longitudinals lacking, maker-scaffold691_size110934-snap-gene-0.34 (gene) Tigriopus kingsejongensis

Overview
Namelongitudinals lacking
Unique Namemaker-scaffold691_size110934-snap-gene-0.34
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of longitudinals lacking vs. L. salmonis genes
Match: EMLSAG00000007228 (supercontig:LSalAtl2s:LSalAtl2s404:613982:614914:-1 gene:EMLSAG00000007228 transcript:EMLSAT00000007228 description:"augustus-LSalAtl2s404-processed-gene-6.4")

HSP 1 Score: 98.2117 bits (243), Expect = 4.113e-24
Identity = 80/290 (27.59%), Postives = 134/290 (46.21%), Query Frame = 0
Query:   10 LKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGL---AQPGCDPIQPTPD---ELPAAASPLPNIKLEEPPSSPANPLASTSDFQSVKVEPLIMDEAMEQIVEGNPEDFLYETVEETDTGSEDPLHRNDETTLSAAGSPSWTNGEVVRLADGRGGQCLRCGKGFALFVTAVR-HFKLSHFESENLPCPYCQSVMRTKSYLKDHLRRKH 292
            LKWN F ++   +   L E  + FDV L    +  R ++AHK +L ACS  F+ I+K     +    T P+IYL+G+   H+  ++ F+Y GEV V Q +L  F+A+A++ ++K L     P      PTP    +LP  +S + N+  +    SP  P A    + +    P  M++     +  N     +ET+E   T ++D     ++  + A       N    +   G+  QC +C      +  A+R H + +H  S+ + C  C    +T+  L +H  R H
Sbjct:    9 LKWNSFDSNFKESLSDLYENEELFDVTLI---TGSRQIKAHKFVLCACSPVFRSIIK-----SAPPQTHPWIYLKGINVDHLELLISFLYHGEVKVIQEELDDFIAIAKEFEIKCLNTEKMPTSLNDSPTPSPPRDLPDLSS-VDNVSDDLLSISP--PTAQIEKYYT----PYEMNDLY---IAQNISPDKFETME---TNNKDIKLDKNKKHIRALDLE--INRYYTKQRTGKKFQCKKCS-YLTPYGNAIRNHVESNHISSKGVVCTLCSKKFKTRLSLHNHCYRVH 274          
BLAST of longitudinals lacking vs. L. salmonis genes
Match: EMLSAG00000002455 (supercontig:LSalAtl2s:LSalAtl2s1471:52173:56863:1 gene:EMLSAG00000002455 transcript:EMLSAT00000002455 description:"maker-LSalAtl2s1471-snap-gene-0.12")

HSP 1 Score: 100.908 bits (250), Expect = 4.995e-24
Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = 0
Query:    8 YCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLAQ 127
            YCL+WN+ Q ++      L     F DV L     +G  L+AHK++L+ACS +F+ +L     +T   H  P ++LR V ++ M A+L+FMY+GEVSV Q +LS+ L VAE L++KGLA+
Sbjct:   10 YCLRWNNHQHNLLSVFEDLLNHEAFVDVTLAV---EGLQLKAHKMVLSACSPYFQSML----YNTPDRH--PIVFLRDVRYSEMKALLEFMYRGEVSVDQENLSSLLKVAEGLKIKGLAE 120          
BLAST of longitudinals lacking vs. L. salmonis genes
Match: EMLSAG00000009238 (supercontig:LSalAtl2s:LSalAtl2s588:466746:467909:-1 gene:EMLSAG00000009238 transcript:EMLSAT00000009238 description:"snap_masked-LSalAtl2s588-processed-gene-4.20")

