AGAP009045-PA, maker-scaffold671_size114370-snap-gene-0.30 (gene) Tigriopus kingsejongensis

Overview
NameAGAP009045-PA
Unique Namemaker-scaffold671_size114370-snap-gene-0.30
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of AGAP009045-PA vs. SwissProt
Match: gi|74949008|sp|Q9W3T5.1|SMIM4_DROME (RecName: Full=Small integral membrane protein 4)

HSP 1 Score: 77.7962 bits (190), Expect = 1.488e-19
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 0
Query:   12 LLQRLPGR-RFGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIVLKEERLVQSGQARA 78
            LL   PG+ RFGVYR LPLFF +GA LE++MI+W VGE NFYRT+K++ A + V +++ L    QARA
Sbjct:   11 LLDSWPGKKRFGVYRFLPLFFLLGAGLEFSMINWTVGETNFYRTFKRRQAKNYVEEQQHL----QARA 74          
BLAST of AGAP009045-PA vs. SwissProt
Match: gi|205830728|sp|Q8C1Q6.2|SMIM4_MOUSE (RecName: Full=Small integral membrane protein 4; AltName: Full=Small nucleolar RNA host gene 8)

HSP 1 Score: 57.3806 bits (137), Expect = 1.705e-11
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0
Query:   13 LQRLPGR-RFGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMA 60
            LQR+PG+ RFG+YR LP FF +G A+E+ MI   VG+  FY  Y++K +
Sbjct:   11 LQRVPGKQRFGIYRFLPFFFVLGGAMEWIMIKVRVGQETFYDVYRRKAS 59          
BLAST of AGAP009045-PA vs. SwissProt
Match: gi|205830727|sp|Q8WVI0.2|SMIM4_HUMAN (RecName: Full=Small integral membrane protein 4)

HSP 1 Score: 56.225 bits (134), Expect = 3.458e-11
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0
Query:   11 NLLQRLPGR-RFGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMA 60
             +LQR+PG+ RFG+YR LP FF +G  +E+ MI   VG+  FY  Y++K +
Sbjct:    9 RILQRVPGKQRFGIYRFLPFFFVLGGTMEWIMIKVRVGQETFYDVYRRKAS 59          
BLAST of AGAP009045-PA vs. nr
Match: gi|646705170|gb|KDR13037.1| (hypothetical protein L798_13305 [Zootermopsis nevadensis])

HSP 1 Score: 79.337 bits (194), Expect = 1.000e-17
Identity = 36/69 (52.17%), Postives = 53/69 (76.81%), Query Frame = 0
Query:    6 NERLANLLQRLPGRR-FGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIV---LKEERL 70
            + RL   L R PG++ FG+YR LP+FF +GAALE++MI+WHVGEVNFYRT+K++ A  +    ++EE++
Sbjct:    5 SSRLRWFLDRWPGKKYFGIYRFLPIFFVLGAALEFSMINWHVGEVNFYRTFKRRQAQQLAQERIQEEKI 73          
BLAST of AGAP009045-PA vs. nr
Match: gi|969469237|ref|XP_015046301.1| (uncharacterized protein Dyak_GE29135 [Drosophila yakuba] >gi|948565863|gb|KRK06741.1| uncharacterized protein Dyak_GE29135 [Drosophila yakuba])

HSP 1 Score: 79.337 bits (194), Expect = 1.241e-17
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 0
Query:   12 LLQRLPGR-RFGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIVLKEERLVQSGQARALAS 81
            LL   PG+ RFGVYR LPLFFF+GA LE++MI+W VGE NFYRT+K++ A + V +++ L    QA+A  S
Sbjct:   11 LLDSWPGKKRFGVYRFLPLFFFLGAGLEFSMINWTVGETNFYRTFKRRQAKNYVEEQQHL----QAQATHS 77          
BLAST of AGAP009045-PA vs. nr
Match: gi|1026568096|gb|OAD56561.1| (hypothetical protein WN48_03248 [Eufriesea mexicana])

HSP 1 Score: 78.9518 bits (193), Expect = 1.377e-17
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 0
Query:    8 RLANLLQRLPGRRFGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIVLKEERLVQSGQ 75
            ++   + ++PG+ FG +R LPLFF MG  +E+ MIHWHVGEVNFY+TYK+++  D V  E RL Q  +
Sbjct:    7 KIVKFVHKMPGKAFGEFRFLPLFFVMGGVIEFLMIHWHVGEVNFYKTYKRRIINDTV--EGRLRQMNE 72          
BLAST of AGAP009045-PA vs. nr
Match: gi|970880484|ref|XP_015112025.1| (PREDICTED: small integral membrane protein 4 [Diachasma alloeum])

HSP 1 Score: 79.7221 bits (195), Expect = 1.641e-17
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 0
Query:    9 LANLLQRLPGRR-FGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIVLKEERLVQS 73
            L  LL++ PG+R FGVYR LP+FF +GA LE++MI+W +GEVNFY TYKK+   +IV  EE+L  S
Sbjct:   44 LGRLLKKFPGKRYFGVYRFLPVFFIVGAGLEFSMINWRIGEVNFYNTYKKRKVEEIV--EEKLHHS 107          
BLAST of AGAP009045-PA vs. nr
Match: gi|939671033|ref|XP_014282212.1| (PREDICTED: small integral membrane protein 4 [Halyomorpha halys])

