hypothetical protein, maker-scaffold508_size152036-snap-gene-0.21 (gene) Tigriopus kingsejongensis
|
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of hypothetical protein vs. L. salmonis genes
Match: EMLSAG00000010510 (supercontig:LSalAtl2s:LSalAtl2s698:187550:225775:1 gene:EMLSAG00000010510 transcript:EMLSAT00000010510 description:"maker-LSalAtl2s698-augustus-gene-1.11") HSP 1 Score: 299.671 bits (766), Expect = 2.141e-91 Identity = 267/765 (34.90%), Postives = 373/765 (48.76%), Query Frame = 0
Query: 6 PGSPYRTSSGSLNGLASKPSLNKELMQKLRSMTETIKMLSQENSSLRSENEEIRDDMLMENTPVAEELDANVDGFIPDDYDGLNQPQMISLILSYDEKVKALTAEVTELAKCRDE--------VHTKGAEKDKYKALARRLKEERNQYKESLDEKLNEQSELKDDMEKMSELIGELRDNCQKLQDELLLCRSHSQGRELSADQC---HVSTQVRLPDIKPRASSLSNIRKTSANSVESVRKAKAVYGPPGKASNNVTKPRSSVSNSTSSSIVSLRDETARQKLNNLRSPQTRKPLRSPLPVNS-PSKGGGGPRIAKPVVKPSPLP-ASSPSQKPLSYRSSSPLSAPKASKPSPIHGSSPARTSRIPQPSPSRLPSASRYQSPAFKKQESPRRLLVDTPSPPPPPPPSQLPEDERITPTPPQTPV---QPEPYPERVELFDDEDDLDCSVLRVESDGKIQ------MEIK--DRPSVVRSPVVPQQQSKGDPLGPDGSSSGES----------NADENDEPSADDEGDHTDEDPKSNADGTMDTPRTSRR-RSEGGTLAARRVQRTWKHFYEELEERREQNPDLSLSKLAETTLSSNPSPNPDSMKSLITSSSPRDLDRKYSLPSNINEALLRSNEDLDESIDSIQAALQGHQNRSKSMSML-RQGLK--IHIARPWLKKKTPLVEE--------SSEEETDKVCGSIQSVIRAHDRRQKILQRLEADKDMFVSGKVDALKAKFNERRAKTAADRSDGVTDDDEDV 724
PGSPYR+SSGSLNGL S+PSLNKEL+QKLRSMTETIK+LS EN ++ EN+ +R N+ ++ +++ ++YD L++ Q+I+L +SYD+K K + E+ ++ + E + +EKDKYK+LARRLKEERN YK +L EK NEQS LKD+MEKMS+LI ELR+NC KLQ ELL R S S H T S ++R+ A SV SV + + V NN +K +S SN ++ R++TA + T +NS P GP+ AKPV KP P +S + PL + + S+P SK + G + P+PS++P K SP + ++ + P +Q+ T V +P R + DE D + +L V D +Q M+ K ++ + PV S D ++D +PSADDEG S + TP+T ++ + +L ARRV RTW+HFYEELEER P+ +L L P ++K +RKYSLP E+ +R EDL+ I S Q H+ ++ ML R LK IH ARPWLK K +E SSEE+T+ + K RL+ADKD+F +GKV A+KA+FNERR DRSDG+TDDDE++
Sbjct: 19 PGSPYRSSSGSLNGLTSRPSLNKELVQKLRSMTETIKILSDENIVVKEENQRLR-----RNSSLSRDMEQ------LENYDELSKSQLIALTVSYDKKFKDMADELEKVKEVSTEQQMNKNNMSNATKSEKDKYKSLARRLKEERNNYKCALQEKQNEQSVLKDEMEKMSDLISELRENCHKLQSELLQVRRRSASERFSDASVQTDHRRTSSARRSSIGSGGSSESVRR--ARSVYSVNRNQQVI-------NNTSK-NTSASNPKPRPSMNFRNQTATSAXKTVAKNNTTPNNHHHRHINSQPGTPKSGPKFAKPVTKPXASPRINSGADSPLKKTTMTSFSSP--SKIPIVRGIPRSHVGSSKIPTPSKIPGP---------KSLSPSIVSINNKNASPQQGGTQVSSSSSSGVAKTTTYVKDEEPGVVAARPAIISDEIDEEEDILIVNKDETLQEYSITLMKNKQNEKAESLTLPVSSSSSSSYSSKADDDDDDEVEGEEFDDDFHRHSDSAKDPSADDEGSRDS----SVINSVPCTPKTKKKIENLKQSLTARRVHRTWQHFYEELEERNLSXPNHALG------LKQXQQXQPLTLK------LDEKCNRKYSLPV---ESTMRGFEDLNPQILSEQL----HEEXAEEALMLSRNTLKNRIHTARPWLKNKAKSAKELLCPREDGSSEEDTNP----------SFSNSNKAFLRLQADKDLFTAGKVSAIKAQFNERRR--LPDRSDGITDDDEEL 716
