pyroglutamylated rfamide peptide receptor, maker-scaffold499_size154954-snap-gene-0.18 (gene) Tigriopus kingsejongensis

Overview
Namepyroglutamylated rfamide peptide receptor
Unique Namemaker-scaffold499_size154954-snap-gene-0.18
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of pyroglutamylated rfamide peptide receptor vs. L. salmonis genes
Match: EMLSAG00000011030 (supercontig:LSalAtl2s:LSalAtl2s743:229570:322372:-1 gene:EMLSAG00000011030 transcript:EMLSAT00000011030 description:"maker-LSalAtl2s743-augustus-gene-2.17")

HSP 1 Score: 74.7146 bits (182), Expect = 1.404e-15
Identity = 62/206 (30.10%), Postives = 102/206 (49.51%), Query Frame = 0 
Query:   53 IILSVLSNLALCTAIVLDRRKH---------KIVYFMLIFFFIINVIDYSVLFFEFS-LGMDHIFPYSESLCTLYQVTLRSYPILQAWAIVILLHYTCNVYLMPEVMSPTSAGHHQRSNHTTVVQCNSRTSNFSLMGSILLGLFLATCLFSIPTAYFAKVVVFEGDLSYCEIDPTALASPEGNVHKAVSFYYLIYQALLSYWLPLL 248
            +++S + N+   +++V  +R+            VY +   FFI+N++  ++L FEF+ LG++H+FPY  S C LYQ  L+  PI+Q  ++V+L+ Y      +P                  ++  + RT    + G+  LG+     L SIPT +F+ +  +     YCE+    L S       A S Y+L+Y A  SYWLPLL
Sbjct:    1 MVISFIGNILFLSSLVFRKRQRANIPSSVPISSVYKLHGLFFILNLMSDALLLFEFTQLGVEHVFPYGVSSCLLYQNALKLVPIVQG-SLVVLVAY------LP------------------IMNRSWRT----IRGAFELGV----VLLSIPTTFFSTLHTYSDGKKYCEV---LLGSSS-----ATSAYHLLYLAFFSYWLPLL 165
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BLAST of pyroglutamylated rfamide peptide receptor vs. nr
Match: gi|1325272646|ref|XP_023320952.1| (uncharacterized protein LOC111695758 [Eurytemora affinis])

HSP 1 Score: 144.05 bits (362), Expect = 1.278e-35
Identity = 100/320 (31.25%), Postives = 166/320 (51.88%), Query Frame = 0 
Query:   35 EDTSKVGGSVWIFLFGFVIILSVLSNLALCTAIVLDRRKHKIVYFMLIFFFIINVIDYSVLFFEFSLGMDHIFPYSESLCTLYQVTLRSYPILQAWAIVILLHYTCNVYLMPEVMSPTSAGHHQRSNHTTVVQCNSRTSNFSLMGSILLGLFLATCLFSIPTAYFAKVVVFEGDLSYCEIDPTALASPEG-NVHKAVS-FYYLIYQALLSYWLPLLVSIPFMHRLAYSKHG--DKFLEVTIVSWTAISFFVFYLLHGCVVLIRHSLDVSNYDLSSYHGWMIKVLQSLFWLLAFTSHVFRPALVILLDPDLKESVLHPLCG 350
            +D       +W+ LF  + ILS LSN++L  A++ + RK   V+ ++   F++N++DY++L  EFS G+   FP+ E  C +YQ  L+S P+  +  +V+L+++           S  + G          V  N       ++              S+PT  ++   V+     +C +D   +A   G  V ++V+  YYLIY+++L Y+LPL V    ++ L    +G  DK   V++      S+FVFY  +  +  IRHS+DVS++D+++   W++ VLQSLF LLA   HVFRP L  +LD DL++  +  L G
Sbjct:   34 KDERNSSNLIWVVLFSMLFILSFLSNISLILAVLSNSRKRTGVHLIICLLFLVNLVDYALLILEFSTGVSSHFPWGEESCAVYQYFLQSNPLYYSALLVLLVYHA----------SKPAGG-------LNTVWWNLVLLVILVLLV------------SLPTILYSDTAVYPSGARFCVMDLGGVAGWAGLGVTQSVTALYYLIYRSVLPYFLPLCVLARPLYVLYQRINGPEDKNCTVSLSLAVVFSYFVFYSCYSAICFIRHSIDVSSFDVTTRTSWILAVLQSLFSLLATFQHVFRPLLCFVLDIDLRKDFVVRLSG 324
