"maker-LSalAtl2s466-augustus-gene-2.7") HSP 1 Score: 90.1225 bits (222), Expect = 1.724e-19 Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 0 Query: 195 CMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVA--DGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSS 295 C +C D ++G HYGI C+GC GFFKR+++ R+Y C A +G C ++K RN+C+ CR ++C+ GM AV+ +R G RNS M + +K++ N ++ Sbjct: 34 CKVCTDHSSGKHYGIFACDGCAGFFKRSIRRNRLYVCKAKSEGSCLVDKTHRNQCRACRLKRCVDVGMNKDAVQHER--GPRNSTLRRQM-SLYFKEHSNNNT 133
BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000007741 (supercontig:LSalAtl2s:LSalAtl2s450:172104:174744:-1 gene:EMLSAG00000007741 transcript:EMLSAT00000007741 description:"maker-LSalAtl2s450-snap-gene-2.9") HSP 1 Score: 89.7373 bits (221), Expect = 5.124e-19 Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = 0 Query: 195 CMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVAD----GHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMP 271 C +C D+++G HYGI +C+GC GFFKR++ +RIY C A G C I+K RN+C+ CR +KC M AV+ +R P Sbjct: 108 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRQRIYTCKAQGEFKGRCPIDKTHRNQCRACRLKKCFDCSMNKDAVQHERGP 188
BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0") HSP 1 Score: 87.0409 bits (214), Expect = 2.461e-18 Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 0 Query: 194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDR 269 +C++C D+A+G HY + CEGCKGFF+R++ Y C +G CEI+ R +CQ CR +KC GM V +R Sbjct: 172 LCLVCGDRASGYHYNALACEGCKGFFRRSITKNSNYTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPER 247
BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000005619 (supercontig:LSalAtl2s:LSalAtl2s301:354064:356113:1 gene:EMLSAG00000005619 transcript:EMLSAT00000005619 description:"maker-LSalAtl2s301-augustus-gene-3.7") HSP 1 Score: 80.1073 bits (196), Expect = 3.791e-16 Identity = 36/101 (35.64%), Postives = 54/101 (53.47%), Query Frame = 0 Query: 170 PANAKKLTEGTTQEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKR-IYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDR 269 P+ +L + E D ++ + +C +CE+ A G H+G TCEGCK FF RT N+ I C + C ++K R C+ CR +KC+ GM + R R Sbjct: 34 PSIGNQLEQPPKFEAMDPMQNQ--LCRVCEEPAAGFHFGAFTCEGCKSFFGRTCNNQSVIQECKNNYRCVVDKKNRTACKACRLRKCIMVGMSKSGSRYGR 132
BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24") HSP 1 Score: 75.8702 bits (185), Expect = 9.715e-15 Identity = 39/117 (33.33%), Postives = 56/117 (47.86%), Query Frame = 0 Query: 193 LICMICEDKATG-LHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETH 308 ++C +C DKA +HYG I C C+ FF+R+V Y C D C I R CQ+CR++KCL GM + V + RN +KY + + GK +T E + Sbjct: 89 MVCNVCGDKAPDHIHYGGIACFSCRAFFRRSVPKHTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRN--------LIKYVRKNKTTCGKNVNNNNTIEVN 197
BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000005620 (supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1 gene:EMLSAG00000005620 transcript:EMLSAT00000005620 description:"maker-LSalAtl2s301-augustus-gene-5.4") HSP 1 Score: 71.2478 bits (173), Expect = 1.872e-14 Identity = 34/79 (43.04%), Postives = 42/79 (53.16%), Query Frame = 0 Query: 194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKR---IYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDR 269 IC +C++ A G H+G TCEGCK FF RT I C + C I+K R C+ CR +KCL GM A R R Sbjct: 37 ICRVCDEPAAGYHFGAFTCEGCKSFFGRTCGKSNLNSISECKNNYSCVIDKKNRTSCKACRLRKCLRVGMSKAGSRYGR 115
BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3") HSP 1 Score: 72.4034 bits (176), Expect = 1.147e-13 Identity = 32/67 (47.76%), Postives = 37/67 (55.22%), Query Frame = 0 Query: 195 CMICEDKATG-LHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGM 260 C IC D A +HYG I C C+ FF+R V Y+C D C I K R CQ+CRF KCL GM Sbjct: 63 CHICSDTANDHIHYGAIACXSCRAFFRRAVICNAEYHCSRDKTCFITKETRKHCQFCRFNKCLEAGM 129
BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19") HSP 1 Score: 67.781 bits (164), Expect = 3.228e-12 Identity = 41/114 (35.96%), Postives = 55/114 (48.25%), Query Frame = 0 Query: 194 ICMICEDKATG-LHYGIITCEGCKGFFKRTVQN---KRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEIS 303 +C IC + A ++YG C C+ FF+R+VQN K+ C C IN R CQ CRFQKC+ GM ++ V DR + S N K + N G T E+S Sbjct: 106 LCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSKKSAMTLNNNKPPL-PSFNDPEGLTSIEVS 218
BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|52788288|sp|Q90416.2|RXRGA_DANRE (RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName: Full=Nuclear receptor subfamily 2 group B member 3-A; AltName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Retinoid X receptor alpha; AltName: Full=Retinoid X receptor gamma-A) HSP 1 Score: 150.984 bits (380), Expect = 1.238e-38 Identity = 105/393 (26.72%), Postives = 173/393 (44.02%), Query Frame = 0 Query: 194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581 IC IC D+++G HYG+ +CEGCKGFFKRT++ Y C + C+I+K QRNRCQYCR+QKCL GM AV+E+ + + ++ E+ + + +MP + I L A L E + +M+ ++ +T+D +CQ D ++ LV+W +R+P + +LP+D LL W+ELL+ + S + + G + G LH S+ VG++ +++ T +++ R ++ E CL+ I + N D+ ++PS V + + L Y ++P +P R KLL+RLP +R LE F+ Sbjct: 116 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQKCLAMGMKREAVQEE----------------------RQRGRERSDNEVDSSSSFNEEMPVEKI--LDAELA-----------------VEPKTEAYME---------------------SSMSNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSV---TVKDGILLATG----LHVHRSS--------------------AHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF-NPDAKGLSNPSEVEALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFF 418
BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE (RecName: Full=Retinoic acid receptor RXR-beta-A; AltName: Full=Nuclear receptor subfamily 2 group B member 2-A; AltName: Full=Retinoid X receptor beta-A) HSP 1 Score: 151.369 bits (381), Expect = 1.534e-38 Identity = 110/394 (27.92%), Postives = 179/394 (45.43%), Query Frame = 0 Query: 194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQL-RQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLVPIY-NRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581 +C IC D+++G HYG+ +CEGCKGFFKRTV+ Y C + C ++K QRNRCQYCR+QKCL GM V+++R V+ ++ +NK + GE+ + +MP + IL A + E L G + +D +CQ D ++ LV+W +R+P + EL +D LL W+ELL+ + S +++I + + G + G LH V + ++ +G + +VG + +++ T +++ R ++ E CL+ I + N D+ +SPS V + + L AY Q +P + R KLL+RLP +R LE F+ Sbjct: 124 LCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRCQYCRYQKCLAMGMKREVVQDER------------QRSVQEERQRNK---ERDGEVESSSAANEEMPVE--KILEAEMA-------------------------------------VEQKTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELSLDDQVILLRAGWNELLIASFS-HRSI--TVKDGILLATG----LH-------VHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILF-NPDAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFF 448
BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE (RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName: Full=Nuclear receptor subfamily 2 group B member 3-B; AltName: Full=Retinoid X receptor gamma-B) HSP 1 Score: 149.058 bits (375), Expect = 6.688e-38 Identity = 106/393 (26.97%), Postives = 163/393 (41.48%), Query Frame = 0 Query: 194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSD----STSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581 IC IC D+++G HYG+ +CEGCKGFFKRT++ Y C C I+K QRNRCQYCR+QKCL GM AV+E+R G K+ E+ T DMP I ++++S + K + NS T+D +C D ++ LV+W +R+P + +LP+D LL W+ELL+ + S H S + G +H+ + + VG++ ++ T +++ + ++ E CL+ I + N D S S + + + L Y Q +P +P R KLL+RLP +R LE F+ Sbjct: 127 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDIKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKE----------------------KSDTEVETTSRFNEDMPVDKIL--------DAELSVEPKTETYTESSPSNS--------------------------------TNDPVTNICHAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFS-----HRSITVKDGILLGTGLHVHRSSAHS----------------------AGVGSIFNRVLTELVSKMKDMQMDKTELGCLRAIVLF-NPDAKGLSNSLEVEALREKVYASLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFF 429
BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|167016572|sp|Q0GFF6.2|RXRG_PIG (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 148.673 bits (374), Expect = 9.118e-38 Identity = 109/393 (27.74%), Postives = 174/393 (44.27%), Query Frame = 0 Query: 194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581 IC IC D+++G HYG+ +CEGCKGFFKRT++ IY C + C I+K QRNRCQYCR+QKCL GM AV+E+R +S + E + DMP + IL A L + + S+ M + N +T+D +C D ++ LV+W +R+P + +L ++ LL W+ELL+ + S ++++ S + G + G LH S+ VG++ +++ T +++ + ++ E CL+ I + N D+ ++PS V + + L AY Q +P +P R KLL+RLP +R LE F+ Sbjct: 138 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER----------------------QRSRERAESEAECASSGHEDMPVE--RILEAELA---------------VEPKTESYGDMNMEN-----------------------STNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFS-HRSV--SVQDGILLATG----LHVHRSS--------------------AHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF-NPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 440
BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|75062013|sp|Q5REL6.1|RXRG_PONAB (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 148.673 bits (374), Expect = 1.006e-37 Identity = 109/393 (27.74%), Postives = 174/393 (44.27%), Query Frame = 0 Query: 194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581 IC IC D+++G HYG+ +CEGCKGFFKRT++ IY C + C I+K QRNRCQYCR+QKCL GM AV+E+R +S + E + DMP + IL A L + + S+ M + N +T+D +C D ++ LV+W +R+P + +L ++ LL W+ELL+ + S ++++ S + G + G LH S+ VG++ +++ T +++ + ++ E CL+ I + N D+ ++PS V + + L AY Q +P +P R KLL+RLP +R LE F+ Sbjct: 138 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER----------------------QRSRERAESEAECASSGHEDMPVE--RILEAELA---------------VEPKTESYGDMNMEN-----------------------STNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFS-HRSV--SVQDGILLATG----LHVHRSS--------------------AHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF-NPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 440
BLAST of orphan nuclear receptor vs. nr
Match: gi|985401230|ref|XP_015368325.1| (PREDICTED: hormone receptor 4-like isoform X2 [Diuraphis noxia] >gi|985401232|ref|XP_015368326.1| PREDICTED: hormone receptor 4-like isoform X2 [Diuraphis noxia] >gi|985401234|ref|XP_015368327.1| PREDICTED: hormone receptor 4-like isoform X2 [Diuraphis noxia]) HSP 1 Score: 523.472 bits (1347), Expect = 1.358e-172 Identity = 274/493 (55.58%), Postives = 335/493 (67.95%), Query Frame = 0 Query: 154 IPINMEKLWDGDRTQLPANAK------KLTEGT-----------------------TQEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGK----------TGGEISTKETHQFDMPCQ------NINILRAALTGNSQISTQYKHL----FVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHG------STRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMV-ENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590 +P+NME+LW GD +QLP A LT T +E D+ +E+ ++CMIC+D+ATGLHYGIITCEGCKGFFKRTVQN+RIY C+A+G CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKVKYKK + +G+ T ++T +T D N IL+ ALT S++ + L +RD + + +I NL+ CD+F+DIATL+N+ +LL N SDL KL QIGDSIVYKLVQWT+RLPFY ELPV+VHT+LLTHKWHELLVLTTSAYQAIHG ST M R E +E HQEV NL LQ CL+SMMGKPITMDQLRQDVG MVEKIT V +FR+ KL+MEEYVCLKVI M+ +N+ +T+ L I RY CL+ Y P++P+R+ LL RLPE++ AA+LLLESKMFYVPFLLNS+I Sbjct: 447 VPLNMERLWAGDLSQLPVAATHQMHALNLTANTGPGWPMAGSNNDNKSAPVNAYHQMEEADE--QEQPMVCMICDDRATGLHYGIITCEGCKGFFKRTVQNRRIYTCIAEGTCEITKAQRNRCQYCRFKKCIGQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKKRPPKNGQVKMEKSVACTTASTMTTIKTENQDNNSSSMSTLVNGTILKTALTNPSEVVYLRQRLDNAVSSSRDRTFSIEATVNMIKNLMDCDEFQDIATLRNMEDLLEHN-SDLSAKLMQIGDSIVYKLVQWTKRLPFYLELPVEVHTRLLTHKWHELLVLTTSAYQAIHGPQKIWNSTNMNGDR--NEDSEFHQEVFQNLCILQNCLSSMMGKPITMDQLRQDVGVMVEKITHVTLMFRRVKLRMEEYVCLKVIIMLTQNNGNTTSELETIQERYTSCLKTYVEHTFPMQPNRLQDLLQRLPEIQSAASLLLESKMFYVPFLLNSTI 934
BLAST of orphan nuclear receptor vs. nr
Match: gi|1101367760|ref|XP_018915169.1| (PREDICTED: hormone receptor 4 isoform X2 [Bemisia tabaci]) HSP 1 Score: 520.005 bits (1338), Expect = 3.801e-171 Identity = 279/481 (58.00%), Postives = 339/481 (70.48%), Query Frame = 0 Query: 155 PINMEKLWDGDRTQLPA-------NAKKLTEGTTQE----------GDDHI--------------------EEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNK-NKSSGKTGGEISTKETHQFDMPCQNIN--ILRAALTGNSQISTQYKHL--FVNRDAEKN-SFDH-MQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPS-LVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590 P+NMEKLW GD +QLPA N G GD H +E+ +ICMICEDKATGLHYGIITCEGCKGFFKRTVQN+R+Y CVADG CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKVKYKK+K N +G+ E + + +P +N IL+ ALT S++ + L V+ ++N + D + +I L+ CD+F+DIATL+N+ +LL ++ SDL KL +IGDSIVYKLVQWT+RLPFY ELPV+VHTKLLTHKWHELLVLTTSAYQAIHG+ ++G+ TDG +A+ Q+VS NL TLQTCLTSMMG+PITMDQLRQDVG MVEKIT V +FR+ KL+MEEYVCLKVI M+ S+ S L I RY+ CL+ Y P +P+R LLVRLPEV+ AA+LLL+SKMFYVPFLLNS+I Sbjct: 463 PLNMEKLWAGDLSQLPASQQIQALNLSSYGAGPPSSCWPVPYIKANGDAHAAGHALNPGPVVQKIHEETEEDEQPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGICEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKNTRNGQLKLEGKPNKGPEPTIPAHLVNGTILKTALTNPSEVVHLRQRLDNTVSSSRDRNLTLDATLSMIQGLVDCDEFQDIATLQNLDDLL-EHKSDLSDKLMKIGDSIVYKLVQWTKRLPFYLELPVEVHTKLLTHKWHELLVLTTSAYQAIHGAHKLGSTSTDGTEADFTQQVSNNLCTLQTCLTSMMGRPITMDQLRQDVGLMVEKITHVTLMFRRIKLRMEEYVCLKVIIMLNPSNRAGTSELESILERYMSCLKTYVENTAPQQPNRFHDLLVRLPEVQSAASLLLDSKMFYVPFLLNSTI 942
BLAST of orphan nuclear receptor vs. nr
Match: gi|1101367758|ref|XP_018915168.1| (PREDICTED: hormone receptor 4 isoform X1 [Bemisia tabaci]) HSP 1 Score: 519.235 bits (1336), Expect = 8.641e-171 Identity = 279/481 (58.00%), Postives = 339/481 (70.48%), Query Frame = 0 Query: 155 PINMEKLWDGDRTQLPA-------NAKKLTEGTTQE----------GDDHI--------------------EEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNK-NKSSGKTGGEISTKETHQFDMPCQNIN--ILRAALTGNSQISTQYKHL--FVNRDAEKN-SFDH-MQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPS-LVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590 P+NMEKLW GD +QLPA N G GD H +E+ +ICMICEDKATGLHYGIITCEGCKGFFKRTVQN+R+Y CVADG CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKVKYKK+K N +G+ E + + +P +N IL+ ALT S++ + L V+ ++N + D + +I L+ CD+F+DIATL+N+ +LL ++ SDL KL +IGDSIVYKLVQWT+RLPFY ELPV+VHTKLLTHKWHELLVLTTSAYQAIHG+ ++G+ TDG +A+ Q+VS NL TLQTCLTSMMG+PITMDQLRQDVG MVEKIT V +FR+ KL+MEEYVCLKVI M+ S+ S L I RY+ CL+ Y P +P+R LLVRLPEV+ AA+LLL+SKMFYVPFLLNS+I Sbjct: 469 PLNMEKLWAGDLSQLPASQQIQALNLSSYGAGPPSSCWPVPYIKANGDAHAAGHALNPGPVVQKIHEETEEDEQPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGICEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKNTRNGQLKLEGKPNKGPEPTIPAHLVNGTILKTALTNPSEVVHLRQRLDNTVSSSRDRNLTLDATLSMIQGLVDCDEFQDIATLQNLDDLL-EHKSDLSDKLMKIGDSIVYKLVQWTKRLPFYLELPVEVHTKLLTHKWHELLVLTTSAYQAIHGAHKLGSTSTDGTEADFTQQVSNNLCTLQTCLTSMMGRPITMDQLRQDVGLMVEKITHVTLMFRRIKLRMEEYVCLKVIIMLNPSNRAGTSELESILERYMSCLKTYVENTAPQQPNRFHDLLVRLPEVQSAASLLLDSKMFYVPFLLNSTI 948
BLAST of orphan nuclear receptor vs. nr
Match: gi|641663899|ref|XP_008182814.1| (PREDICTED: hormone receptor 4 isoform X2 [Acyrthosiphon pisum]) HSP 1 Score: 515.768 bits (1327), Expect = 1.660e-169 Identity = 273/491 (55.60%), Postives = 333/491 (67.82%), Query Frame = 0 Query: 154 IPINMEKLWDGDRTQLPANAK------KLTEGTT-------QEGDDH--------------IEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEIST---------------KETHQFDMPCQ-NINILRAALTGNSQISTQYKHL----FVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHG------STRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMV-ENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590 +P+NME+LW GD +QLP A LT T GD+ +E+ ++CMIC+D+ATGLHYGIITCEGCKGFFKRTVQN+RIY C+A+G CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKVKYKK + +G+ E S ++ + M N IL+ ALT S++ + L +RD + + +I NL+ CD+F+DIATL+N+ +LL N SDL KL QIGDSIVYKLVQWT+RLPFY ELPV+VHT+LLTHKWHELLVLTTSAYQAIHG ST M R E +E HQEV NL LQ CL+SMMGKPITMDQLRQDVG MVEKIT V +FR+ KL+MEEYVCLKVI M+ +N+ +T+ L I RY CL+ Y P++P+R+ LL RLPE++ AA+LLLESKMFYVPFLLNS+I Sbjct: 457 VPLNMERLWAGDLSQLPVAATHQMHALNLTANTGPGWPMAGSNGDNKSAPVNAYHQMEEAEEQEQPMVCMICDDRATGLHYGIITCEGCKGFFKRTVQNRRIYTCIAEGTCEITKAQRNRCQYCRFKKCIGQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKKRPPKNGQVKMEKSVTCTTASTMTTIKTENQDNNSSSMSTLVNGTILKTALTNPSEVVYLRQRLDNAVSSSRDRTFSIEATVNMIKNLMDCDEFQDIATLRNMEDLLEHN-SDLSAKLMQIGDSIVYKLVQWTKRLPFYLELPVEVHTRLLTHKWHELLVLTTSAYQAIHGPQKIWNSTNMNGDR--NEDSEFHQEVFQNLCILQNCLSSMMGKPITMDQLRQDVGVMVEKITHVTLMFRRLKLRMEEYVCLKVIIMLTQNNGNTTSELETIQERYTSCLKTYVEHTFPMQPNRLQDLLQRLPEIQSAASLLLESKMFYVPFLLNSTI 944
BLAST of orphan nuclear receptor vs. nr
Match: gi|321456767|gb|EFX67867.1| (hypothetical protein DAPPUDRAFT_203579 [Daphnia pulex]) HSP 1 Score: 508.449 bits (1308), Expect = 1.892e-169 Identity = 261/421 (62.00%), Postives = 312/421 (74.11%), Query Frame = 0 Query: 182 QEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKY---KKNKNKS----SGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHL----FVNRDAEKNSFD-HMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590 QE D E+ +ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKR+Y CVA+G+CEI KAQRNRCQYCRFQKCL +GMVLAAVREDRMPGGRNSGAVYN+YKVKY KKN NKS + T G ++ ++ Q N NIL+ ALT S++ + L +RDA ++ M I LI CD+FEDIATLK + ELL+ ++L KLCQIGDSIVYKLVQWT+RLPFY ELPV+VHT+LLTHKWHELLVLTTSAYQAIHG + + E + Q+VS NLVTLQTCL +MMG+P+T+DQLRQDVG MVE+IT V + ++ +L+MEEYVCLKVIAM+ + L I RY++CL++Y ++P P R LL RLPEV+ AA LLLESKMFYVPFLLNS+I Sbjct: 316 QEDD---EDTPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRVYTCVAEGNCEITKAQRNRCQYCRFQKCLAQGMVLAAVREDRMPGGRNSGAVYNLYKVKYRKHKKNNNKSPPGTTANTNGGVTAQQQQQVPR-IANGNILKTALTNPSEVLHLRRRLESAVTSSRDAISMPYETAMPTICTLIYCDEFEDIATLK-LDELLD-TKAELSDKLCQIGDSIVYKLVQWTKRLPFYSELPVEVHTRLLTHKWHELLVLTTSAYQAIHGPRKTWSGPEPTEH-DFVQQVSANLVTLQTCLAAMMGRPLTLDQLRQDVGLMVERITHVTMMLQRSQLRMEEYVCLKVIAMLSQRNV---ELEAIQERYMQCLQSYVEHNYPQSPGRFSDLLTRLPEVQSAATLLLESKMFYVPFLLNSAI 726 The following BLAST results are available for this feature:
BLAST of orphan nuclear receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of orphan nuclear receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of orphan nuclear receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold491_size156641:8337..11777+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold491_size156641-snap-gene-0.24 ID=maker-scaffold491_size156641-snap-gene-0.24|Name=orphan nuclear receptor|organism=Tigriopus kingsejongensis|type=gene|length=3441bp|location=Sequence derived from alignment at scaffold491_size156641:8337..11777+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'orphan nuclear receptor' has the following synonyms
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