HSP 1 Score: 97.8265 bits (242), Expect = 1.962e-23
Identity = 99/351 (28.21%), Postives = 151/351 (43.02%), Query Frame = 0
Query:    7 NYCLKWNDFQAHVSGACHTLREEADFFDVVL--GC--DQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSS-HTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLAQ-----PGCDPI-------------------------QPTPDELPAAASPLPNI------KLEEPPSSPANPLASTSDFQ---SVKVEPLIMDE--------AMEQIVE--GNPEDFLYETVEETDTGSEDPLHRNDETTLSAAGSPSWTNGEVVRLADGRGGQCLRCGKGFALFVTAVRHFKLSHFESEN--LPCPYCQSVMRTKSYLKDHLRRKHKVYQGPFKG 301
            NYCL+ ND++   + +  +LR++  F DV L  GC  +     + +AH+VIL+ACSS+F  +L +    T+S  H  P + L  V    + A+LDFMY G+V++    LS+FLAVA+ L++KGL +     P  DP+                         Q    + P   +  P I        EE PSS      S++D +   S+   P +++         AM  I +    P+D L  T  E  + S     RN+  T                        C  C K F   ++  RH K  HF++EN  + CP C     +++ L  HL R H V +   +G
Sbjct:   19 NYCLRLNDYEKKYAESFRSLRDDESFADVTLVAGCSSEDDSSTSFKAHRVILSACSSYFHSLLIK----TLSPWHVHPVLLLTDVRPRDLHALLDFMYLGQVNINNEALSSFLAVAQRLRIKGLCETTFQIPKKDPVYVATGHGKRAKFMTTTTSSVLRSTTQQIIQQHPHKTTDAPIILATSAANQEEVPSSAVTEFISSNDGEFIPSLPSHPFMINTDPTTPTPAAMVTIEDKMNEPQD-LTPTHTEVISPSTPKKDRNNRKT------------------------CGYCHKDFHE-MSLKRHIKDVHFKNENTFVICPQCCKQYASQNSLYSHLNRVHGVKKEMMEG 339          
BLAST of longitudinals lacking vs. L. salmonis genes
Match: EMLSAG00000003189 (supercontig:LSalAtl2s:LSalAtl2s176:671224:672666:1 gene:EMLSAG00000003189 transcript:EMLSAT00000003189 description:"augustus-LSalAtl2s176-processed-gene-6.4")

HSP 1 Score: 94.3597 bits (233), Expect = 1.374e-22
Identity = 84/330 (25.45%), Postives = 132/330 (40.00%), Query Frame = 0
Query:    6 DNYCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLAQ--------PGCDPIQPTPDELPAAASPLPNIKLEEPPSSPANPLASTSDFQSVKVEPLIMDEAMEQIVEGNPEDFLYETVEETDTGSEDPLHRNDETTLS---AAGSPSWTNGEVVRLADG-----------------------------RGGQCLRCGKGFALF--VTAVRHFKLSHFESENLPCPYCQSVMRTKSYLKDHLRRKHK 293
            +N C+KWN++++++      L    + FDV L    S  R ++AHKVIL+ACS  F+ I++     +VS H  P IYL+ + F H+  IL F+Y GE+ V   +++  L VA+  Q+KGL           G D    +  +L ++ +     K  +  S   NP     D           + ++    E   E FLY      +    D +  N +  +S   A  S  + N    R A+G                             +G +C +C   F  F      RH +  H  ++   C  C    +T   LK H    HK
Sbjct:    5 ENLCIKWNEYESNLKEGLSELLHNEELFDVTL---ISGSRVIKAHKVILSACSPVFRSIIQ-----SVSFHPHPVIYLKDINFDHLELILSFLYYGEMRVASDEINDLLCVADVFQIKGLYNNTITSATINGEDIFIQSNSDLYSSIN-----KSFQHQSCNTNPNKECQDI-------FAPNSSLNTKRENPDESFLYSLESSYNPDLVDGVQSNCDGDVSYDMANSSSRYLNNACGREAEGANISTKDDNEKYHQSLKPEIKKHFKKSINKGFECKKC--KFTTFDRTCINRHIEYRHMITKGFCCHVCNKNYKTICTLKRHNTHFHK 312          
BLAST of longitudinals lacking vs. L. salmonis genes
Match: EMLSAG00000007481 (supercontig:LSalAtl2s:LSalAtl2s42:537429:544881:1 gene:EMLSAG00000007481 transcript:EMLSAT00000007481 description:"maker-LSalAtl2s42-augustus-gene-5.9")

HSP 1 Score: 96.2857 bits (238), Expect = 1.411e-22
Identity = 47/127 (37.01%), Postives = 80/127 (62.99%), Query Frame = 0
Query:    1 MGSDLDNYCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLAQ 127
            MG++   +CLKWN+ ++ +     TL EE    DV L    ++G+ L+AHKVIL+ACS +F+ + +       ++   P IY++ V F ++ A++++MY+GE +V Q  L +F+  AE LQ++GLA+
Sbjct:    1 MGTE-QQFCLKWNNHRSTILSVFDTLLEEESLVDVTL---TAEGQFLRAHKVILSACSPYFRIMFR------AANEKHPVIYMQNVDFENLKALVEYMYKGEANVPQHMLPSFIRTAESLQIRGLAE 117          
BLAST of longitudinals lacking vs. SwissProt
Match: gi|73621174|sp|Q7KRI2.1|LOLAL_DROME (RecName: Full=Longitudinals lacking protein-like; Short=Lola-like protein; AltName: Full=Protein Batman)

