orphan nuclear receptor, maker-scaffold491_size156641-snap-gene-0.24 (gene) Tigriopus kingsejongensis

Overview


Name	orphan nuclear receptor
Unique Name	maker-scaffold491_size156641-snap-gene-0.24
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22")

HSP 1 Score: 65.855 bits (159), Expect = 1.146e-11
Identity = 41/119 (34.45%), Postives = 55/119 (46.22%), Query Frame = 0

Query:  171 ANAKKLTEGTTQEGDDHI--EEESL--ICMICEDKATG-LHYGIITCEGCKGFFKRTVQN---KRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYN 281
             N  +L   T  E    I    E+L  +C IC + A   ++YG   C  C+ FF+R+VQN   K+   C     C IN   R  CQ CRFQKC+  GM  + V  D     + S  + N
Sbjct:   78 VNFNELNSATLSEPSSQIIIRREALPRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSKKSAMILN 196

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5")

HSP 1 Score: 63.1586 bits (152), Expect = 1.057e-10
Identity = 35/87 (40.23%), Postives = 45/87 (51.72%), Query Frame = 0

Query:  194 ICMICEDKATGL-HYGIITCEGCKGFFKRTVQ--NKRIYNCV-----ADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAV--REDRM 270
            +C IC D A    HYG I C  C+ FF RTV    +  + CV       G C I KA R  CQ+CR++ CL  GM  + V   E+R+
Sbjct:  136 VCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEERL 222

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000003771 (supercontig:LSalAtl2s:LSalAtl2s2039:3647:12796:1 gene:EMLSAG00000003771 transcript:EMLSAT00000003771 description:"maker-LSalAtl2s2039-snap-gene-0.4")

HSP 1 Score: 63.1586 bits (152), Expect = 1.249e-10
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0

Query:  216 KGFFKRTVQNKRIYN-CVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMP 271
            +GFF+R++Q K  Y  C  +  C I +  RNRCQYCR +KC+  GM   AVR  R+P
Sbjct:   17 QGFFRRSIQQKIQYRPCTKNQQCNIQRINRNRCQYCRLKKCIASGMSRDAVRFGRVP 73

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000011488 (supercontig:LSalAtl2s:LSalAtl2s794:281844:292908:-1 gene:EMLSAG00000011488 transcript:EMLSAT00000011488 description:"maker-LSalAtl2s794-snap-gene-2.22")

HSP 1 Score: 56.9954 bits (136), Expect = 5.153e-9
Identity = 56/230 (24.35%), Postives = 103/230 (44.78%), Query Frame = 0

Query:  229 YNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQ---NINIL-RAALTGN---SQISTQYKHLFVNRDAEK-------NSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRM 444
            Y C  +G+C I+ A+RN+CQ CRF+KCL   M   AV+++R P      A        +   KNKSS      IS++  +      +   N  I+    LT N   + ++++ +++ +N +  K       N+  H +   +      F    T+     LL++N+      L +I   +++ +V W + +P + E  V+    LL   W  L +L T+ +  +    ++
Sbjct:    4 YVCKGNGNCTIDVARRNQCQSCRFKKCLMVKMKKEAVQQERTPRISCIKATQTT-SYTFSNLKNKSSK--ANPISSRRLYLLSTSFRESSNTEIIDDTYLTKNILSTVVNSKKENIVINIENNKKCIETILNAPSHKRTTPSF----QFYPSPTI----TLLSENS------LHEISVKLLFTVVHWAKSVPSFVEFSVNDQNVLLREAWSRLFILGTAQWAILINEEKL 216

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000007233 (supercontig:LSalAtl2s:LSalAtl2s405:178614:197434:1 gene:EMLSAG00000007233 transcript:EMLSAT00000007233 description:"maker-LSalAtl2s405-snap-gene-2.21")

HSP 1 Score: 56.225 bits (134), Expect = 1.338e-8
Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 0

Query:  226 KRIYNCVAD-GHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAV 279
            K IY C A  G C I+KA RN+CQ CR +KCLH GM   AV+ +R P  RN+  +
Sbjct:   60 KLIYRCQAGTGMCVIDKAHRNQCQACRLRKCLHMGMNKDAVQNERQP--RNTATL 112

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BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|1710719|sp|P51128.1|RXRA_XENLA (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha)

HSP 1 Score: 158.688 bits (400), Expect = 4.011e-41
Identity = 112/393 (28.50%), Postives = 172/393 (43.77%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPS----LVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRTV+    Y C     C I+K QRNRCQYCR+QKCL  GM   AV+E+R  G               ++N+N        E+ +  +   DMP + I     A+   ++  T+                                     N+G L   + SD    +CQ  D  ++ LV+W +R+P + ELP+D    LL   W+ELL+ + S +++I  + + G +   G     +   S                          VG + +++ T +++  R  ++   E  CL+ I +  N DS   S    +  +  +    L AY  Q +P +P R  KLL+RLP +R      LE   F+
Sbjct:  160 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG--------------KERNEN--------EVESSNSANEDMPVEKILEAEHAVEPKTETYTE------------------------------------ANMG-LAPNSPSDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFS-HRSI--AVKDGILLATGLHVHRNSAHSAG------------------------VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF-NPDSKGLSNPLEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 465

