achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre, maker-scaffold662_size116868-snap-gene-0.16 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24") HSP 1 Score: 87.0409 bits (214), Expect = 6.147e-18 Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 0 Query: 149 EDERPTDEMDVIPSEDSNSAQSATFTVCPICQCCFNDK--HCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVR 260 ++ER T + ++I T VC +C DK HYGG++C+SCRAFFRR+ K + C + C IT TR+ CQ CRY CL+SGM PS VL +++K R Sbjct: 64 QNERKTTDTNLIDINKKRRKPKMTEMVCNVC----GDKAPDHIHYGGIACFSCRAFFRRS--VPKHTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSR 171
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3") HSP 1 Score: 75.0998 bits (183), Expect = 3.257e-14 Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 0 Query: 175 VCPICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLVVKEPVQP 277 C IC ND HYG ++C SCRAFFRRA E + C R+ C IT++TR+ CQ CR++ CL++GM + V+ + +K+ + KKL ++ + P Sbjct: 62 TCHICSDTANDH--IHYGAIACXSCRAFFRRAVICNAE--YHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVMSESEKREKKEKIRLKKLKAQQLLDP 160
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5") HSP 1 Score: 72.4034 bits (176), Expect = 2.900e-13 Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 0 Query: 190 HYGGVSCYSCRAFF-RRAHQGTKEPNFKCKR-----ESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQK 257 HYG ++C+SCRAFF R H+GT+E F+C R +C IT+ TR CQ CRY CL +GM PS V +++ Sbjct: 149 HYGAIACFSCRAFFGRTVHKGTQE-RFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEER 221
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. L. salmonis genes
Match: EMLSAG00000004451 (supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1 gene:EMLSAG00000004451 transcript:EMLSAT00000004451 description:"snap_masked-LSalAtl2s231-processed-gene-9.18") HSP 1 Score: 70.4774 bits (171), Expect = 1.199e-12 Identity = 37/86 (43.02%), Postives = 48/86 (55.81%), Query Frame = 0 Query: 176 CPICQCCFNDK-HCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVR 260 CP+C DK FHYG SC SC+ FF+R Q K N+ C R S+C +T TR+KC CR+D CL GM + +D + R Sbjct: 155 CPVC----GDKISGFHYGIFSCESCKGFFKRTVQNKK--NYVCLRGSQCPVTISTRKKCPACRFDKCLNIGMKLEAIREDRTRGGR 234
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22") HSP 1 Score: 69.3218 bits (168), Expect = 2.320e-12 Identity = 35/86 (40.70%), Postives = 48/86 (55.81%), Query Frame = 0 Query: 178 ICQCC--FNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKC-KRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVR 260 +CQ C KH + YGG C SCRAFFRR+ Q F C + C I +TR+ CQ CR+ C+ +GM S VL D +++ + Sbjct: 105 LCQICGEVAGKHVY-YGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSK 189
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19") HSP 1 Score: 68.5514 bits (166), Expect = 3.578e-12 Identity = 43/122 (35.25%), Postives = 61/122 (50.00%), Query Frame = 0 Query: 162 SEDSNSAQSATFTVCPICQCC--FNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESR-CDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLVVKEPVQPRPS 280 SEDS+ + +CQ C KH + YGG C SCRAFFRR+ Q F C +++ C I KTR+ CQ CR+ C+ +GM S V D +++ + K + + P PS Sbjct: 90 SEDSSQIIIGRQALPRLCQICGEVAGKHVY-YGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSK-----KSAMTLNNNKPPLPS 205
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. L. salmonis genes
Match: EMLSAG00000000733 (supercontig:LSalAtl2s:LSalAtl2s1117:84476:96586:1 gene:EMLSAG00000000733 transcript:EMLSAT00000000733 description:"maker-LSalAtl2s1117-snap-gene-1.23") HSP 1 Score: 64.6994 bits (156), Expect = 7.597e-11 Identity = 29/85 (34.12%), Postives = 44/85 (51.76%), Query Frame = 0 Query: 162 SEDSNSAQSATFTVCPICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGM 246 S+ +NS +A + P C+ C + HYG ++C C+ FFRR+ N++C R+ C + R +CQ CR CL GM Sbjct: 31 SDSNNSVHNAQIEIIP-CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVV--NYQCPRQKNCIVDRVNRNRCQFCRLQKCLALGM 112