HSP 1 Score: 108.997 bits (271), Expect = 2.365e-28
Identity = 59/127 (46.46%), Postives = 83/127 (65.35%), Query Frame = 0
Query:    1 MGSDLDNYCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLAQ 127
            M SD   + LKWNDFQ ++  +   LR+E  F DV L C+   G+T +AHK++L+ACS +FK +L+++     S H  P I L+ V + H+ AIL+FMY GEV+V Q  L AFL  A+ L+VKGLA+
Sbjct:    2 MSSD-QQFFLKWNDFQTNMVTSFRHLRDEKSFTDVTLACE---GQTCKAHKMVLSACSPYFKALLEENP----SKH--PIIILKDVSYIHLQAILEFMYAGEVNVSQEQLPAFLKTADRLKVKGLAE 118          
BLAST of longitudinals lacking vs. SwissProt
Match: gi|13124701|sp|Q01295.2|BRC1_DROME (RecName: Full=Broad-complex core protein isoforms 1/2/3/4/5)

HSP 1 Score: 110.153 bits (274), Expect = 1.171e-25
Identity = 52/124 (41.94%), Postives = 82/124 (66.13%), Query Frame = 0
Query:    4 DLDNYCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLAQ 127
            D  ++CL+WN++Q+ ++ A   LR++  F DV L C   +GR+++AH+V+L+ACS +F+++LK    ST   H  P I L+ V F  + A+++F+Y GEV+V Q  L +FL  AE L+V GL Q
Sbjct:    3 DTQHFCLRWNNYQSSITSAFENLRDDEAFVDVTLAC---EGRSIKAHRVVLSACSPYFRELLK----STPCKH--PVILLQDVNFMDLHALVEFIYHGEVNVHQKSLQSFLKTAEVLRVSGLTQ 117          
BLAST of longitudinals lacking vs. SwissProt
Match: gi|13123979|sp|Q24206.2|BRC4_DROME (RecName: Full=Broad-complex core protein isoform 6)

HSP 1 Score: 110.153 bits (274), Expect = 1.382e-25
Identity = 52/124 (41.94%), Postives = 82/124 (66.13%), Query Frame = 0
Query:    4 DLDNYCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLAQ 127
            D  ++CL+WN++Q+ ++ A   LR++  F DV L C+   GR+++AH+V+L+ACS +F+++LK    ST   H  P I L+ V F  + A+++F+Y GEV+V Q  L +FL  AE L+V GL Q
Sbjct:    3 DTQHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACE---GRSIKAHRVVLSACSPYFRELLK----STPCKH--PVILLQDVNFMDLHALVEFIYHGEVNVHQKSLQSFLKTAEVLRVSGLTQ 117          
BLAST of longitudinals lacking vs. SwissProt
Match: gi|33112291|sp|Q8IN81.1|FRU_DROME (RecName: Full=Sex determination protein fruitless)

HSP 1 Score: 104.76 bits (260), Expect = 8.298e-24
Identity = 58/181 (32.04%), Postives = 93/181 (51.38%), Query Frame = 0
Query:    8 YCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLA-------QPGCDPIQPTPDELPAAASPLPNIKLEEPPSSPANPLASTSDFQSVKVEPLIMDE 181
            +CL+WN+   +++G   +L +     DV L C   +G T++AH+ IL+ACS +F+ I  Q++      H  P IYL+ V ++ M ++LDFMY+GEV+V Q+ L  FL  AE LQV+GL        +  CD ++ +    P    P             A+ +  + D    + E  + DE
Sbjct:  106 FCLRWNNHPTNLTGVLTSLLQREALCDVTLAC---EGETVKAHQTILSACSPYFETIFLQNQ------HPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLGGAGGVADAMRESRDSLRSRCERDLRDE 277          
BLAST of longitudinals lacking vs. SwissProt
Match: gi|47117851|sp|P42282.3|TTKA_DROME (RecName: Full=Protein tramtrack, alpha isoform; AltName: Full=Repressor protein fushi tarazu; AltName: Full=Tramtrack p88)