BLAST of hypothetical protein vs. nr
Match: gi|1325335046|ref|XP_023349343.1| (myosin-2 heavy chain-like isoform X2 [Eurytemora affinis]) HSP 1 Score: 162.155 bits (409), Expect = 5.339e-38 Identity = 144/384 (37.50%), Postives = 203/384 (52.86%), Query Frame = 0
Query: 14 SGSLNGLASKPSLNKELMQKLRSMTETIKMLSQENSSLRSENEEIRDDMLMENTPVAEELDANVDGFIPDDYDGLNQPQMISLILSYDEKVKALTAEVTEL------AKCRDEVHTKGAEKDKYKALARRLKEERNQYKESLDEKLNEQSELKDDMEKMSELIGELRDNCQKLQDELLLCRSHSQGRELSADQCHVSTQVRLPDIKPRASSLSNIRKTSANSVESVRKAKAVYGPPGKASNNVTKPRSSVSNSTSSSIVSLRDETARQKLNN---LRSPQTRKPLRSPLPVNSPSKG--GGGPRIAKPVVKPSPLPASSPSQKPLSYRSSSPLSAPKASKPSPIHGSSPARTSRIPQPSPSRLPSASRYQSPAFKKQESPRRLL 386
SGS+N L+SKPSLN+EL+ KLRSMTETIKMLS EN +LR+ENE L+ PV +D G + ++ L+ SY+ ++K ++ E+ A +D K EKDKYKALARRLKEERN YK ++EK EQ ELK ++EKM+++IGELR NC +LQDEL + + ++ P + RASS +IR +R + + RS+VS S +Q+LN L P+ R + +P P ++ ++G G GP+IAKPV + PAS S+ P SS+P S P++ + S + G SR P PSPS++P+ S+ S K ES + LL
Sbjct: 84 SGSINALSSKPSLNRELVTKLRSMTETIKMLSSENVALRTENES-----LISARPV-------------NDLMG-REEEIEHLVKSYENQLKESEQKIKEMEKELEKANDKDGSIEKTTEKDKYKALARRLKEERNTYKNIVEEKKLEQDELKVEIEKMTDIIGELRRNCGQLQDELEIVYEPGERKDKGVQTS--------PALSRRASS-GDIR---------IR-------------GHAKRSRSTVSPQCISR---------QQQLNKSIELSKPKPRGGV-NPSPGSNSTQGPSGKGPKIAKPVSRAGIKPASPGSKTPC---SSAPGSTPQSPRASRVPG------SRTPGPSPSKIPTPSKTTS-KLPKSESSQSLL 397 HSP 2 Score: 98.5969 bits (244), Expect = 1.585e-17 Identity = 73/202 (36.14%), Postives = 110/202 (54.46%), Query Frame = 0
Query: 514 TPRTSRRR-SEGGTLAARRVQRTWKHFYEELEERREQNPDLSLSKLAETTLSSNPS----PNPDSMKSLITSSSPRDLDRKYSLPSNINEALLRSNEDLDESIDSIQAALQGHQNRSKSMSMLRQG----LK----IHIARPWLKKKTPLVEESSEEETDKVCGSIQSVIRAHDRRQKILQRLEADKDMFVSGKVDALKAKF 702
TPRT+R+ S LAARR+QRTWKHFY+ELEE++ ++ + S S L L+ P PNPD + S +L + ++ ++ L E D S+ SIQAA+ G + RS+ +S LR+G +K I+ ARPW+ + ES EE D +IQ ++R+H R + + D+F GKV +++ KF
Sbjct: 534 TPRTTRKVDSFKEKLAARRIQRTWKHFYQELEEKKAEDEN-SFSSLP-ILLNPEPRPPVLPNPDLLYS--------ELQEVKNKATSEHQRLFDEEEARDSSVSSIQAAILGQELRSRGLSFLREGSFSNMKTRGGIYTARPWM-----ITSESESEEDD--IQTIQGIVRSHSFRLGTIN----EGDVFRPGKVRSIREKF 714
BLAST of hypothetical protein vs. nr
Match: gi|1325335044|ref|XP_023349342.1| (uncharacterized protein LOC111718080 isoform X1 [Eurytemora affinis]) HSP 1 Score: 162.155 bits (409), Expect = 5.640e-38 Identity = 144/384 (37.50%), Postives = 203/384 (52.86%), Query Frame = 0