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BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|74902124|sp|Q5I7G2.1|RXR_LYMST (RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X receptor; Short=LymRXR)

HSP 1 Score: 157.147 bits (396), Expect = 5.909e-41
Identity = 115/398 (28.89%), Postives = 169/398 (42.46%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTS-----AYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLV----PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+A+G HYG+ +CEGCKGFFKRTV+    Y C  D +C I+K QRNRCQYCR+ KCL  GM   AV+E+R              +VK K +         GE+ +      DMP +   IL A L  + +I T         DA+K+       + N                              +CQ  D  ++ LV+W +R+P + ELP++    LL   W+ELL+   S     A   I  +T +   R+   +A                                 VG + +++ T ++A  R+ K+   E  CL+ + +  N D+   + V     +  +    L  Y    +P EP R  KLL+RLP +R      LE   F+
Sbjct:  116 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLSMGMKREAVQEERQ-------------RVKEKGD---------GEVESTSGANNDMPVE--QILEAELAVDPKIDTYI-------DAQKDP------VTN------------------------------ICQAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQA--------------------------------GVGTIFDRVLTELVAKMREMKMDKTELGCLRAVVLF-NPDAKGLTAVQEVEQLREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFF 413

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BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|464702|sp|Q05343.1|RXRA_RAT (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha)

HSP 1 Score: 157.532 bits (397), Expect = 7.186e-41
Identity = 113/393 (28.75%), Postives = 176/393 (44.78%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRTV+    Y C  +  C I+K QRNRCQYCR+QKCL  GM   AV+E+R  G                K++N++      E+ +  +   DMP +   IL A L    +  T  +                                   N+G L   + +D    +CQ  D  ++ LV+W +R+P + ELP+D    LL   W+ELL+ + S +++I  + + G +   G     +   S                          VG + +++ T +++  R  ++   E  CL+ I +  N DS   ++P+ V  +  +    L AY    +P +P R  KLL+RLP +R      LE   F+
Sbjct:  139 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG----------------KDRNEN------EVESTSSANEDMPVE--KILEAELAVEPKTETYVE----------------------------------ANMG-LNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFS-HRSI--AVKDGILLATGLHVHRNSAHSAG------------------------VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF-NPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 444

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BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|133701|sp|P19793.1|RXRA_HUMAN (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha)

HSP 1 Score: 157.532 bits (397), Expect = 8.434e-41
Identity = 113/393 (28.75%), Postives = 176/393 (44.78%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRTV+    Y C  +  C I+K QRNRCQYCR+QKCL  GM   AV+E+R  G                K++N++      E+ +  +   DMP +   IL A L    +  T  +                                   N+G L   + +D    +CQ  D  ++ LV+W +R+P + ELP+D    LL   W+ELL+ + S +++I  + + G +   G     +   S                          VG + +++ T +++  R  ++   E  CL+ I +  N DS   ++P+ V  +  +    L AY    +P +P R  KLL+RLP +R      LE   F+
Sbjct:  134 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG----------------KDRNEN------EVESTSSANEDMPVE--RILEAELAVEPKTETYVE----------------------------------ANMG-LNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFS-HRSI--AVKDGILLATGLHVHRNSAHSAG------------------------VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF-NPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 439

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BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|75017953|sp|Q8T5C6.1|RXR_BIOGL (RecName: Full=Retinoic acid receptor RXR; AltName: Full=RXR-like protein; AltName: Full=Retinoid X receptor; Short=BgRXR)

HSP 1 Score: 156.762 bits (395), Expect = 8.886e-41
Identity = 115/398 (28.89%), Postives = 168/398 (42.21%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTS-----AYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLV----PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+A+G HYG+ +CEGCKGFFKRTV+    Y C  D +C I+K QRNRCQYCR+ KCL  GM   AV+E+R              +VK K +         GE+ +      DMP +   IL A L  + +I T         DA+K+       + N                              +CQ  D  ++ LV+W +R+P + ELP++    LL   W+ELL+   S     A   I  +T +   R+   +A                                 VG + +++ T ++A  R  K+   E  CL+ + +  N D+   + V     +  +    L  Y    +P EP R  KLL+RLP +R      LE   F+
Sbjct:  116 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLSMGMKREAVQEERQ-------------RVKEKGD---------GEVESTSGANNDMPVE--QILEAELAVDPKIDTYI-------DAQKDP------VTN------------------------------ICQAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQA--------------------------------GVGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLF-NPDAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFF 413

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BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|133702|sp|P28700.1|RXRA_MOUSE (RecName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Nuclear receptor subfamily 2 group B member 1; AltName: Full=Retinoid X receptor alpha)