HSP 1 Score: 78.1814 bits (191), Expect = 3.036e-17
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 0
Query:    3 VRRNERLANLLQRLPGRR-FGVYRILPLFFFMGAALEYTMIHWHV-GEVNFYRTYKKKMALDIVLKEERLVQSGQA 76
            +RRNE L   L   PG+R FG++R LP+FF +GAALEY+MI+W   G+VNFYRTYKK+   D   K E+LV   +A
Sbjct:    1 MRRNESLKKFLDYWPGKRIFGIFRFLPIFFCLGAALEYSMINWDFRGQVNFYRTYKKRQIQD---KLEQLVHEEKA 73          
The following BLAST results are available for this feature:
BLAST of AGAP009045-PA vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of AGAP009045-PA vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
gi|74949008|sp|Q9W3T5.1|SMIM4_DROME1.488e-1955.88RecName: Full=Small integral membrane protein 4[more]
gi|205830728|sp|Q8C1Q6.2|SMIM4_MOUSE1.705e-1151.02RecName: Full=Small integral membrane protein 4; A... [more]
gi|205830727|sp|Q8WVI0.2|SMIM4_HUMAN3.458e-1147.06RecName: Full=Small integral membrane protein 4[more]
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BLAST of AGAP009045-PA vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|646705170|gb|KDR13037.1|1.000e-1752.17hypothetical protein L798_13305 [Zootermopsis neva... [more]
gi|969469237|ref|XP_015046301.1|1.241e-1754.93uncharacterized protein Dyak_GE29135 [Drosophila y... [more]
gi|1026568096|gb|OAD56561.1|1.377e-1750.00hypothetical protein WN48_03248 [Eufriesea mexican... [more]
gi|970880484|ref|XP_015112025.1|1.641e-1757.58PREDICTED: small integral membrane protein 4 [Diac... [more]
gi|939671033|ref|XP_014282212.1|3.036e-1753.95PREDICTED: small integral membrane protein 4 [Haly... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold671_size114370supercontigscaffold671_size114370:28126..29154 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold671_size114370-snap-gene-0.30-mRNA-1maker-scaffold671_size114370-snap-gene-0.30-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold671_size114370:28126..29154+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold671_size114370-snap-gene-0.30 ID=maker-scaffold671_size114370-snap-gene-0.30|Name=AGAP009045-PA|organism=Tigriopus kingsejongensis|type=gene|length=1029bp|location=Sequence derived from alignment at scaffold671_size114370:28126..29154+ (Tigriopus kingsejongensis)
GAGAAAAGCTCCAAGGGCCATACCAACATCCGATGGAACACCTAAGTTGA CATGATCATCCGTGTCCAAGAACGAAGAAACGGTCCCCAAATCGCTATGT CATGATCGTCCGCCGTAACGAGCGCTTGGCCAATCTCCTCCAGCGCTTAC CGGGTCGTCGTTTTGGCGTGTACCGGATCTTGCCCCTCTTCTTCTTCATG GGCGCGGCTCTCGAGTACACTATGATCCACTGGCACGTGGGGGAAGTGAA TTTCTGTAAGTTCATGAGGGTATATCAGGCCTAATGGTCGCATTGTTTTC ATGCCCTCCTCCCGTCTTGCAGATCGCACCTACAAGAAAAAGATGGCTTT GGATATCGTGCTCAAAGAGGAGCGTTTAGTCCAGTCGGGTCAAGCCCGTG CCTTGGCCAGCCAAGCTGAATCGGCGGCTTAGAGCTCTTTGCCCCAAAGG CTGTTCTTCCATTCTCTGTATTCAGGCCTCATCATGCCGGCGGGTGTGAG TGTGGGCACCTACGTCAAAGCCTTCTTGGGGGCTTTTGTCTTCGCAGCTA TGGGCTCGCAATGTGTCCACCTGATCTATCGCCCCCTGGATGACTTGCCG CAAGTGGTGGAGGAGTTGAAACAAGCTCGAGCCCAAGAGCGGCAAGCGGC TCAAAGGTCGGCCACTTCGTCGACCAGCCCGAACTCGTCGTAGTTCGTGC CAAAGTGGCAAGTTAACGGTAGGCGTGGCACCGATGATTGAAACTCTTGG GTCGGTCAGGCCCCCCTGAGCCGAGAGTGATGTGAGCAGTGGCAACTTTG GACTCAAATTGGGCCGAAACGAGATAATGGGCTAAACTAAGTTGGAAGAA CGATCATCGATGGGCTGGAACTTTCGAAATGAAGGGCTTTTCGCGCCAAA GAAAACTTGGATCGACTCATTTGGGTCCGAGAGTCCCAGCTCGGGATCGG TGCATACATTATCTCAATGGAGGGAGGATCGACCATCATCAACTAAGTGC AGCAATAGGAAAATTAAAAAAGAACCATT
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Synonyms
The feature 'AGAP009045-PA' has the following synonyms
Synonym
Tk06013
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