HSP 1 Score: 101.679 bits (252), Expect = 1.048e-22
Identity = 51/130 (39.23%), Postives = 78/130 (60.00%), Query Frame = 0
Query:    8 YCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLAQPGCDPIQPTP 137
            +CL+WN+ Q+++      L     F DV L     +G+ L+AHK++L+ACS +F  +   H          P + L+ VP++ M ++LDFMY+GEVSV Q  L+AFL VAE L++KGL +   D  +P+P
Sbjct:    8 FCLRWNNHQSNLLSVFDQLLHAETFTDVTLAV---EGQHLKAHKMVLSACSPYFNTLFVSH------PEKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQERLTAFLRVAESLRIKGLTEVNDD--KPSP 126          
BLAST of longitudinals lacking vs. SwissProt
Match: gi|27923726|sp|Q24174.2|ABRU_DROME (RecName: Full=Protein abrupt; AltName: Full=Protein clueless)

HSP 1 Score: 101.293 bits (251), Expect = 1.253e-22
Identity = 51/119 (42.86%), Postives = 69/119 (57.98%), Query Frame = 0
Query:    8 YCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLA 126
            Y LKWNDFQ+ +  +   LR+E DF DV L CD+   R+  AHKV+L+ACS +F+ +LK +          P + LR V    +  +L FMY GEV+V    L  FL  A  LQ++GLA
Sbjct:   78 YALKWNDFQSSILSSFRHLRDEEDFVDVTLACDE---RSFTAHKVVLSACSPYFRRLLKANPCE------HPIVILRDVRCDDVENLLSFMYNGEVNVSHEQLPDFLKTAHLLQIRGLA 187          
BLAST of longitudinals lacking vs. SwissProt
Match: gi|20455517|sp|P17789.2|TTKB_DROME (RecName: Full=Protein tramtrack, beta isoform; AltName: Full=Repressor protein fushi tarazu; AltName: Full=Tramtrack p69)

HSP 1 Score: 101.293 bits (251), Expect = 1.285e-22
Identity = 51/130 (39.23%), Postives = 78/130 (60.00%), Query Frame = 0
Query:    8 YCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLAQPGCDPIQPTP 137
            +CL+WN+ Q+++      L     F DV L     +G+ L+AHK++L+ACS +F  +   H          P + L+ VP++ M ++LDFMY+GEVSV Q  L+AFL VAE L++KGL +   D  +P+P
Sbjct:    8 FCLRWNNHQSNLLSVFDQLLHAETFTDVTLAV---EGQHLKAHKMVLSACSPYFNTLFVSHP------EKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQERLTAFLRVAESLRIKGLTEVNDD--KPSP 126          
BLAST of longitudinals lacking vs. SwissProt
Match: gi|29428068|sp|Q9W0K7.2|BAB1_DROME (RecName: Full=Protein bric-a-brac 1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.056e-22
Identity = 46/120 (38.33%), Postives = 77/120 (64.17%), Query Frame = 0
Query:    7 NYCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLA 126
             +CL+WN++Q +++     L +   F DV L CD   GR+++AHK++L+ACS +F+ +L    A T   H  P + +R V ++ + AI++FMY+GE++V Q  +   L +AE L+V+GLA
Sbjct:  101 QFCLRWNNYQTNLTTIFDQLLQNECFVDVTLACD---GRSMKAHKMVLSACSPYFQTLL----AETPCQH--PIVIMRDVNWSDLKAIVEFMYRGEINVSQDQIGPLLRIAEMLKVRGLA 211          
BLAST of longitudinals lacking vs. SwissProt
Match: gi|29428067|sp|Q9W0K4.2|BAB2_DROME (RecName: Full=Protein bric-a-brac 2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.821e-20
Identity = 40/120 (33.33%), Postives = 76/120 (63.33%), Query Frame = 0
Query:    8 YCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLAQ 127
            +CL+WN++Q++++     L +   F DV L C+   G +++AHK++L+ACS +F+ +   +          P I +R V ++ + A+++FMY+GE++V Q  ++  L VAE L+++GLA+
Sbjct:  198 FCLRWNNYQSNLTNVFDELLQSESFVDVTLSCE---GHSIKAHKMVLSACSPYFQALFYDNPCQ------HPIIIMRDVSWSDLKALVEFMYKGEINVCQDQINPLLKVAETLKIRGLAE 308          
BLAST of longitudinals lacking vs. SwissProt
Match: gi|73920873|sp|Q9V5M6.4|LOLA5_DROME (RecName: Full=Longitudinals lacking protein, isoforms J/P/Q/S/Z)

