GA20104, maker-scaffold71_size417697-snap-gene-2.16 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of GA20104 vs. L. salmonis genes
Match: EMLSAG00000010008 (supercontig:LSalAtl2s:LSalAtl2s658:26144:68191:1 gene:EMLSAG00000010008 transcript:EMLSAT00000010008 description:"maker-LSalAtl2s658-augustus-gene-0.4") HSP 1 Score: 79.7221 bits (195), Expect = 2.364e-17 Identity = 49/165 (29.70%), Postives = 86/165 (52.12%), Query Frame = 0
Query: 55 EIPKCIPRDTLVSLPPPEDETILEFFPSQVMVPRCSGGCHLSGNHQHKCLPVPKSRYQKPIQVIAKRGSQTFNCSTIELEAHRD-CRCGCEIDASNCSADQVFVQTLCQCQCRDFDEQNKCQRTND--KFWDRNSCQCLCLPSVTKECSTGYNFDSIDTCINGLV 216
E +C+ RDT+V P P+D + E P V+VPRC+G C + C +PK + + V + + C+ +++E HR CRC C D +C A Q F + C+C+C++ K ++D + W+ ++C C+C + C+ G+ F + TC+ ++
Sbjct: 89 EAHRCLVRDTVVRXPLPDDLIVSEAMPEFVVVPRCTGLCL----DRSGCSCIPKKKRHTKVDVXINVNNSSQVCAEVKIEEHRGPCRCKC--DLKDCHAYQEFDELTCKCRCKEKFGSLKSSCSSDILRHWEEDACDCICDRVI---CADGF-FQDLKTCMCKMI 243
BLAST of GA20104 vs. L. salmonis genes
Match: EMLSAG00000012376 (supercontig:LSalAtl2s:LSalAtl2s906:63861:86606:-1 gene:EMLSAG00000012376 transcript:EMLSAT00000012376 description:"maker-LSalAtl2s906-augustus-gene-0.12") HSP 1 Score: 79.337 bits (194), Expect = 2.481e-17 Identity = 48/167 (28.74%), Postives = 76/167 (45.51%), Query Frame = 0
Query: 44 CSTLDKERIWNEIPKCIPRDTLVSLPPPEDETILEFFPSQVMVPRCSGGCHLSGNHQHKCLPVPKSRYQKPIQ----VIAKRGSQTFNCSTIELEAHRDCRCGCEIDASNCSADQVFVQTLCQCQCRDFDEQNKCQRTNDKFWDRNSCQCLCLPSVTKECSTGYNFD 206
C++ + N C PR ++ LP P + PS V+V RC G CH + + CLP + P+ I + CS ++++ H +C C C+I +C+A QV+ + LC CQC+D E C + + WD + C+P T E G +
Sbjct: 39 CTSPHERGAMNSKASCRPRPRVIRLPWPNSTEVNHMIPSHVIVDRCDGSCH---HRKQSCLPRKVIKKSFPVMFAHCTIHDKTCGKI-CSQVQVDEHLECGCECKIKRHHCNAKQVYRKELCSCQCKDLSEVQACYNSG-RVWDPSK----CIPEETNELEAGERIE 196
BLAST of GA20104 vs. L. salmonis genes
Match: EMLSAG00000000061 (supercontig:LSalAtl2s:LSalAtl2s100:182217:183023:-1 gene:EMLSAG00000000061 transcript:EMLSAT00000000061 description:"augustus_masked-LSalAtl2s100-processed-gene-1.11") HSP 1 Score: 74.3294 bits (181), Expect = 6.244e-16 Identity = 48/154 (31.17%), Postives = 73/154 (47.40%), Query Frame = 0
Query: 65 LVSLPPPEDETILEFFPSQVMVPRCSGGCHLSGNHQHKCLPVPKSRYQKPIQVIAKRGSQ-TFN--CSTIELEAHRDCRCGCEIDASN--CSADQ--VFVQTLCQCQCRDFDEQNKCQRTNDKFWDRNSCQCLCLPSVTKECSTGYNFDSIDTC 211
L +LP D I PS + RCSG C +C+P + + R SQ +N C ++ +E H DC C C D + C+AD + + C+C+C D + +C R+ K W+ +C C+C S + C TG+ FD +TC
Sbjct: 53 LTNLPALNDNRISRVIPSYALTDRCSGACD-----TLECVPTKIENITVHVMAVMTRYSQGEWNTVCVSLRIEKHLDCSCSCPDDEEHRSCNADPNVYYDASSCKCKCNDRIARTECLRSG-KLWNERNCGCICPQSSWRPCGTGFIFDYRETC 200
BLAST of GA20104 vs. L. salmonis genes
Match: EMLSAG00000006508 (supercontig:LSalAtl2s:LSalAtl2s356:707060:708449:1 gene:EMLSAG00000006508 transcript:EMLSAT00000006508 description:"maker-LSalAtl2s356-augustus-gene-6.30") HSP 1 Score: 73.9442 bits (180), Expect = 6.448e-16 Identity = 52/177 (29.38%), Postives = 83/177 (46.89%), Query Frame = 0