HSP 1 Score: 157.532 bits (397), Expect = 8.936e-41
Identity = 113/393 (28.75%), Postives = 176/393 (44.78%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRTV+    Y C  +  C I+K QRNRCQYCR+QKCL  GM   AV+E+R  G                K++N++      E+ +  +   DMP +   IL A L    +  T  +                                   N+G L   + +D    +CQ  D  ++ LV+W +R+P + ELP+D    LL   W+ELL+ + S +++I  + + G +   G     +   S                          VG + +++ T +++  R  ++   E  CL+ I +  N DS   ++P+ V  +  +    L AY    +P +P R  KLL+RLP +R      LE   F+
Sbjct:  139 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG----------------KDRNEN------EVESTSSANEDMPVE--KILEAELAVEPKTETYVE----------------------------------ANMG-LNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFS-HRSI--AVKDGILLATGLHVHRNSAHSAG------------------------VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF-NPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 444

[Close]

BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|1710810|sp|P51129.1|RXRG_XENLA (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 155.606 bits (392), Expect = 4.147e-40
Identity = 108/393 (27.48%), Postives = 177/393 (45.04%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSD----STSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRT++   +Y C     C I+K QRNRCQYCR+QKCL  GM   AV+E+R                  ++++ KS  +     ST E    +MP +   IL A L  + +I                              + F D          L  +T+D    +C   D  ++ LV+W +R+P++ +LP++    LL   W+ELL+ + S ++++  S + G +   G    +H+  + N                        VG++ +++ T +++  +   +   E  CL+ I +  N D    S +  +  +  +    L +Y  Q +P +P R  KLL+RLP +R      LE   F+
Sbjct:  145 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDSKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER------------------QRSREKSDTEAESTSSTSE----EMPVE--RILEAELAVDPKI------------------------------EAFGDAG--------LPNSTNDPVTNICHAADKQLFTLVEWAKRIPYFSDLPLEDQVILLRAGWNELLIASFS-HRSV--SVQDGILLATG--LHVHRSSAHN----------------------AGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLF-NPDAKGLSNAAEVEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFF 447

[Close]

BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|52783417|sp|Q90415.1|RXRAB_DANRE (RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName: Full=Nuclear receptor subfamily 2 group B member 1-B; AltName: Full=Retinoid X receptor alpha-B)

HSP 1 Score: 153.295 bits (386), Expect = 5.274e-40
Identity = 117/393 (29.77%), Postives = 177/393 (45.04%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRTV+    Y C  +  C I+K QRNRCQYCR+QKCL  GM   AV+E+R                  ++ K +S  + GG  +       DMP +   IL A L    +  T   ++  N     NS                                 +D    +CQ  D  ++ LV+W +R+P + +LP+D    LL   W+ELL+ + S +++I  + + G +   G    LH       V   +  T+              VG + +++ T +++  R  ++   E  CL+ I +  N DS   ++PS V  +  R    L AY    +P +P R  KLL+RLP +R      LE   F+
Sbjct:   53 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEER------------------QRAKERSEAEFGGCANE------DMPVE--KILEAELAVEPKTET---YVEANLSPSANS--------------------------------PNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFS-HRSI--AVKDGILLATG----LH-------VHRNSAHTA-------------GVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF-NPDSKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFF 356

[Close]

BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|147732610|sp|A2T929.2|RXRAA_DANRE (RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName: Full=Nuclear receptor subfamily 2 group B member 1-A; AltName: Full=RXRalpha-B; AltName: Full=Retinoid X receptor alpha-A)

HSP 1 Score: 154.066 bits (388), Expect = 6.658e-40
Identity = 110/393 (27.99%), Postives = 171/393 (43.51%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRTV+    Y C  +  C I+K QRNRCQYCR+QKCL  GM   AV+E+R                       ++  ++  E+ +  +   DMP +   IL A L    +  T   ++  N     NS                                 +D    +CQ  D  ++ LV+W +R+P + ELP+D    LL   W+ELL+ + S +++I  + + G +   G     +   S                          VG + +++ T +++  R  ++   E  CL+ I +  N DS   ++P  V  +  +    L AY    +P +P R  KLL+RLP +R      LE   F+
Sbjct:  102 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREAVQEER----------------------QRAKERSENEVESTSSANEDMPVE--KILEAELAVEPKTET---YIETNVPMPSNS--------------------------------PNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFS-HRSI--AVKDGILLATGLHVHRNSAHSAG------------------------VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF-NPDSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 407

[Close]

BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|133700|sp|P28701.1|RXRG_CHICK (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 154.066 bits (388), Expect = 1.190e-39
Identity = 112/393 (28.50%), Postives = 180/393 (45.80%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRT++   IY C  +  C I+K QRNRCQYCR+QKCL  GM   AV+E+R  G R             ++++N++   +GG          DMP +   IL A L    +                               + + D+ T          +T+D    +C   D  ++ LV+W +R+P + +L ++    LL   W+ELL+ + S ++++  S + G +   G    LH   S+                         VG++ +++ T +++  +  ++   E  CL+ I +  N D+   +SPS V  +  +    L AY  Q +P +P R  KLL+RLP +R      LE   F+
Sbjct:  142 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ-GSR-------------ERSENEAESTSGG--------SEDMPVE--RILEAELAVEPKT------------------------------EAYSDVNT--------ESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFS-HRSV--SVQDGILLATG----LHVHRSS--------------------AHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF-NPDAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 444