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0") HSP 1 Score: 62.7734 bits (151), Expect = 2.486e-10 Identity = 28/75 (37.33%), Postives = 39/75 (52.00%), Query Frame = 0 Query: 178 ICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVL 252 +C C + +HY ++C C+ FFRR+ TK N+ CK C+I RRKCQ CR C +GM V+ Sbjct: 172 LCLVCGDRASGYHYNALACEGCKGFFRRS--ITKNSNYTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVV 244
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. L. salmonis genes
Match: EMLSAG00000013004 (supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 gene:EMLSAG00000013004 transcript:EMLSAT00000013004 description:"augustus_masked-LSalAtl2s98-processed-gene-9.1") HSP 1 Score: 62.7734 bits (151), Expect = 3.222e-10 Identity = 29/85 (34.12%), Postives = 43/85 (50.59%), Query Frame = 0 Query: 178 ICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFR 262 +C C ++ C HYG +C C+ FF+R Q K + C + C + ++ R +CQ CR+ CL GM +V D K R R Sbjct: 408 LCAVCGDNAACQHYGVRTCEGCKGFFKRTVQ--KNAKYVCLADKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGR 490
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. L. salmonis genes
Match: EMLSAG00000008071 (supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 gene:EMLSAG00000008071 transcript:EMLSAT00000008071 description:"snap_masked-LSalAtl2s47-processed-gene-3.10") HSP 1 Score: 62.003 bits (149), Expect = 4.165e-10 Identity = 35/102 (34.31%), Postives = 53/102 (51.96%), Query Frame = 0 Query: 179 CQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLVVKEP-VQPRP 279 C C + FHYG SC +C+AFF+R QG E + + C+I ++ R+ CQ CR+ CL+ GM V D +VR ++++ P +QP P Sbjct: 271 CLVCGDIASGFHYGVSSCEACKAFFKRTIQGNIE--YTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGVRLD---RVRGGRQKYRRMIESSPYIQPPP 367
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. SwissProt
Match: gi|74957213|sp|O16963.2|NH130_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-130) HSP 1 Score: 82.4185 bits (202), Expect = 3.484e-15 Identity = 51/145 (35.17%), Postives = 71/145 (48.97%), Query Frame = 0 Query: 159 VIPSEDSNSAQSATFTVCPICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLVVKEPVQPRPSPY-------ELPQ--KRFLGKPH 294 + P E+ + Q + CQ C H H+G +SC +C AFFRRA GTK +KCK+++ CDI E R KC+KCR D C + GMDP RF+ + L+ P + LP+ + FLG+PH Sbjct: 18 ISPMEEDMNCQELVVNL-YTCQVCALPAHGNHFGAISCRACAAFFRRACTGTK-TTYKCKKQNNCDIWENGRYKCKKCRLDRCNEVGMDPG----------RFQ--FDRDLISATEKYPNSKNFRRTFGMSRLPETIEHFLGRPH 148
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. SwissProt
Match: gi|1729929|sp|Q02965.2|THB_LITCT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 80.1073 bits (196), Expect = 1.495e-14 Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 0 Query: 178 ICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDD-----------DQKKVRFRNFLKKKLVVKEPVQPRPSPYELPQ 286 +C C + +HY ++C C+ FFRR Q P++ CK E +C I + TR +CQ+CR+ C+ GM LVLDD + ++ R ++ L+K LV K +P P +EL Q Sbjct: 18 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENREKRRKDELQKTLVQKP--EPTPEEWELIQ 135
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. SwissProt
Match: gi|135713|sp|P18117.1|THBA_XENLA (RecName: Full=Thyroid hormone receptor beta-A; Short=TRbetaA; Short=xTR; AltName: Full=Nuclear receptor subfamily 1 group A member 2-A) HSP 1 Score: 76.6406 bits (187), Expect = 1.581e-13 Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 0 Query: 178 ICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQ-----------KKVRFRNFLKKKLVVK-EPVQ 276 +C C + +HY ++C C+ FFRR Q P++ CK E +C I + TR +CQ+CR+ C+ GM LVLDD++ ++ R ++ ++K LV K EP Q Sbjct: 18 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRKLIEENREKRRKDEIQKSLVQKPEPTQ 128
