conserved hypothetical protein, maker-scaffold5_size1054832-snap-gene-8.12 (gene) Tigriopus kingsejongensis

Overview
Nameconserved hypothetical protein
Unique Namemaker-scaffold5_size1054832-snap-gene-8.12
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of conserved hypothetical protein vs. L. salmonis genes
Match: EMLSAG00000009904 (supercontig:LSalAtl2s:LSalAtl2s645:223217:227522:-1 gene:EMLSAG00000009904 transcript:EMLSAT00000009904 description:"maker-LSalAtl2s645-snap-gene-2.24")

HSP 1 Score: 111.694 bits (278), Expect = 2.897e-26
Identity = 126/454 (27.75%), Postives = 222/454 (48.90%), Query Frame = 0 
Query:   33 KELEVTIQALELENSHLRTDLGLKDKILTDKDSLLTSLRNQWSQALQRWSQERDLNVNQIQEKEVALNELQDDLNSLREHVTACENELERALSFAHEFKSKLEEEESAKEKLL----LDREKIGKNLQELARKVQEMGRDKESLQQELLSQRTKNTDLEVMIGQSKDSTTKLKTDFMTERRDFQIQIADLETRQESLEDQLKQNQTLESNLHDFYQSQMETILGEKVGMLQNHVEQLEQTMIQEREDLV----------------------QALVGQYSEQKSTLEASLRAARQEADCLREQLRLSERKASHELGDFFKPLTFARSSEQRIRAAETSDSSSVESAKISKSWTRYQKNLSVGLKSLETSGPNNLRTSLRTMAQSTSLERSSTTLQHSL-DSTELGD----VLTMEEREDIVKQFISQFLRENPNAVHDKSLMEGLDSMSSQMVQK 455
            + +E  ++ L++ N  L   L   + +L +KDS +  L  Q  +    W +E ++   ++      +  L+ + + L + ++  E ELE+AL+ A +FK K+EE+E+ ++K+L     +R    + L E   +V E+ +DK SL  E+   +TK           K   + L++    ER ++  ++  L   +E+ + + + N+T E+++H+FYQ QME+IL EK+  L++++E+LE+ M +E + ++                      + LV  +  ++ +  +SL A RQEAD LR+Q+R    +  HE          + S  Q     +TS SS++ S+  S S            ++L     NNL  S   +    S  RSS  L + L  S    +    +LT  E+EDIVK +I +++ ENP A+ D SLM  L+ M   +V K
Sbjct:  684 RRMENEMKELKVSNESLILKLSRSEILLREKDSFIQRLEEQCKELGMNWEKESNILNKKLLLTRGEVTTLKAENDELEKKISVYEMELEKALALASDFKGKIEEDETHRDKMLEEFVSERTLNSQQLTEERNRVVELTKDKNSLLNEM---KTKYFLF-------KKEISDLQSQSQNERTEYDKKLKGLA--EENFKLKGEMNKT-ETHVHEFYQKQMESILAEKLQQLRSYIEELEKNMREENKKIIADIRQEQRSQVSSLKEKYTNELRKLVAGFDSERQSFRSSLDAXRQEADALRDQIR---SRPXHE----------SSSLPQNNCIDDTSHSSALPSSYSSSS------------RALLHKVQNNL-PSQEAITDVLSSSRSSPILNNGLFKSFSFHEDDLSILTDTEKEDIVKGYIQKYINENPGALSDTSLMSRLNEMLYNLVLK 1098
The following BLAST results are available for this feature:
BLAST of conserved hypothetical protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000099042.897e-2627.75supercontig:LSalAtl2s:LSalAtl2s645:223217:227522:-... [more]