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|985401230|ref|XP_015368325.1| (PREDICTED: hormone receptor 4-like isoform X2 [Diuraphis noxia] >gi|985401232|ref|XP_015368326.1| PREDICTED: hormone receptor 4-like isoform X2 [Diuraphis noxia] >gi|985401234|ref|XP_015368327.1| PREDICTED: hormone receptor 4-like isoform X2 [Diuraphis noxia])

HSP 1 Score: 523.472 bits (1347), Expect = 1.358e-172
Identity = 274/493 (55.58%), Postives = 335/493 (67.95%), Query Frame = 0

Query:  154 IPINMEKLWDGDRTQLPANAK------KLTEGT-----------------------TQEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGK----------TGGEISTKETHQFDMPCQ------NINILRAALTGNSQISTQYKHL----FVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHG------STRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMV-ENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            +P+NME+LW GD +QLP  A        LT  T                        +E D+  +E+ ++CMIC+D+ATGLHYGIITCEGCKGFFKRTVQN+RIY C+A+G CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKVKYKK +   +G+          T   ++T +T   D          N  IL+ ALT  S++    + L      +RD   +    + +I NL+ CD+F+DIATL+N+ +LL  N SDL  KL QIGDSIVYKLVQWT+RLPFY ELPV+VHT+LLTHKWHELLVLTTSAYQAIHG      ST M   R   E +E HQEV  NL  LQ CL+SMMGKPITMDQLRQDVG MVEKIT V  +FR+ KL+MEEYVCLKVI M+ +N+ +T+  L  I  RY  CL+ Y     P++P+R+  LL RLPE++ AA+LLLESKMFYVPFLLNS+I
Sbjct:  447 VPLNMERLWAGDLSQLPVAATHQMHALNLTANTGPGWPMAGSNNDNKSAPVNAYHQMEEADE--QEQPMVCMICDDRATGLHYGIITCEGCKGFFKRTVQNRRIYTCIAEGTCEITKAQRNRCQYCRFKKCIGQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKKRPPKNGQVKMEKSVACTTASTMTTIKTENQDNNSSSMSTLVNGTILKTALTNPSEVVYLRQRLDNAVSSSRDRTFSIEATVNMIKNLMDCDEFQDIATLRNMEDLLEHN-SDLSAKLMQIGDSIVYKLVQWTKRLPFYLELPVEVHTRLLTHKWHELLVLTTSAYQAIHGPQKIWNSTNMNGDR--NEDSEFHQEVFQNLCILQNCLSSMMGKPITMDQLRQDVGVMVEKITHVTLMFRRVKLRMEEYVCLKVIIMLTQNNGNTTSELETIQERYTSCLKTYVEHTFPMQPNRLQDLLQRLPEIQSAASLLLESKMFYVPFLLNSTI 934

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|1101367760|ref|XP_018915169.1| (PREDICTED: hormone receptor 4 isoform X2 [Bemisia tabaci])

HSP 1 Score: 520.005 bits (1338), Expect = 3.801e-171
Identity = 279/481 (58.00%), Postives = 339/481 (70.48%), Query Frame = 0

Query:  155 PINMEKLWDGDRTQLPA-------NAKKLTEGTTQE----------GDDHI--------------------EEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNK-NKSSGKTGGEISTKETHQFDMPCQNIN--ILRAALTGNSQISTQYKHL--FVNRDAEKN-SFDH-MQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPS-LVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            P+NMEKLW GD +QLPA       N      G              GD H                     +E+ +ICMICEDKATGLHYGIITCEGCKGFFKRTVQN+R+Y CVADG CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKVKYKK+K N  +G+   E    +  +  +P   +N  IL+ ALT  S++    + L   V+   ++N + D  + +I  L+ CD+F+DIATL+N+ +LL ++ SDL  KL +IGDSIVYKLVQWT+RLPFY ELPV+VHTKLLTHKWHELLVLTTSAYQAIHG+ ++G+  TDG +A+  Q+VS NL TLQTCLTSMMG+PITMDQLRQDVG MVEKIT V  +FR+ KL+MEEYVCLKVI M+  S+    S L  I  RY+ CL+ Y     P +P+R   LLVRLPEV+ AA+LLL+SKMFYVPFLLNS+I
Sbjct:  463 PLNMEKLWAGDLSQLPASQQIQALNLSSYGAGPPSSCWPVPYIKANGDAHAAGHALNPGPVVQKIHEETEEDEQPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGICEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKNTRNGQLKLEGKPNKGPEPTIPAHLVNGTILKTALTNPSEVVHLRQRLDNTVSSSRDRNLTLDATLSMIQGLVDCDEFQDIATLQNLDDLL-EHKSDLSDKLMKIGDSIVYKLVQWTKRLPFYLELPVEVHTKLLTHKWHELLVLTTSAYQAIHGAHKLGSTSTDGTEADFTQQVSNNLCTLQTCLTSMMGRPITMDQLRQDVGLMVEKITHVTLMFRRIKLRMEEYVCLKVIIMLNPSNRAGTSELESILERYMSCLKTYVENTAPQQPNRFHDLLVRLPEVQSAASLLLDSKMFYVPFLLNSTI 942