Query: 42 EICSTLDKERIWNEIPKCIPRDTLVSLPPPEDETILEFFPSQVMVPRCSGGCHLSG-------NHQHKCLPVPKSRYQKPIQVIAKRGSQTFNCSTIELEAHRDCRCGCEIDASNCSAD----QVFVQTLCQCQCRDFDEQNKCQRTNDKFWDRNSCQCLCL-PSVTKECSTGYNFD 206
E CS +E I + I C P +T++ L P ++T P+ V V RC G C + N L P+S G+ + CS++ ++ H C CG I A C+ +V++ C+C CRD ++ C + + FW+ +C+C+C P+ C TGY+FD
Sbjct: 23 ETCSAKQQEMILSRILSCRPIETVIPLDYPFNDTYSLMKPTHVSVKRCQGSCFSNNCIAKQIINRNVDVLYFPRSS--------NPDGTISPICSSVIVQDHITCGCGXSIXADECTDTGMDIRVYLPGECRCACRDVSKRGNCLKQGN-FWNFQTCECMCQNPNSWPICPTGYSFD 190
BLAST of GA20104 vs. L. salmonis genes
Match: EMLSAG00000000944 (supercontig:LSalAtl2s:LSalAtl2s1166:164075:170496:-1 gene:EMLSAG00000000944 transcript:EMLSAT00000000944 description:"maker-LSalAtl2s1166-augustus-gene-1.26") HSP 1 Score: 60.077 bits (144), Expect = 1.979e-10 Identity = 39/132 (29.55%), Postives = 67/132 (50.76%), Query Frame = 0
Query: 79 FFPSQVMVPRCSGGCHLSGNHQHKCLPVPKSRYQKPIQVIAKRGSQTFNCS---TIELEAHRDCRCGCEIDASNCSADQVFVQTLCQCQCRDFD-EQNKCQRTNDKFWDRNSCQCLCLPSVTKECSTGYNFD 206
++P+ V V RC+G C H L +++ I + R +Q N I + H+ C C C + +C ++QV+ ++ C+C C+ D E+ +C ++ W+ + C C CL V EC+TG +FD
Sbjct: 108 YYPTCVRVERCNGCC------SHNLLSC-QAKESGTIDITIMRANQRTNSVEYLKIPVIQHKTCSCDCIVKEEDCLSNQVYKRSDCRCACKATDTEKLECISQGNRIWNPHKCFCQCL--VVFECTTGQSFD 230
BLAST of GA20104 vs. nr
Match: gi|1036839615|ref|XP_017068375.1| (PREDICTED: uncharacterized protein LOC108106038 [Drosophila eugracilis] >gi|1036839632|ref|XP_017068376.1| PREDICTED: uncharacterized protein LOC108106038 [Drosophila eugracilis]) HSP 1 Score: 85.8853 bits (211), Expect = 1.029e-15 Identity = 53/167 (31.74%), Postives = 88/167 (52.69%), Query Frame = 0
Query: 46 TLDKERIWNEIP-KCIPRDTLVSL-PPPEDETILEFFPSQVMVPRCSGGCHLSGNHQHKCLPVPKSRYQ---KPIQVIAKRGSQTFNCSTIELEAHRDCRCGCEIDASNCSADQVFVQTLCQCQCRDFDEQNKC-QRTNDKFWDRNSCQCLCLPSVTKECSTGYNFD 206
++ K + N +P C P+ T+V L PP EDE + P+ + RC+G C G+ C P + Q + + A G + F + I +E H CRC C I A +C+ Q + + LC+C+C + D ++KC ++ +K+W ++C C+C + C+TG FD
Sbjct: 126 SIMKSTVRNAMPASCSPQPTIVELKPPAEDEANYYYIPACTRISRCNGCC---GSTLISCQPTEVEQVQLRVRKVDRAATSGRRPF--TIITVEQHTQCRCDCRIKAEDCNVYQSYRKDLCRCECHNTDARDKCLEQAENKYWVDDNCTCVC--RYNQSCTTGTVFD 285
BLAST of GA20104 vs. nr
Match: gi|987900232|ref|XP_015431324.1| (PREDICTED: balbiani ring protein 3-like [Dufourea novaeangliae]) HSP 1 Score: 82.4185 bits (202), Expect = 1.096e-15 Identity = 48/148 (32.43%), Postives = 74/148 (50.00%), Query Frame = 0
Query: 58 KCIPRDTLVSLPPPEDETILEFFPSQVMVPRCSGGCHLSGNHQHKCLPVPKSRYQKPIQVIAKRGSQTFNCSTIELEAHRDCRCGCEIDASNCSADQVFVQTLCQCQCRDFDEQNKCQRTNDKFWDRNSCQCLCLPSVTKECSTGYNF 205
KC+PR T+V+L + E +FPS V V RC G C GN+ C+P+ R ++ C + +E H CRC C + +C+ Q + + C C C +F EQ +C+R + W+ C+C C + +ECSTG +
Sbjct: 5 KCMPRVTMVNL---DQEPGYMYFPSMVTVKRCEGFC---GNNL-SCMPIDTHRKAILVKKSGIFKVNDMTCHKVLVEEHTKCRCRCNVMKHHCNRYQEYSEETCSCMCMNFSEQAECKRLKNMVWNSEKCKCTC-STPEEECSTGLEW 144
BLAST of GA20104 vs. nr
