radical sam domain protein, maker-scaffold642_size120736-snap-gene-0.23 (gene) Tigriopus kingsejongensis

Overview
Nameradical sam domain protein
Unique Namemaker-scaffold642_size120736-snap-gene-0.23
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of radical sam domain protein vs. nr
Match: gi|1325277170|ref|XP_023323221.1| (uncharacterized protein LOC111697431 [Eurytemora affinis])

HSP 1 Score: 63.5438 bits (153), Expect = 3.284e-8
Identity = 44/140 (31.43%), Postives = 67/140 (47.86%), Query Frame = 0 
Query:   28 TLPFLT-SYPIITTRGRNSEQFDANEGFFIQYVMKFHPGTRSDYKFKVAPPPNVR---ICQMAILHIGDNFPCAQPPG--PSPTGHENIELVYDTIGSTPNGCGRDAEYTFWGLTNWGREPIISDLTPDEDSIQIVAYFQ 161
            T P L+ + PI+       E  D      I++VMK  P TR+ YKF+  P  ++    IC+M +  IG+N PCA  P         E + + Y    S+    G         LTNWG+ P+  DL  DE++++I  +F+
Sbjct:  692 TFPELSLTTPILKAYNAPIETIDVGGIRHIRHVMKTRPQTRALYKFEAIPFSDLNVGYICKMRVRKIGNNMPCATIPSGFVDKNYFEKVNIDYKDKTSSIINLGL--------LTNWGQLPMQEDLYADENAVEIDVFFR 823
The following BLAST results are available for this feature:
BLAST of radical sam domain protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of radical sam domain protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of radical sam domain protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1325277170|ref|XP_023323221.1|3.284e-831.43uncharacterized protein LOC111697431 [Eurytemora a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold642_size120736supercontigscaffold642_size120736:103077..103791 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteP:metabolic process
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold642_size120736-snap-gene-0.23-mRNA-1maker-scaffold642_size120736-snap-gene-0.23-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold642_size120736:103077..103791+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold642_size120736-snap-gene-0.23 ID=maker-scaffold642_size120736-snap-gene-0.23|Name=radical sam domain protein|organism=Tigriopus kingsejongensis|type=gene|length=715bp|location=Sequence derived from alignment at scaffold642_size120736:103077..103791+ (Tigriopus kingsejongensis)
TTTTCTGGGCAGAGTTTGTCTGGGGTCAACCAGAGTTGCCTGTCCAATAA
TAACCTTCAATCCGTTCAAATAGATTTTGCCGGCATTGGCGTGGACACTT
TGCCATTCCTCACTTCCTACCCAATAATTACCACCCGAGGGCGCAACTCG
GAGCAATTCGATGCCAACGAAGGATTTTTCATCCAATACGTCATGAAATT
CCATCCGGGCACAAGATCTGACTACAAATTCAAAGTGGCCCCCCCACCTA
ATGTCCGGATTTGCCAGATGGCCATTTTGCACATTGGCGACAACTTCCCG
TGTGCCCAGCCACCCGGTCCAAGCCCTACCGGCCATGAGAACATCGAGTT
GGTCTACGACACCATCGGTAGCACTCCGAATGGGTGCGGCAGAGATGCCG
AGTATACGTTCTGGGTGCGTGCACGCGTCTGGGATGTACTGTTCATACTT
TTCATGAGTTCGGCCTGCTCTGGAAAACGAGACATCAGAACGGCTTGGTT
ATTTGCAGGGGCTGACCAATTGGGGTCGAGAACCGATCATTAGTGACCTC
ACTCCGGACGAGGATTCGATTCAAATTGTGGCGTATTTCCAAGTGTGCGA
TGAAGCTCTTGGAGTTCCGGGAGAAACAGTCTCTATCGCGTACTCACTTG
ATCCTCATAATGCCAGAACGACTAGCATGTCCGAGATCACCCTCTCAGGC
AAGATCAAAACCTTT
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Synonyms
The feature 'radical sam domain protein' has the following synonyms
Synonym
Tk12588
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