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. SwissProt
Match: gi|215273960|sp|Q9PVE4.2|THB_DANRE (RecName: Full=Thyroid hormone receptor beta; Short=TR-beta; Short=TRb; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=Thyroid hormone receptor beta-1; Short=TRbeta1) HSP 1 Score: 75.8702 bits (185), Expect = 4.046e-13 Identity = 38/117 (32.48%), Postives = 59/117 (50.43%), Query Frame = 0 Query: 178 ICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLV-----------VKEPVQPRPSPYE 283 +C C + +HY ++C C+ FFRR Q P + CK E +C I + TR +CQ+CR+ C+ GM LVLDD ++ K+KL+ +++ V RP P + Sbjct: 31 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKR------LAKRKLIEENRERRRREELQKTVWDRPEPTQ 141
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. SwissProt
Match: gi|6094474|sp|Q91279.1|THB_PAROL (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 75.485 bits (184), Expect = 4.795e-13 Identity = 34/93 (36.56%), Postives = 51/93 (54.84%), Query Frame = 0 Query: 178 ICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLV 270 +C C + +HY ++C C+ FFRR Q P + CK E +C I + TR +CQ+CR+ C+ GM LVLDD ++ K+KL+ Sbjct: 31 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKR------LAKRKLI 117
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. SwissProt
Match: gi|586094|sp|P18113.2|THB_RAT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=c-erbA-2; AltName: Full=c-erbA-beta) HSP 1 Score: 75.8702 bits (185), Expect = 5.280e-13 Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = 0 Query: 178 ICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLV 270 +C C + +HY ++C C+ FFRR Q + P++ CK E +C I + TR +CQ+CR+ C+ GM LVLDD ++ K+KL+ Sbjct: 106 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR------LAKRKLI 192
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. SwissProt
Match: gi|586093|sp|P37242.1|THB_MOUSE (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=c-erbA-2; AltName: Full=c-erbA-beta) HSP 1 Score: 75.8702 bits (185), Expect = 5.868e-13 Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = 0 Query: 178 ICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLV 270 +C C + +HY ++C C+ FFRR Q + P++ CK E +C I + TR +CQ+CR+ C+ GM LVLDD ++ K+KL+ Sbjct: 106 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR------LAKRKLI 192
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. SwissProt
Match: gi|135715|sp|P18119.1|THBB_XENLA (RecName: Full=Thyroid hormone receptor beta-B; Short=TRbetaB; AltName: Full=Nuclear receptor subfamily 1 group A member 2-B) HSP 1 Score: 75.485 bits (184), Expect = 6.135e-13 Identity = 37/112 (33.04%), Postives = 60/112 (53.57%), Query Frame = 0 Query: 178 ICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFL------KKKLVVKEPVQPRPSPYE 283 +C C + +HY ++C C+ FFRR Q P++ CK E +C I + TR +CQ+CR+ C GM LVLDD K++ R + ++K +++ + RP P + Sbjct: 59 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCKTVGMATDLVLDDS-KRLAKRKLIEENREKRRKDEIQKSIVQRPEPTQ 169
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. SwissProt
Match: gi|3915110|sp|Q28571.1|THB_SHEEP (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 75.0998 bits (183), Expect = 7.869e-13 Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 0 Query: 178 ICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLV 270 +C C + +HY ++C C+ FFRR Q P++ CK E +C I + TR +CQ+CR+ C+ GM LVLDD ++ K+KL+ Sbjct: 104 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR------LAKRKLI 190
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. SwissProt