HSP 1 Score: 91.2781 bits (225), Expect = 2.966e-19
Identity = 45/123 (36.59%), Postives = 72/123 (58.54%), Query Frame = 0
Query:    4 DLDNYCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLA 126
            D   +CL+WN+ Q+ +     TL E     D  L    ++G+ L+AHKV+L+ACS +F  +L++        H  P   L+ V +  + A++D+MY+GEV++ Q  L+A L  AE LQ+KGL+
Sbjct:    3 DDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLA---AEGKFLKAHKVVLSACSPYFATLLQEQ----YDKH--PIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLS 116          
BLAST of longitudinals lacking vs. nr
Match: gi|1325312179|ref|XP_023337724.1| (protein tramtrack, beta isoform-like isoform X1 [Eurytemora affinis])

HSP 1 Score: 158.303 bits (399), Expect = 3.128e-42
Identity = 114/330 (34.55%), Postives = 172/330 (52.12%), Query Frame = 0
Query:    1 MGSDLDNYCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLAQ----------------PGCDPIQPTPDELPAAASPLPNIKLE--EPPSSPANPLASTSDFQSVKVEPLIMDEAM--------EQIVEGNPEDFLYETVEETDTGSEDPLHRNDET-TLSAAGSPSWT-------NGEVVRL--ADGRGGQ--CLRCGKGFALFVTAVRHFKLSHFESENLPCPYCQSVMRTKSYLKDHLRRKH 292
            MGS  + +CL+WNDF++++S +   LR++ DFFD+ L C+  Q   +QAHKVIL+ACS FF+ ILK+++      H  P +YL+GV F+ + A+L+FMYQGEV+V Q DL++FLAVAE+L+VKGL Q                P  D   P P + P  ++   N K++  EP      P     + +S  V+P +   A         E +VE   +   Y+   E D G +D +  +  T T SA G+             ++ RL  A+G G    C  C + +    T +RH   +H +S  + CP C  + +T+  LK H+ R H
Sbjct:    1 MGSS-EKFCLRWNDFESNISISFRELRDDKDFFDITLACEDDQ---VQAHKVILSACSPFFRSILKRNQ------HQHPLLYLKGVKFSELQAVLNFMYQGEVNVAQEDLNSFLAVAEELKVKGLTQSNTKSSPQPKHRSRDPPENDSAPPPPSKRPRQSNSAVNTKVKSYEPEVQEMIP-----NVKSEPVQPEVQSMAAVEPYQAGGEPLVEYGEDYGDYDGGYEGDAGYDDSMMDSTMTGTPSADGNKDLNIDLDEQIQEKMSRLMGANGEGMLWCCDVCNRKYK-DKTKMRHHIETHLDS-FVSCPLCNQLCKTRRTLKTHIGRSH 313          
BLAST of longitudinals lacking vs. nr
Match: gi|1325315205|ref|XP_023339300.1| (protein abrupt-like isoform X25 [Eurytemora affinis])

HSP 1 Score: 156.762 bits (395), Expect = 5.738e-42
Identity = 113/328 (34.45%), Postives = 156/328 (47.56%), Query Frame = 0
Query:    1 MGSDLDNYCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLAQPGCDPIQPTPDELPAAASPLPNIKLEEPPSSPAN---------------------PLAST-SDFQSVKVEPLIMDEAM-----------EQIVEGNPEDFLYETVEET-DTGSEDPLHRNDETTLSAAGSPSW-TNGEVVRLADGRGGQCLRCGKGFALFVTAVRHFKLSHFESENLPCPYCQSVMRTKSYLKDHLRRKHK 293
            MG++   +CLKWNDF++++S A   +R+E DFFDV L CD  Q   LQAHKVIL+ACS FF++ILK+      + H  P +YL+GV ++ + ++L+FMY GEV+V Q +L++FLAVAE+L+VKGL Q        T  E  A  SP    +  E  +                         P+ S   D  SV  +P   + A+           E   E N ED  YE  +++ D+   DP    D           W  N +   +  G    C  CGK F     A  H +  HF S+   C  C   M+TK  L  H  R HK
Sbjct:    1 MGTE--KFCLKWNDFESNISLAFREIRDEKDFFDVTLACDDDQ---LQAHKVILSACSPFFRNILKR------NPHQHPLLYLKGVKYSDLQSVLNFMYHGEVNVAQDELNSFLAVAEELRVKGLTQNNSG---STKKENSAPKSPPSKSRASESAAPAPKRPRPNPPAPAFIQDDDIQEVVPVKSEPRDIASVPSDPYSNNTAIATSNQHQLQTEEDAYEDNYED--YEGYDQSYDSTMMDPNMTGDGNKGMLVPPSDWEANIDNFIVKSGSIYTCSECGKQFQGKSAARNHLESIHFPSQGHNCDLCGKFMKTKHALYTHKSRYHK 312          
BLAST of longitudinals lacking vs. nr
Match: gi|1325312181|ref|XP_023337725.1| (protein tramtrack, beta isoform-like isoform X2 [Eurytemora affinis])