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|1101367758|ref|XP_018915168.1| (PREDICTED: hormone receptor 4 isoform X1 [Bemisia tabaci])

HSP 1 Score: 519.235 bits (1336), Expect = 8.641e-171
Identity = 279/481 (58.00%), Postives = 339/481 (70.48%), Query Frame = 0

Query:  155 PINMEKLWDGDRTQLPA-------NAKKLTEGTTQE----------GDDHI--------------------EEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNK-NKSSGKTGGEISTKETHQFDMPCQNIN--ILRAALTGNSQISTQYKHL--FVNRDAEKN-SFDH-MQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPS-LVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            P+NMEKLW GD +QLPA       N      G              GD H                     +E+ +ICMICEDKATGLHYGIITCEGCKGFFKRTVQN+R+Y CVADG CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKVKYKK+K N  +G+   E    +  +  +P   +N  IL+ ALT  S++    + L   V+   ++N + D  + +I  L+ CD+F+DIATL+N+ +LL ++ SDL  KL +IGDSIVYKLVQWT+RLPFY ELPV+VHTKLLTHKWHELLVLTTSAYQAIHG+ ++G+  TDG +A+  Q+VS NL TLQTCLTSMMG+PITMDQLRQDVG MVEKIT V  +FR+ KL+MEEYVCLKVI M+  S+    S L  I  RY+ CL+ Y     P +P+R   LLVRLPEV+ AA+LLL+SKMFYVPFLLNS+I
Sbjct:  469 PLNMEKLWAGDLSQLPASQQIQALNLSSYGAGPPSSCWPVPYIKANGDAHAAGHALNPGPVVQKIHEETEEDEQPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGICEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKNTRNGQLKLEGKPNKGPEPTIPAHLVNGTILKTALTNPSEVVHLRQRLDNTVSSSRDRNLTLDATLSMIQGLVDCDEFQDIATLQNLDDLL-EHKSDLSDKLMKIGDSIVYKLVQWTKRLPFYLELPVEVHTKLLTHKWHELLVLTTSAYQAIHGAHKLGSTSTDGTEADFTQQVSNNLCTLQTCLTSMMGRPITMDQLRQDVGLMVEKITHVTLMFRRIKLRMEEYVCLKVIIMLNPSNRAGTSELESILERYMSCLKTYVENTAPQQPNRFHDLLVRLPEVQSAASLLLDSKMFYVPFLLNSTI 948

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|641663899|ref|XP_008182814.1| (PREDICTED: hormone receptor 4 isoform X2 [Acyrthosiphon pisum])

HSP 1 Score: 515.768 bits (1327), Expect = 1.660e-169
Identity = 273/491 (55.60%), Postives = 333/491 (67.82%), Query Frame = 0

Query:  154 IPINMEKLWDGDRTQLPANAK------KLTEGTT-------QEGDDH--------------IEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEIST---------------KETHQFDMPCQ-NINILRAALTGNSQISTQYKHL----FVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHG------STRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMV-ENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            +P+NME+LW GD +QLP  A        LT  T          GD+                +E+ ++CMIC+D+ATGLHYGIITCEGCKGFFKRTVQN+RIY C+A+G CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKVKYKK +   +G+   E S                ++ +   M    N  IL+ ALT  S++    + L      +RD   +    + +I NL+ CD+F+DIATL+N+ +LL  N SDL  KL QIGDSIVYKLVQWT+RLPFY ELPV+VHT+LLTHKWHELLVLTTSAYQAIHG      ST M   R   E +E HQEV  NL  LQ CL+SMMGKPITMDQLRQDVG MVEKIT V  +FR+ KL+MEEYVCLKVI M+ +N+ +T+  L  I  RY  CL+ Y     P++P+R+  LL RLPE++ AA+LLLESKMFYVPFLLNS+I
Sbjct:  457 VPLNMERLWAGDLSQLPVAATHQMHALNLTANTGPGWPMAGSNGDNKSAPVNAYHQMEEAEEQEQPMVCMICDDRATGLHYGIITCEGCKGFFKRTVQNRRIYTCIAEGTCEITKAQRNRCQYCRFKKCIGQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKKRPPKNGQVKMEKSVTCTTASTMTTIKTENQDNNSSSMSTLVNGTILKTALTNPSEVVYLRQRLDNAVSSSRDRTFSIEATVNMIKNLMDCDEFQDIATLRNMEDLLEHN-SDLSAKLMQIGDSIVYKLVQWTKRLPFYLELPVEVHTRLLTHKWHELLVLTTSAYQAIHGPQKIWNSTNMNGDR--NEDSEFHQEVFQNLCILQNCLSSMMGKPITMDQLRQDVGVMVEKITHVTLMFRRLKLRMEEYVCLKVIIMLTQNNGNTTSELETIQERYTSCLKTYVEHTFPMQPNRLQDLLQRLPEIQSAASLLLESKMFYVPFLLNSTI 944