Match: gi|586092|sp|P10828.2|THB_HUMAN (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=c-erbA-2; AltName: Full=c-erbA-beta) HSP 1 Score: 74.7146 bits (182), Expect = 1.095e-12 Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 0 Query: 178 ICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLV 270 +C C + +HY ++C C+ FFRR Q P++ CK E +C I + TR +CQ+CR+ C+ GM LVLDD ++ K+KL+ Sbjct: 106 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR------LAKRKLI 192
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. nr
Match: gi|657600358|gb|AID52840.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 98.2117 bits (243), Expect = 2.421e-17 Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 0 Query: 179 CQCCFND--KHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLVVKE 273 CQ C + +H HYG ++C+SC+AFFRR Q F CK C++ K R+KC+KCRY+ C++ GM PSLVL D++K RF+ L KK + K+ Sbjct: 29 CQICQDPAIRH-LHYGAITCFSCKAFFRRTSQSKAYQKFMCKSTGECNVLHKLRKKCRKCRYEKCIRVGMKPSLVLSDEEKIKRFKKSLSKKAMDKD 124
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. nr
Match: gi|657600356|gb|AID52839.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 96.6709 bits (239), Expect = 9.696e-17 Identity = 51/138 (36.96%), Postives = 78/138 (56.52%), Query Frame = 0 Query: 135 HTRPPSEDMNSSEEEDERPTDEMDV--IPSEDSNSAQSATFTVCPICQCCFN--DKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKK 268 HT E M + E P+++ DV S ++ + C+ C +H HYG V+C+SCRAFFRR+ Q N+ C+R+ +C+I K+R+ CQKCRY+ CL +GM P+ VL ++++ RFR +KK Sbjct: 42 HTSEDEEYMGGFSDPGEGPSEQNDVRMHSSGKKCKKENPLISDTEKCRVCGEPAARH-VHYGSVTCFSCRAFFRRSIQNKAWNNYSCRRQGQCEIMLKSRKNCQKCRYEECLSAGMKPTWVLSEEERSRRFRKTREKK 178
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. nr
Match: gi|1325278314|ref|XP_023323803.1| (uncharacterized protein LOC111697899 isoform X1 [Eurytemora affinis]) HSP 1 Score: 95.9005 bits (237), Expect = 2.676e-16 Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 0 Query: 167 SAQSATFTVCPICQCCFND--KHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLVVK 272 S Q+++ TV +C+ C K HYGGV CYSCRAFFRRA Q + + C C +T R++C CRY C GM SL+L++++KK RFRN LK+K ++ Sbjct: 41 SNQTSSVTVESLCEVCEEKVPKARVHYGGVCCYSCRAFFRRATQ--RGIDTTCNVGGGCKVTHSERKQCTACRYAKCQSVGMKTSLILNENEKKARFRNILKRKASLQ 146
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. nr
Match: gi|1325278316|ref|XP_023323804.1| (uncharacterized protein LOC111697899 isoform X2 [Eurytemora affinis]) HSP 1 Score: 95.5153 bits (236), Expect = 3.286e-16 Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 0 Query: 167 SAQSATFTVCPICQCCFND--KHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLVVK 272 S Q+++ TV +C+ C K HYGGV CYSCRAFFRRA Q + + C C +T R++C CRY C GM SL+L++++KK RFRN LK+K ++ Sbjct: 41 SNQTSSVTVESLCEVCEEKVPKARVHYGGVCCYSCRAFFRRATQ--RGIDTTCNVGGGCKVTHSERKQCTACRYAKCQSVGMKTSLILNENEKKARFRNILKRKASLQ 146
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. nr
Match: gi|657600362|gb|AID52842.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 94.7449 bits (234), Expect = 5.224e-16 Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 0 Query: 178 ICQCCFNDKHCFH--YGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLK 266 IC C + FH YG +C SCRAFFRR Q + CKR + CD+T+ R KC+KCR + CLK+GM+ V+++ QK RFRN+ K Sbjct: 34 ICAICLTNSDSFHLNYGAPTCLSCRAFFRRIVQNGRVNKLTCKRNNDCDVTQSNRTKCRKCRLEACLKAGMNMQSVMNEIQKHDRFRNYDK 124
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. nr