HSP 1 Score: 156.762 bits (395), Expect = 9.907e-42
Identity = 108/325 (33.23%), Postives = 163/325 (50.15%), Query Frame = 0
Query:    1 MGSDLDNYCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLAQ----------------PGCDPIQPTPDELPAAASPLPNIKLE--EPPSSPANPLASTSDFQSVKVEPLIMDEAM--------EQIVEGNPEDFLYETVEETDTGSEDPLHRNDET-TLSAAGSPSWTNGEVVRLADGRGGQ------CLRCGKGFALFVTAVRHFKLSHFESENLPCPYCQSVMRTKSYLKDHLRRKH 292
            MGS  + +CL+WNDF++++S +   LR++ DFFD+ L C+  Q   +QAHKVIL+ACS FF+ ILK+++      H  P +YL+GV F+ + A+L+FMYQGEV+V Q DL++FLAVAE+L+VKGL Q                P  D   P P + P  ++   N K++  EP      P     + +S  V+P +   A         E +VE   +   Y+   E D G +D +  +  T T SA G+    +      A  R         C+ C            H + +H  + +  CP C  V R++  +K H+ R H
Sbjct:    1 MGSS-EKFCLRWNDFESNISISFRELRDDKDFFDITLACEDDQ---VQAHKVILSACSPFFRSILKRNQ------HQHPLLYLKGVKFSELQAVLNFMYQGEVNVAQEDLNSFLAVAEELKVKGLTQSNTKSSPQPKHRSRDPPENDSAPPPPSKRPRQSNSAVNTKVKSYEPEVQEMIP-----NVKSEPVQPEVQSMAAVEPYQAGGEPLVEYGEDYGDYDGGYEGDAGYDDSMMDSTMTGTPSADGNKELDDMISTMSAKDRDESGAVSWVCIVCQYKNPSLTNLTNHIERNHLNA-SYRCPKCSKVFRSRHAIKTHIYRLH 309          
BLAST of longitudinals lacking vs. nr
Match: gi|1325255524|ref|XP_023320003.1| (protein abrupt-like isoform X30 [Eurytemora affinis])

HSP 1 Score: 156.377 bits (394), Expect = 1.404e-41
Identity = 109/342 (31.87%), Postives = 167/342 (48.83%), Query Frame = 0
Query:    1 MGSDLDNYCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLAQPGCDPIQPTPDE-------------------------LPAA-ASPLPN---------------IKLEEPPSSPANP-----LASTSDFQ-SVKVEPLIMDEAMEQIVEGNPEDF-LYETVEETDTGSEDPLHRNDETTLSAAGSPSWTNGEVVRLA-DGRGGQCLRCGKGFALFVTAVRHFKLSHFESENLPCPYCQSVMRTKSYLKDHLRRKHK 293
            MG+  + +CL+WNDF+ ++S A   LREE DFFDV L CD S    +QAHKVIL+ACS FF+++L+++       H  P +YL+GV +  M ++L+FMY GEV+V Q +L++FLAVAEDL+VKGL Q   +    T  E                         +P+A ++P P                + ++  P     P      +S +D+Q S  VEP     A+E   + +  D+  YE   +  +G  DP +        A G+  +      ++A +G   QCL CGK   +      H +  H +     CPYC    ++++ L+ H  R+H 
Sbjct:    1 MGTS-EKFCLRWNDFETNISVAFRELREEKDFFDVTLACDDSS--QIQAHKVILSACSPFFRNVLRKN------PHQHPLLYLKGVKYKEMLSVLNFMYMGEVNVAQEELNSFLAVAEDLRVKGLTQNNAESGDKTKAESKSNSNRNREPPEREPGPPPKRARPVPSAPSTPAPTNNRPSSYEDDDIQEVVPVKSEPRDVTTPSTAMTTSSNNDYQDSSLVEPGQGQVALEDSYQDDSYDYGNYEEGYDDGSGMIDP-NTGMPIAAGADGNKDYDTYIKSKMAKNGVDWQCLECGKLSRVKTNIYEHIESIHTDFPGYLCPYCNRTCKSRNALRAHKFREHN 332          
BLAST of longitudinals lacking vs. nr
Match: gi|1325312191|ref|XP_023337730.1| (protein tramtrack, beta isoform-like isoform X7 [Eurytemora affinis])