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|321456767|gb|EFX67867.1| (hypothetical protein DAPPUDRAFT_203579 [Daphnia pulex])

HSP 1 Score: 508.449 bits (1308), Expect = 1.892e-169
Identity = 261/421 (62.00%), Postives = 312/421 (74.11%), Query Frame = 0

Query:  182 QEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKY---KKNKNKS----SGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHL----FVNRDAEKNSFD-HMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            QE D   E+  +ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKR+Y CVA+G+CEI KAQRNRCQYCRFQKCL +GMVLAAVREDRMPGGRNSGAVYN+YKVKY   KKN NKS    +  T G ++ ++  Q      N NIL+ ALT  S++    + L      +RDA    ++  M  I  LI CD+FEDIATLK + ELL+   ++L  KLCQIGDSIVYKLVQWT+RLPFY ELPV+VHT+LLTHKWHELLVLTTSAYQAIHG  +  +     E  +  Q+VS NLVTLQTCL +MMG+P+T+DQLRQDVG MVE+IT V  + ++ +L+MEEYVCLKVIAM+   +     L  I  RY++CL++Y   ++P  P R   LL RLPEV+ AA LLLESKMFYVPFLLNS+I
Sbjct:  316 QEDD---EDTPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRVYTCVAEGNCEITKAQRNRCQYCRFQKCLAQGMVLAAVREDRMPGGRNSGAVYNLYKVKYRKHKKNNNKSPPGTTANTNGGVTAQQQQQVPR-IANGNILKTALTNPSEVLHLRRRLESAVTSSRDAISMPYETAMPTICTLIYCDEFEDIATLK-LDELLD-TKAELSDKLCQIGDSIVYKLVQWTKRLPFYSELPVEVHTRLLTHKWHELLVLTTSAYQAIHGPRKTWSGPEPTEH-DFVQQVSANLVTLQTCLAAMMGRPLTLDQLRQDVGLMVERITHVTMMLQRSQLRMEEYVCLKVIAMLSQRNV---ELEAIQERYMQCLQSYVEHNYPQSPGRFSDLLTRLPEVQSAATLLLESKMFYVPFLLNSAI 726

The following BLAST results are available for this feature:

BLAST of orphan nuclear receptor vs. L. salmonis genes
BLAST of orphan nuclear receptor vs. SwissProt
BLAST of orphan nuclear receptor vs. nr

BLAST of orphan nuclear receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000011907	1.146e-11	34.45	supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1...	[more]
EMLSAG00000004174	1.057e-10	40.23	supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-...	[more]
EMLSAG00000003771	1.249e-10	47.37	supercontig:LSalAtl2s:LSalAtl2s2039:3647:12796:1 g...	[more]
EMLSAG00000011488	5.153e-9	24.35	supercontig:LSalAtl2s:LSalAtl2s794:281844:292908:-...	[more]
EMLSAG00000007233	1.338e-8	50.91	supercontig:LSalAtl2s:LSalAtl2s405:178614:197434:1...	[more]

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BLAST of orphan nuclear receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1710719\|sp\|P51128.1\|RXRA_XENLA	4.011e-41	28.50	RecName: Full=Retinoic acid receptor RXR-alpha; Al...	[more]
gi\|74902124\|sp\|Q5I7G2.1\|RXR_LYMST	5.909e-41	28.89	RecName: Full=Retinoic acid receptor RXR; AltName:...	[more]
gi\|464702\|sp\|Q05343.1\|RXRA_RAT	7.186e-41	28.75	RecName: Full=Retinoic acid receptor RXR-alpha; Al...	[more]
gi\|133701\|sp\|P19793.1\|RXRA_HUMAN	8.434e-41	28.75	RecName: Full=Retinoic acid receptor RXR-alpha; Al...	[more]
gi\|75017953\|sp\|Q8T5C6.1\|RXR_BIOGL	8.886e-41	28.89	RecName: Full=Retinoic acid receptor RXR; AltName:...	[more]
gi\|133702\|sp\|P28700.1\|RXRA_MOUSE	8.936e-41	28.75	RecName: Full=Retinoic acid receptor RXR-alpha; Al...	[more]
gi\|1710810\|sp\|P51129.1\|RXRG_XENLA	4.147e-40	27.48	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|52783417\|sp\|Q90415.1\|RXRAB_DANRE	5.274e-40	29.77	RecName: Full=Retinoic acid receptor RXR-alpha-B; ...	[more]
gi\|147732610\|sp\|A2T929.2\|RXRAA_DANRE	6.658e-40	27.99	RecName: Full=Retinoic acid receptor RXR-alpha-A; ...	[more]
gi\|133700\|sp\|P28701.1\|RXRG_CHICK	1.190e-39	28.50	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]