back to top
BLAST of conserved hypothetical protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of conserved hypothetical protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold5_size1054832supercontigscaffold5_size1054832:786203..789705 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold5_size1054832-snap-gene-8.12-mRNA-1maker-scaffold5_size1054832-snap-gene-8.12-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold5_size1054832:786203..789705-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold5_size1054832-snap-gene-8.12 ID=maker-scaffold5_size1054832-snap-gene-8.12|Name=conserved hypothetical protein|organism=Tigriopus kingsejongensis|type=gene|length=3503bp|location=Sequence derived from alignment at scaffold5_size1054832:786203..789705- (Tigriopus kingsejongensis)
GCAGTCAATCGAGGCAGCTAGCCTTGAATTCCACGGCCACTAGCTCTCAA
AGTTCCAATACCAAAGATTGTACGGTAGTGGAGAAGAAGGAAGATATCCC
CGATATTTCTCCGCAGGTTAAGGTATTTACTTCTAAGGGTCTAATCATGA
AGCAAAATTTCTTCAATTTACATCAATGCATCAAACTTTTAGGAGCTGGA
GGTCACGATTCAGGCATTGGAGTTGGAGAACAGCCACTTGCGCACCGACT
TGGGTTTGAAAGACAAGATCCTAACCGACAAGGATTCCCTTTTGACTTCG
TTGAGGAATCAATGGTCTCAAGCTTTGCAAAGATGGTCACAGGAGAGAGA
TCTCAACGTGAACCAAATTCAAGAAAAAGAGGTTGCTCTTAATGAACTCC
AGGACGACCTCAACTCTCTTCGTGAGGTAAAATGGGCTATATTTTTGAAG
CTTCAGTACGGTGCTGGCGTATCGTGACACAATCTGTCGTGCATCGTATT
CCCCCAATCCTTGGCTTGATCTTCCAAACTTGTCAAGTTTAGGCAGTTAT
ATCATAGGTTTACAGTAGTTTATACCCGAGCTACTGTCAGTCCTTGTAGG
CAAGGTATAAATATGGCTCTAAGTCGGATAAGCATCTGGCCATCCACCAA
GGGAGTAATGAAAGCCGTGGTCTGGGAGACAAATGTATTGTTAAGCATTA
CCTTACGGTTGAGGACTGACCATGGGTTTACCCACACTAATGCTTCAAGG
GAAGCAAGCAAAATCTACGATTTAGCAGCACTAGTGACTGGAATTCGGCC
ATACCGGGGATCAAACCAACAACCCTCGGATGAACCAACGATAGATTACT
GCATATTTCCTTTTTTTGTTTATTTCAGAGTTCTAACACTAGCAATACTT
ACCTAACACGACTGACTAGCATTTGTTTGCTTTGAGTGTTGACTCCAGGC
ATGAACCTCTTTTACATAAATGTAGAAATTTGCGTTATCCGAGGGTTGTT
GGTTCGATCCCCGGGCTTGCCAAGTTCCGGCAAGTTCCGGTGTTTAGTCA
CACCCATTGTTGGTTTCCCTTGCGGGATTAAAGTGGGCGTACCTGTGGTC
ATTCCTCGACGGTAAGGTAAATTCATGATAAATTTGACCGCCAAGCTGAC
TACGTCTCAAAAGAGATTTCCCTAGCTGGGCAGATATGCCCGGGGCCTTC
CAAACAAAACAAACAAAAATGTAGAAATAAACTCGATTGCACATACTATC
TCATTATCACAGGTGTTTCGAAACAGTCCCATGAACATTTAGAAAAAAAA
GAGTTATAATATTTTGTTTTCACTTTTCAGCATGTGACTGCGTGCGAAAA
CGAATTGGAGAGAGCTTTATCATTTGCTCATGAATTCAAGAGCAAACTCG