HSP 1 Score: 155.221 bits (391), Expect = 1.840e-41
Identity = 115/330 (34.85%), Postives = 170/330 (51.52%), Query Frame = 0
Query:    1 MGSDLDNYCLKWNDFQAHVSGACHTLREEADFFDVVLGCDQSQGRTLQAHKVILAACSSFFKDILKQHEASTVSSHTSPFIYLRGVPFTHMAAILDFMYQGEVSVRQTDLSAFLAVAEDLQVKGLAQ----------------PGCDPIQPTPDELPAAASPLPNIKLE--EPPSSPANPLASTSDFQSVKVEPLIMDEAM--------EQIVEGNPEDFLYETVEETDTGSEDPLHRNDET-TLSAAGSP---SWTNGEVV-RLA-DGRGG-QCLRCGKGFALFVTAVRHFKLSHFESENLPCPYCQSVMRTKSYLKDHL----RRKHK 293
            MGS  + +CL+WNDF++++S +   LR++ DFFD+ L C+  Q   +QAHKVIL+ACS FF+ ILK+++      H  P +YL+GV F+ + A+L+FMYQGEV+V Q DL++FLAVAE+L+VKGL Q                P  D   P P + P  ++   N K++  EP      P     + +S  V+P +   A         E +VE   +   Y+   E D G +D +  +  T T SA G+    S  N  ++ RL  DG     CL C K        +R+   +H       CP+C    +T+  L+ H+    R KHK
Sbjct:    1 MGSS-EKFCLRWNDFESNISISFRELRDDKDFFDITLACEDDQ---VQAHKVILSACSPFFRSILKRNQ------HQHPLLYLKGVKFSELQAVLNFMYQGEVNVAQEDLNSFLAVAEELKVKGLTQSNTKSSPQPKHRSRDPPENDSAPPPPSKRPRQSNSAVNTKVKSYEPEVQEMIP-----NVKSEPVQPEVQSMAAVEPYQAGGEPLVEYGEDYGDYDGGYEGDAGYDDSMMDSTMTGTPSADGNKDLDSLVNQNMITRLGLDGIAEFVCLFCHKA-GRHSANIRNHVETHIPGFTHQCPHCSKTRKTRESLRQHIMTVHRDKHK 314          
The following BLAST results are available for this feature:
BLAST of longitudinals lacking vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25
Match NameE-valueIdentityDescription
EMLSAG000000072284.113e-2427.59supercontig:LSalAtl2s:LSalAtl2s404:613982:614914:-... [more]
EMLSAG000000024554.995e-2442.50supercontig:LSalAtl2s:LSalAtl2s1471:52173:56863:1 ... [more]
EMLSAG000000092381.962e-2328.21supercontig:LSalAtl2s:LSalAtl2s588:466746:467909:-... [more]
EMLSAG000000031891.374e-2225.45supercontig:LSalAtl2s:LSalAtl2s176:671224:672666:1... [more]
EMLSAG000000074811.411e-2237.01supercontig:LSalAtl2s:LSalAtl2s42:537429:544881:1 ... [more]

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BLAST of longitudinals lacking vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|73621174|sp|Q7KRI2.1|LOLAL_DROME2.365e-2846.46RecName: Full=Longitudinals lacking protein-like; ... [more]
gi|13124701|sp|Q01295.2|BRC1_DROME1.171e-2541.94RecName: Full=Broad-complex core protein isoforms ... [more]
gi|13123979|sp|Q24206.2|BRC4_DROME1.382e-2541.94RecName: Full=Broad-complex core protein isoform 6[more]
gi|33112291|sp|Q8IN81.1|FRU_DROME8.298e-2432.04RecName: Full=Sex determination protein fruitless[more]
gi|47117851|sp|P42282.3|TTKA_DROME1.048e-2239.23RecName: Full=Protein tramtrack, alpha isoform; Al... [more]
gi|27923726|sp|Q24174.2|ABRU_DROME1.253e-2242.86RecName: Full=Protein abrupt; AltName: Full=Protei... [more]
gi|20455517|sp|P17789.2|TTKB_DROME1.285e-2239.23RecName: Full=Protein tramtrack, beta isoform; Alt... [more]
gi|29428068|sp|Q9W0K7.2|BAB1_DROME6.056e-2238.33RecName: Full=Protein bric-a-brac 1[more]
gi|29428067|sp|Q9W0K4.2|BAB2_DROME5.821e-2033.33RecName: Full=Protein bric-a-brac 2[more]
gi|73920873|sp|Q9V5M6.4|LOLA5_DROME2.966e-1936.59RecName: Full=Longitudinals lacking protein, isofo... [more]