Query: 14 SGSLNGLASKPSLNKELMQKLRSMTETIKMLSQENSSLRSENEEIRDDMLMENTPVAEELDANVDGFIPDDYDGLNQPQMISLILSYDEKVKALTAEVTEL------AKCRDEVHTKGAEKDKYKALARRLKEERNQYKESLDEKLNEQSELKDDMEKMSELIGELRDNCQKLQDELLLCRSHSQGRELSADQCHVSTQVRLPDIKPRASSLSNIRKTSANSVESVRKAKAVYGPPGKASNNVTKPRSSVSNSTSSSIVSLRDETARQKLNN---LRSPQTRKPLRSPLPVNSPSKG--GGGPRIAKPVVKPSPLPASSPSQKPLSYRSSSPLSAPKASKPSPIHGSSPARTSRIPQPSPSRLPSASRYQSPAFKKQESPRRLL 386
SGS+N L+SKPSLN+EL+ KLRSMTETIKMLS EN +LR+ENE L+ PV +D G + ++ L+ SY+ ++K ++ E+ A +D K EKDKYKALARRLKEERN YK ++EK EQ ELK ++EKM+++IGELR NC +LQDEL + + ++ P + RASS +IR +R + + RS+VS S +Q+LN L P+ R + +P P ++ ++G G GP+IAKPV + PAS S+ P SS+P S P++ + S + G SR P PSPS++P+ S+ S K ES + LL
Sbjct: 84 SGSINALSSKPSLNRELVTKLRSMTETIKMLSSENVALRTENES-----LISARPV-------------NDLMG-REEEIEHLVKSYENQLKESEQKIKEMEKELEKANDKDGSIEKTTEKDKYKALARRLKEERNTYKNIVEEKKLEQDELKVEIEKMTDIIGELRRNCGQLQDELEIVYEPGERKDKGVQTS--------PALSRRASS-GDIR---------IR-------------GHAKRSRSTVSPQCISR---------QQQLNKSIELSKPKPRGGV-NPSPGSNSTQGPSGKGPKIAKPVSRAGIKPASPGSKTPC---SSAPGSTPQSPRASRVPG------SRTPGPSPSKIPTPSKTTS-KLPKSESSQSLL 397 HSP 2 Score: 98.5969 bits (244), Expect = 1.624e-17 Identity = 73/204 (35.78%), Postives = 110/204 (53.92%), Query Frame = 0
Query: 514 TPRTSRRR-SEGGTLAARRVQRTWKHFYEELEERREQNPDLSLSKLAETTLSSNPS------PNPDSMKSLITSSSPRDLDRKYSLPSNINEALLRSNEDLDESIDSIQAALQGHQNRSKSMSMLRQG----LK----IHIARPWLKKKTPLVEESSEEETDKVCGSIQSVIRAHDRRQKILQRLEADKDMFVSGKVDALKAKF 702
TPRT+R+ S LAARR+QRTWKHFY+ELEE++ ++ + S S L + NP PNPD + S +L + ++ ++ L E D S+ SIQAA+ G + RS+ +S LR+G +K I+ ARPW+ + ES EE D +IQ ++R+H R + + D+F GKV +++ KF
Sbjct: 538 TPRTTRKVDSFKEKLAARRIQRTWKHFYQELEEKKAEDEN-SFSSLP---ILLNPEPRPPVLPNPDLLYS--------ELQEVKNKATSEHQRLFDEEEARDSSVSSIQAAILGQELRSRGLSFLREGSFSNMKTRGGIYTARPWM-----ITSESESEEDD--IQTIQGIVRSHSFRLGTIN----EGDVFRPGKVRSIREKF 718 The following BLAST results are available for this feature:
BLAST of hypothetical protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of hypothetical protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of hypothetical protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold508_size152036:32241..39232- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold508_size152036-snap-gene-0.21 ID=maker-scaffold508_size152036-snap-gene-0.21|Name=hypothetical protein|organism=Tigriopus kingsejongensis|type=gene|length=6992bp|location=Sequence derived from alignment at scaffold508_size152036:32241..39232- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'hypothetical protein' has the following synonyms
Add to Basket
|