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BLAST of pyroglutamylated rfamide peptide receptor vs. nr
Match: gi|1325315649|ref|XP_023339525.1| (uncharacterized protein LOC111709840 [Eurytemora affinis])

HSP 1 Score: 75.8702 bits (185), Expect = 1.181e-11
Identity = 35/107 (32.71%), Postives = 63/107 (58.88%), Query Frame = 0 
Query:   35 EDTSKVGGSVWIFLFGFVIILSVLSNLALCTAIVLDRRKHKIVYFMLIFFFIINVIDYSVLFFEFSLGMDHIFPYSESLCTLYQVTLRSYPILQAWAIVILLHYTCN 141
            +D       +W+ LF  + ILS LSN++L  A++ + RK   V+ ++   F++N++DY +L  EFS G+   FP+ E  C +YQ  L+S P+  +  +V+L+++   
Sbjct:   34 KDERNSSNLIWVVLFSMLFILSFLSNISLILAVLSNSRKRTGVHLIICLLFLVNLVDYGLLILEFSTGVSSHFPWGEESCAVYQYFLQSNPLYYSALLVLLVYHASK 140
The following BLAST results are available for this feature:
BLAST of pyroglutamylated rfamide peptide receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000110301.404e-1530.10supercontig:LSalAtl2s:LSalAtl2s743:229570:322372:-... [more]
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BLAST of pyroglutamylated rfamide peptide receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of pyroglutamylated rfamide peptide receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 2
Match NameE-valueIdentityDescription
gi|1325272646|ref|XP_023320952.1|1.278e-3531.25uncharacterized protein LOC111695758 [Eurytemora a... [more]
gi|1325315649|ref|XP_023339525.1|1.181e-1132.71uncharacterized protein LOC111709840 [Eurytemora a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold499_size154954supercontigscaffold499_size154954:107775..110630 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold499_size154954-snap-gene-0.18-mRNA-1maker-scaffold499_size154954-snap-gene-0.18-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold499_size154954:107775..110630-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold499_size154954-snap-gene-0.18 ID=maker-scaffold499_size154954-snap-gene-0.18|Name=pyroglutamylated rfamide peptide receptor|organism=Tigriopus kingsejongensis|type=gene|length=2856bp|location=Sequence derived from alignment at scaffold499_size154954:107775..110630- (Tigriopus kingsejongensis)
CCGAACCCAGTCAGAAGGGTTGAATTGTGTGCCGATAGAATTCGAGACTG
TCTGAAGAATCGAGGCGAGTGAGTAGTGCACCTCGCTGCTGTTGTTGTTC
CAAGCTGTTCCCCGAAGTGGAACAACGAGCGCCAGGCAAACAAGAGCCCA
TAGATCATGGAGTTGAGTCGAGGCGTTCTCCCGTGATACACACCTCCTAG
ACGAAAATTTTGAATCGCCCCACGGAACTTAGCCAATTATCAGTCCCATC
CCTCCTCTCCTCTTCGCCATGATTCCGAGTGGGCTCGATCAGCCGGAGGT
GACTCCTGGTCCTATGACCACCACAGCCCTGCCTGCCTTGATCCTGTCCT
CGGAGGATTCTCCTGCCATGGAGGACACCTCCAAGGTGGGTGGCTCGGTC
TGGATCTTTCTCTTTGGCTTTGTCATCATCCTCTCCGTTTTGTCCAATCT
TGCCCTCTGCACTGCCATCGTCTTGGACCGGAGGAAGCACAAGATTGTCT