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BLAST of longitudinals lacking vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1325312179|ref|XP_023337724.1|3.128e-4234.55protein tramtrack, beta isoform-like isoform X1 [E... [more]
gi|1325315205|ref|XP_023339300.1|5.738e-4234.45protein abrupt-like isoform X25 [Eurytemora affini... [more]
gi|1325312181|ref|XP_023337725.1|9.907e-4233.23protein tramtrack, beta isoform-like isoform X2 [E... [more]
gi|1325255524|ref|XP_023320003.1|1.404e-4131.87protein abrupt-like isoform X30 [Eurytemora affini... [more]
gi|1325312191|ref|XP_023337730.1|1.840e-4134.85protein tramtrack, beta isoform-like isoform X7 [E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold691_size110934supercontigscaffold691_size110934:19119..20363 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold691_size110934-snap-gene-0.34-mRNA-1maker-scaffold691_size110934-snap-gene-0.34-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold691_size110934:19119..20363-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold691_size110934-snap-gene-0.34 ID=maker-scaffold691_size110934-snap-gene-0.34|Name=longitudinals lacking|organism=Tigriopus kingsejongensis|type=gene|length=1245bp|location=Sequence derived from alignment at scaffold691_size110934:19119..20363- (Tigriopus kingsejongensis)
ATGGGGTCGGATTTGGACAATTATTGCTTGAAGTGGAACGACTTCCAAGC CCACGTGAGTGGGGCGTGCCATACGCTAAGGGAAGAGGCGGACTTTTTCG ACGTGGTCCTGGGCTGCGATCAGAGCCAAGGCCGCACCCTCCAAGCCCAC AAGGTCATCCTGGCCGCGTGCTCGAGCTTTTTCAAGGACATCCTCAAGCA GCACGAGGCCTCGACGGTTTCGTCCCACACCAGCCCTTTCATCTACTTGC GCGGTGTGCCTTTCACTCACATGGCCGCTATCCTGGATTTCATGTACCAG GGCGAGGTGAGCGTTCGCCAGACGGACCTGAGCGCCTTCTTGGCCGTGGC CGAAGACCTTCAAGTCAAGGGCTTAGCCCAGCCCGGCTGCGATCCGATCC AGCCAACCCCAGACGAGCTTCCGGCGGCGGCTAGTCCGCTACCCAATATC AAACTGGAGGAGCCACCTAGCTCGCCCGCGAATCCACTAGCCTCCACCTC CGACTTTCAGAGTGTCAAGGTTGAGCCCTTGATCATGGATGAGGCCATGG AGCAGATTGTCGAAGGCAATCCCGAAGATTTTCTGTACGAAACTGTCGAA GAGACAGACACTGGCTCCGAGGACCCTTTACATCGGAACGATGAAACGAC ACTGAGTGCTGCAGGTGAGATATTGAGCCTAGCCCAAGTTGGATATTTAA GCTGGGTCGAAATGGCGAACATCCTAGTCTGGACAAAACGCCACTTCGAG GCCGCTTCTTTCAATGAGTGTTGAGGTCATTCTTTCTCGGGTCTCTCTGT TTCAGGTTCACCCTCTTGGACCAATGGTGAAGTGGTTCGTCTCGCTGACG GACGCGGGGGCCAATGTTTGAGGTGTGGCAAGGGCTTCGCCCTGTTTGTG ACGGCGGTTAGGCATTTCAAACTTAGTCATTTCGAATCCGAAAACTTGCC ATGTCCTTACTGTCAGTCCGTAATGAGGACCAAGAGCTATCTCAAAGACC ATTTGCGGAGGAAGCACAAAGTTTATCAAGGTCCATTTAAAGGGCCACCT CCTACCTAATTGACGTTAATGTGTGCTCCTACCCTCAATACCGAGGGTAA GAGATATGTTCTTATCACCCATGGGCATAAAATTTGTATGTCACCGACTT GTTCGAAGTTAAAGGCTTTTGAGGAGTACTTTGCCCAATGATTCCTGCCA GCCTCATGAAAATCGAAGATCACACTGACATTGAAAGGAATAAAC
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Synonyms
The feature 'longitudinals lacking' has the following synonyms
Synonym
Tk06100
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