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BLAST of orphan nuclear receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|985401230\|ref\|XP_015368325.1\|	1.358e-172	55.58	PREDICTED: hormone receptor 4-like isoform X2 [Diu...	[more]
gi\|1101367760\|ref\|XP_018915169.1\|	3.801e-171	58.00	PREDICTED: hormone receptor 4 isoform X2 [Bemisia ...	[more]
gi\|1101367758\|ref\|XP_018915168.1\|	8.641e-171	58.00	PREDICTED: hormone receptor 4 isoform X1 [Bemisia ...	[more]
gi\|641663899\|ref\|XP_008182814.1\|	1.660e-169	55.60	PREDICTED: hormone receptor 4 isoform X2 [Acyrthos...	[more]
gi\|321456767\|gb\|EFX67867.1\|	1.892e-169	62.00	hypothetical protein DAPPUDRAFT_203579 [Daphnia pu...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold491_size156641	supercontig	scaffold491_size156641:8337..11777 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	F:binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold491_size156641-snap-gene-0.24-mRNA-1	maker-scaffold491_size156641-snap-gene-0.24-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold491_size156641:8337..11777+

gene from alignment at scaffold491_size156641:8337..11777+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold491_size156641-snap-gene-0.24 ID=maker-scaffold491_size156641-snap-gene-0.24|Name=orphan nuclear receptor|organism=Tigriopus kingsejongensis|type=gene|length=3441bp|location=Sequence derived from alignment at scaffold491_size156641:8337..11777+ (Tigriopus kingsejongensis)
GTGACACGAACGAAGGGACGTATGATGCCGACCTGCAGCATAATTCCGTG
AGCAACAGTCTGAGCGTGAGTTCCTCGTTCATGGGCGTGTCGCCCATGTC
CGAGAAACCGCCGTCCATCCACGAAAGCAGTCTCATAACCAAAGACCATC
ATCACCACCACCACCATCATCGGAACACCTTGAAATGGGCCAAGAACTGC
AATCTGGCCGTGTCCACATCACTCCCAACCTCGGTCCCTGCGCCAGAATC
TCCTCCCAAGTACATGGTTTCCCCACTCTATCCCAACTCCATGGTGGTTA
GACAGGACGAACATCACTATGAGGAGCACCATAGGCTCTCCGAGCAGGCC
CAGAAGATCTCTTCGGCTGTGGATGGAATGCTTAGTTTGCAGTCCGCGAA
TACCGTCGCCCGCGTCTCGTCCTCGGGGTCGTCGATGGAAAAAGTATTCC
CCGTGTGTCCCAGATCCGAGGGCTCGTCCTACACCCGGGGCATTCCCATC
AACATGGAAAAGCTATGGGACGGAGATCGGACCCAACTCCCAGCCAACGC
CAAGAAACTGACTGAGGTAACAATCCCGGGCCATGGCCCTCTCGAGACCC
GTGGGCTGTGATGGCCCAGTCTGATCTGTGTATAAACCGTGGATCTTTTT
GTGAATACAGGGAACAACGCAGGAGGGTGACGACCATATTGAGGAGGAAT
CACTGATATGCATGATTTGCGAAGACAAAGCGACTGGTCTTCATTATGGA
ATCATAACGTGTGAAGGGTGAGTGGATTTGTATGCGGGCTATTTCTGCCA
TTTACTCCATCGGGTGCCCAACCCCCTAAGTTAGCTTGTCCATGAAGTAA
GGAGCGAAAACGAATTGATCCCATAGTGAGTTGAAAAGTTGGGGTCTGAC
TGAAATTAATGGAGGGAATCGACCGGAATGAATCTTAGCTAGAGTGTCCT
TGGGGTTGATATCTCTCTTTTTTGGCCCGGCTGATCTGAGCTGGCCGATA
GCAGTCCTATGTGCCAAGTGAACTGATTTGTGTTATTTTTCTTTCATGCT