Match: gi|1325316701|ref|XP_023340074.1| (uncharacterized protein LOC111710243 [Eurytemora affinis]) HSP 1 Score: 92.0485 bits (227), Expect = 1.078e-15 Identity = 51/116 (43.97%), Postives = 67/116 (57.76%), Query Frame = 0 Query: 147 EEEDERPTDEMDVIPSEDSNSAQSATFTVCPICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESR-CDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRF 261 EE+ E PT +PS +S A +T CP+C+ FHYGG+ CYSC+AFFRR +K +KC+ S CD++ RR CQ CRY C+ +GM P LVL D+Q RF Sbjct: 252 EEDQEEPT----AVPSPES--ANKSTID-CPVCKDVAIAH--FHYGGMCCYSCKAFFRRVVNTSKANKYKCRNGSNLCDVSLGNRRSCQACRYRKCVSAGMKPGLVLSDEQCTRRF 358
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. nr
Match: gi|657600364|gb|AID52843.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 92.0485 bits (227), Expect = 1.251e-15 Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = 0 Query: 173 FTVCPICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLVVKE 273 C +C ND HYG ++CYSCRAFFRR+ + E +++C R S+C +T++TR+ CQ CR+ C+ GM PS V+ +D++K LKKK+ +++ Sbjct: 57 IVACSVCGDIANDH--VHYGAIACYSCRAFFRRS--VSNEAHYECSRNSKCPVTKETRKHCQSCRFKKCIDIGMKPSWVMTEDERKDNRAKILKKKMELRK 153
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. nr
Match: gi|1325280017|ref|XP_023324670.1| (uncharacterized protein LOC111698547 [Eurytemora affinis]) HSP 1 Score: 91.2781 bits (225), Expect = 2.734e-15 Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 0 Query: 178 ICQCCFND--KHCFHYGGVSCYSCRAFFRRA--HQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLVVKEPVQ--PRPSPYELPQKRFLGK 292 +C+ C + +H HYGG C+SC+AFFRRA Q + F+CK ES C+I K R+ CQ CR+ C+ +GM+PS VL DDQ+K RF+ + + + Q R +LP +R G+ Sbjct: 40 LCRICGDGAVRH-VHYGGHCCFSCKAFFRRAVNWQTKNKRTFQCKFESGCEINIKNRKTCQSCRFQKCITTGMNPSWVLSDDQRKKRFKKYRETGELSPTSSQDSSREGELDLPLERGSGR 159
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. nr
Match: gi|1216632039|gb|ASL70531.1| (nuclear receptor [Brachionus calyciflorus]) HSP 1 Score: 87.4261 bits (215), Expect = 6.250e-14 Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 0 Query: 179 CQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLVVKEPVQ 276 C C + H+GG+SC SC+AFFRR+ Q + ++KC C + TR+ CQ CRY CL GM P VL DD++ ++ N K K K+ VQ Sbjct: 122 CHVCGDKSTGSHFGGISCESCKAFFRRSVQKNRHEDYKCSYSGECKMNTNTRKICQFCRYKTCLSIGMRPKWVLSDDERHQKYGNRRKNK--QKQEVQ 217
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. nr
Match: gi|303324985|pdb|3M9E|A (Chain A, Thyroid Hormone Beta Dna Binding Domain Homodimer With Inverted Palindrome Tre >gi|303324986|pdb|3M9E|B Chain B, Thyroid Hormone Beta Dna Binding Domain Homodimer With Inverted Palindrome Tre >gi|303324989|pdb|3M9E|E Chain E, Thyroid Hormone Beta Dna Binding Domain Homodimer With Inverted Palindrome Tre >gi|303324990|pdb|3M9E|F Chain F, Thyroid Hormone Beta Dna Binding Domain Homodimer With Inverted Palindrome Tre) HSP 1 Score: 78.9518 bits (193), Expect = 6.558e-14 Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = 0 Query: 178 ICQCCFNDKHCFHYGGVSCYSCRAFFRRAHQGTKEPNFKCKRESRCDITEKTRRKCQKCRYDLCLKSGMDPSLVLDDDQKKVRFRNFLKKKLV 270 +C C + +HY ++C C+ FFRR Q + P++ CK E +C I + TR +CQ+CR+ C+ GM LVLDD ++ K+KL+ Sbjct: 5 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKR------LAKRKLI 91 The following BLAST results are available for this feature:
BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 20
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BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold662_size116868:41382..61499- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold662_size116868-snap-gene-0.16 ID=maker-scaffold662_size116868-snap-gene-0.16|Name=achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre|organism=Tigriopus kingsejongensis|type=gene|length=20118bp|location=Sequence derived from alignment at scaffold662_size116868:41382..61499- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tre' has the following synonyms
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