ACTTCATGCTGATCTTCTTCTTCATCATCAACGTCATTGACTACTCTGTG
CTCTTCTTCGAGTTCAGCCTTGGGATGGACCACATATTCCCCTACAGCGA
GTCCCTCTGCACTCTCTACCAGGTCACCCTCAGGAGCTACCCTATCCTTC
AGGCTTGGGCCATTGTCATCCTTCTCCACTATACTTGTAATGTGTACCTC
ATGCCCGAGGTCATGAGTCCAACCTCGGCAGGACACCACCAAAGATCCAA
CCACACGACTGTCGTGCAATGCAACTCAAGGACGAGCAACTTCAGTCTCA
TGGGCTCCATCCTCCTCGGATTGTTCTTGGCCACATGTCTCTTCTCCATC
CCAACTGCCTATTTTGCCAAAGTGGTGGTTTTTGAAGGCGACCTTAGTTA
TTGCGAAATTGATCCCACAGCCTTGGCCTCCCCAGAAGGAAACGTCCACA
AGGCCGTGTCCTTCTACTATCTCATCTACCAAGCACTTCTCAGCTATTGG
CTCCCCCTCCTGGTTAGTATCCATATTATTGCGATTTCGTGTCTGACTCC
CATTCACAATATTGGCAAGGACAATCATCATGAGCTATCATGTGTTCTCA
GCAAATTCAGCTGATGTCTCCTTGGAAGATCACCCCCCCCTTCGCCCAGC
CCATATCAGCCTTGTAACAATGGCAGTAGTTCGACTGAAAATTTGCACAA
CTCCCTCCCCAATGTCGTTTCCCACCCGGCACGACGTCTGACGATGTGCA
AAAAACACTCGCGACGAGGATAGGCTAAAAAACTGGACACGCAAGTCTCC
TTCGCTGTAAATTCAAGCTGAAATGCTGGTGACAACCGTCGGGACAATTC
CAGTCTCATTGCATCTATTAGGGCAAAAAATAATTGTACCTTTGGCGATA
TGCGCAACTTGGCCAGATATAAAAGACTTCCTCCACACAAGTGTGTTTGA
GTGTGACAAATCACACGACCGGTATTTGGGCCATCCCAGACAGACCGACA
GCAAAGGATGCATTTGCGTAGCCTTCACATGAGTCAATGCAAAATGTTGT
TCCCAATCCAAGGGACGTTGGATTTTCTTCCAATTTATCCCACCACTCAA
GACAGGATATGCCATCCTAGATTGGGAGCTGTATATTTTCCTCCACGGCA
CATTGTGTAACGGTTCAAGCTTGAATTACGCCTACACTCGTTAGTAAAGC
AGGCAAACTCATGTGCTGACATGAACCGTAAAACAAATTTGGGCCACTCA
CCCCAGTGGAGGGTTCAAGGGAGGAAGGAAGGGTTGGGGGAGAATTATGA
GCCTTGTGTCAGTTTTGACAGAGGTTGAGTGGAGCTGAAGCGGTCTGGAG
CACCACTTAAAAGTCCAGATTCGAGAGAGACACTTTGACAAAATTGATTT
CTTGAACCACTAATTGAGTGAGATTTTGCACTCACAGCTAATGGGGTGGG
GGAATGAATTTACTTGCTGGGTGTGCAACTTGGCAAAGTGTCGAATCATC
GGGAAACTGGAAATCTGATCCCTTTCAGTGAGGTCCAAATGAGGTCAGAC
TCAATAAATCCCGCATTGCTTACTCGACAACAATCTCTGCGCATGCATGA
ATTACCCGCCCGAGTCGCAGATTCCCCCAATGCCAATTGACCAATGTGTG
TGCCTTTCCATTTTCAGGTGTCCATCCCATTCATGCATCGTCTGGCCTAC
TCCAAACACGGGGACAAGTTCCTCGAAGTGACCATCGTGTCCTGGACGGC
CATTTCCTTCTTCGTCTTCTATCTCCTGCATGGCTGTGTCGTTCTGATCA
GACATTCCCTGGATGTCTCCAACTACGATCTCTCCTCTTACCACGGCTGG
ATGATCAAGGTGGGTCTTTAAATTGCCCATTTGGCGGGAGTGACTCGGAG
AGTTTTCGGGGAGGACATAAAACCGAGTCTGGCTCATTTTGGAGCCATAA
CTCCGGCGGCTCCAATTTCACCCTCCGGCGGCTCATGGTGCAATGTGTTA
TTTTTCAGGTCCTCCAATCCCTCTTCTGGCTCCTGGCCTTCACGTCGCAC
GTCTTCCGACCCGCCCTGGTCATCCTGCTTGACCCCGATCTCAAGGAAAG
CGTGCTCCATCCCTTGTGCGGCTGCTGCGGCGAGTCACGGCCATCTCCTT
CGCCACCCTCCTTCATATCTTCTCTCTTGACCCTCTTCCGGGAGGGGCAG
GATCAGCACAGCCACAACCCAGATCTCGAGAACCGACTACTCAAGAAGGT
AGCCGCGCCCATCTTCAGGCCGGCTCACGCCCCCACAGAGGAGAGAGAGG
AAAACACCCATCTGTTCCACATGCCCGAGGACGACAACTCGGCCGCCCTC
TGCTGA
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Synonyms
The feature 'pyroglutamylated rfamide peptide receptor' has the following synonyms
Synonym
Tk03757
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