Match: gi|987900278|ref|XP_015431593.1| (PREDICTED: uncharacterized protein LOC107187906 [Dufourea novaeangliae]) HSP 1 Score: 84.3445 bits (207), Expect = 2.059e-15 Identity = 68/213 (31.92%), Postives = 100/213 (46.95%), Query Frame = 0
Query: 3 FAMAVSTIFLVNAFMVLQHPELRATDGETLPNSTGFQADEICSTLDKERIWNEIP-KCIPRDTLVSLPPPEDETILEFFPSQVMVPRCSGGCHLSGNHQHKCLPVPKSRYQKPIQVIAKR--GSQTFNCSTIELEAHRDCRCGCEIDASNCSADQVFVQTLCQCQCRDFDEQNKCQRTND-KFWDRNSCQCLCLPSVTKECSTGYNFDSIDTC 211
A ++T+ V+ F L H + R D ++ ++ I T ++ IP KC+P VSL D + + ++PS V RC G C + C PV + V++ G + + LE H C C C I A +C+ Q +++ C+C C++ DE KC R ND K WD C CLC +ECSTGY FD +TC
Sbjct: 49 IAKTINTMNSVDEF--LNHVKNRPPDSISISLTS-----RIGDTEERSNAERPIPAKCMPELQPVSLKLENDPSTI-YYPSCTRVKRCGGCC---SHALLSCQPVASEFRNFEVLVVSVETDGLSYKSKQIVPLEEHTKCACDCRIKAEHCNVKQTYLKEECRCACKNVDEAEKCIRNNDTKTWDPERCTCLCRDE--QECSTGYYFDQ-NTC 247
BLAST of GA20104 vs. nr
Match: gi|1036693010|ref|XP_017009891.1| (PREDICTED: vascular endothelial growth factor C [Drosophila takahashii]) HSP 1 Score: 84.7297 bits (208), Expect = 2.214e-15 Identity = 52/167 (31.14%), Postives = 86/167 (51.50%), Query Frame = 0
Query: 46 TLDKERIWNEIP-KCIPRDTLVSL-PPPEDETILEFFPSQVMVPRCSGGCHLSGNHQHKCLPVPKSRYQ---KPIQVIAKRGSQTFNCSTIELEAHRDCRCGCEIDASNCSADQVFVQTLCQCQCRDFDEQNKC-QRTNDKFWDRNSCQCLCLPSVTKECSTGYNFD 206
++ K + N P C P+ T+V L PP EDE + P+ + RC+G C G+ C P + Q + + A G + F + I +E H CRC C A +C+ Q + + LC+C+C + D ++KC ++ +K+W ++C C+C + C+TG FD
Sbjct: 127 SISKSTVRNATPASCSPQPTIVELKPPAEDEANYYYMPACTRISRCNGCC---GSTLISCQPTEVEQVQLRVRKVDRAATSGRRPF--TIITVEQHTQCRCDCRTKAEDCNVYQSYRKDLCRCECHNTDARDKCLEQAENKYWVDDNCTCVC--RYNQSCTTGTVFD 286
BLAST of GA20104 vs. nr
Match: gi|194204753|gb|EDX18329.1| (GD17412 [Drosophila simulans]) HSP 1 Score: 83.1889 bits (204), Expect = 2.295e-15 Identity = 52/164 (31.71%), Postives = 84/164 (51.22%), Query Frame = 0
Query: 49 KERIWNEIP-KCIPRDTLVSL-PPPEDETILEFFPSQVMVPRCSGGCHLSGNHQHKCLPVPKSRYQ---KPIQVIAKRGSQTFNCSTIELEAHRDCRCGCEIDASNCSADQVFVQTLCQCQCRDFDEQNKC-QRTNDKFWDRNSCQCLCLPSVTKECSTGYNFD 206
K + N P C P+ T+V L PP EDE + P+ + RC+G C G+ C P + Q + + A G + F + I +E H CRC C A +C+ Q + + LC+C+C + D ++KC ++ +K+W ++C C+C + C+TG FD
Sbjct: 47 KSTVRNATPASCSPQPTIVELKPPAEDEANYYYMPACTRISRCNGCC---GSTLISCQPTEVEQVQLRVRKVDRAATSGRRPF--TIITVEQHTQCRCDCRTKAEDCNVYQSYRKDLCRCECHNTDARDKCLEQAENKYWVDDNCTCVC--RYNQSCTTGTVFD 203 The following BLAST results are available for this feature:
BLAST of GA20104 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 5
BLAST of GA20104 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of GA20104 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold71_size417697:192251..211992- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold71_size417697-snap-gene-2.16 ID=maker-scaffold71_size417697-snap-gene-2.16|Name=GA20104|organism=Tigriopus kingsejongensis|type=gene|length=19742bp|location=Sequence derived from alignment at scaffold71_size417697:192251..211992- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'GA20104' has the following synonyms
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