TAAAGATGCAAGGGATTTTTCAAGAGAACTGTCCAGAACAAACGCATCTA
TAATTGTGTGGCCGATGGGCATTGTGAAATCAACAAAGCGCAAAGGAATC
GATGCCAATATTGTCGGTTTCAAAAGTGTCTTCATAAGGGAATGGTTCTT
GCAGGTAATTGCCTATCTCACTGGCAACCCAATGTCGGCCCAATCAATGC
TGGTTCCATTTCTAGCTGTTCGTGAAGACCGAATGCCTGGTGGTCGAAAT
TCGGGGGCTGTCTACAACATGTATAAGGTGAGTGTACGAAAGCCGGTCGG
TCACCTTATGCCCCCCCCCCTGCAGGCCATAATGTGGGTGATTCCATTCC
AGGTCAAGTACAAAAAGAATAAGAACAAATCATCCGGGAAGACAGGGGGC
GAGATTTCCACCAAGGAGACGCATCAGTTTGACATGCCCTGTCAAAATAT
AAACATACTTCGAGCTGCGTTAACTGGAAACTCTCAGGTAACGATTCCTA
GCGTCAGGAGGATTGAATGGTTTGCACACCAAGTGTCTGCACCATGCTCC
GGTTTTGAGATTGGGCTAGCTTTTGATCACGTCGCTTTTCTCTGCAGATT
TCCACACAATATAAACACTTATTTGTCAATCGAGATGCCGAAAAGAATTC
CTTTGATCACATGCAACTGATCAATAATCTCATTGTTTGCGATGACTTTG
AAGACATTGCCACTTTGAAGGTGAGTGTGAATGGCAGCCCAAGTGTTCAT
TGGAACACAGATGTGAAAGCGATGGATCTCCACGAGGGATTAGAGATGGT
TTCGTCATGGGTTCGGTTCCTTTCTAGAACATCGGCGAACTTCTCAATCA
AAACACATCTGACTTGCAACAGAAACTTTGTCAAATTGGAGATTCAATTG
TGTACAAACTAGTACAGTGGACCAGGCGGCTGCCATTCTATCACGAGCTT
CCGGTGGACGTGCACACAAAATTGCTAACTCACAAATGGCATGAACTACT
GGTTCTGACCACGTCCGCGTATCAAGCAATACACGGGTCCACACGAATGG
GCACAATTAGAACGGACGGGGAAAAGGCCGAGTTGCACCAGGAGGTAAGC
CCTACGATTCTTCTTGTAGACCAGAATGGAGTGTTATCCCAGTTCCATGT
TGTTTTATTTCACTCACGCTACCTTTCCATTGCTACCTCAGGTGTCGACG
AATCTCGTGACTCTGCAAACCTGTCTGACGTCAATGATGGGCAAGCCAAT
CACCATGGATCAACTGAGACAAGATGTCGGGAACATGGTGGAAAAAATCA
CCCGAGTCATAGCCCTTTTCCGACAATGCAAGCTGAAAATGGAAGAATAT
GTTTGTCTCAAAGTCATCGCAATGGTTGAAAATTCCGGTACGACCCCCCC
TCCCCCTAGTCGCCATCACGATATCAAGTCTCACGCCCGTTTCTTCCCTC
ACTTTACAGACAGTACTTCACCGTCCTTGGTGCCAATTTACAATAGATAC
CTTAAGTGCCTCCGAGCCTATGCAACACAACACCATCCACTGGAGCCTGA
TCGAGTGGACAAACTACTAGTCCGATTGCCTGAGGTACGTGTCCGGGGCC
AGGGGGAGTAGTACGCAGGCATCATGATCTGACGGTTTCCATCGATTCTC
TTGCAGGTTCGTGTGGCAGCCGCATTACTTTTAGAAAGTAAAATGTTTTA
TGTGCCATTCTTACTTAATTCGTCCATTGTTGGTTCTTAGAGAGCAATCT
GCGAGGGTGGGATTGGCTCGTCTGGGGACGACTTATTTATTGCTCTCAAC
ATGTTAGTAGGTTTATAAGGTTTGCCAGTGTTTTTTACATTTTTGTATGT
TGTTAATAATAAATTTCACTTCGCATCCTGCGGGAGACATTTTGAATGAG
CCCTGTGTTGGTGCCTTTGTTTCATCTGTCTCACCCGCCGGCCTCGTCGT
GGGTGAGTCGATGCAGTTGGAGCTTCGCCTCCTCGATGACTTCGGGGGGA
AACTTGGCCAACTCCGCGACCTCCACGCCGAAACTTTGGGTAGCTCGGCC
CGCCACAATCTGGTAGAGGAGGGTGAAGCTACCATCTTGCACGGCCGCGG
CGCAGTTCATGTTGAAACAAGTCGGATGGCTCTGGTCGATGTCCGACAGC
TCGTGAAAGTGGGTGGCGAACAAGGTCACGGCCCGGATCTGGCTCACGAT
GTGCTCGCAAATGGCCCAAGCCAGCCCGAAGCCGTCTTGAGTCGAGGTGC
CCCGACCCAGTTCGTCGATGAGCACGAGGCTCTTCTCGGTCGAGTGGTTG
AGGATGGCCTTGATGTCGAGCATCTCCTTGAGGAAGGTGGACGAGCCGTC
CACGAGCGAGTCGTCGGCCCCAATCCGGACCGAAATGGCGT

Synonyms

The feature 'orphan nuclear receptor' has the following synonyms


Synonym
Tk05482

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