AGGAAGAGGAATCTGCCAAGGAAAAACTGCTGCTTGACCGAGAGAAAATC
GGCAAGAATCTCCAGGAGCTCGCCCGAAAGGTCCAGGAGGTATTGAAATT
TCTTCAGATTGGTTCTTTCACTAGCTTGCTCTACATAAGTGTACTAAAAG
TGGTATCATCCTGTTTTTTCCTAATAGATGGGCAGGGACAAAGAGTCCCT
GCAGCAGGAGTTGCTGTCCCAAAGGACCAAAAATACCGATCTAGAAGTGA
TGATTGGTCAAAGCAAAGACTCGACCACCAAGTTGAAAACCGATTTCATG
ACTGAACGAAGAGACTTTCAAATTCAAATTGCTGACCTGGAGACAAGACA
GGTGAGAGTCACACAAAGTCATGGCCAAGTCTCCTTGGGTCAATAATGGT
TCGCCTTTCCAGGAGTCTTTGGAGGATCAGCTCAAGCAGAATCAGACTTT
GGAGAGCAATCTCCACGACTTCTATCAGAGCCAAATGGAGACCATTCTGG
GTGAAAAGGTTGGCATGCTCCAGAACCATGTGGAGCAGCTGGAGCAAACC
ATGATTCAAGAAAGAGAGGATCTCGTCAAACAAATCCATTCAGAGCACTC
TCAGCAACTCGACGAACTAAGAGAGCGGCAAGTTTACTTTTTTCTTGGGA
TGCATCCACATCGTTTAAGGCAAAATTGTTGCCAAACCACCGAACGTTGT
AGCAAATCAAAGAAGTCCAATGGGAGATAATTCACAGAGCACATTAAAAC
AATTTTTTAAGTGTGAGATTTAATCAATTTATACTTAACCGAGAGCAAGG
TTCGTACCAATTAGGATGGTAAACATCTGATTAGGTTCTGAGGGAAAAAT
AATAAAAATTGGTAATTTAAATATGGTTGAAAGACAGCAGCTGTTGAAAT
GCTCGGGACTGCAAATTTCATTGAATGTGCGCGTAAAAACATGTATCTCT
CATATGAATTATCGTCGTTAATCCGGAAACTAACAGAATGAAATGTAAAA
GAAAAGAACTCCAAAATTGAAATGGCTACTAAATTTCGGTGTCCGACTTG
GTGCATTCTCAGTGATGCCTTAAAGAAAATGTAGAACAGGCACATATGCG
TAATGTATTTTTGTCAAATATTGAGCCTTTTTGTAATCGTACATTCTGCA
TTTTTCACCCATTTCTCAATTGGTAAATACGTTTTTCGATGGCTTGCTAA
AAAATGAAAATCTGTTTGAGTGTAAAATTCCTAGCACTTTCAATTTTTCC
TATTTCATTAGAATTGTTTATCTTCAAGATCAACGATCCCGATCATCCAG
TTATACATTCATTATTTGTAATCACCACATAGGGCAACGTTGTATTCAAA
CCACGTGGGGATTGCTTGTGATACTGATTATACGGGATTGTAGGGATGAT
GACTCTTGGCTAAGTGTTAATGTCTGAATTGGTTGCCTTTCAGGTTTGCG
CACGAGGTCCAAGCTTTAGTTGGCCAATATTCCGAGCAAAAGTCCACTTT
GGAGGCTTCTTTGCGGGCAGCCAGACAGGAGGCCGATTGTCTGCGAGAGC
AATTGAGACTCTCTGAGAGGAAGGCCAGTCACGAATTGGGCGACTTCTTC
AAGCCTTTGACCTTTGCTCGGTCGTCGGAGCAACGAATTCGCGCAGCCGA
GACCAGTGATTCGTCCTCGGTGGAATCGGCCAAAATCTCCAAGTCCTGGA
CACGATATCAGAAGAATCTGAGCGTGGGCTTAAAGTCCCTAGAGACATCC
GGGCCCAACAACCTGCGTACCTCATTAAGAACCATGGCTCAATCCACCAG
TCTGGAGAGATCGTCAACTACTTTGCAGCATTCGTTGGACAGCACTGAAC
TTGGGGATGTCTTGACCATGGAGGAGAGGGAGGATATCGTTAAGCAATTC
ATCTCGCAGGTGCGAGTCGTAATGAAGGCTTTGGGTTAAAATTCAGTGCT
CATGATGTGCTCTTGTTATCCTAGTTCCTGAGAGAGAATCCCAACGCAGT
TCACGATAAATCCCTCATGGAAGGTTTGGATAGCATGAGTTCGCAGATGG
TTCAAAAACCAAGCCTGTATAGGCCTAACTCTAGACACCAAGGAGCTAAA
TTG
back to top
Synonyms
The feature 'conserved hypothetical protein' has the following synonyms
Synonym
Tk04057
Add to Basket