type iv pilus-associated protein, maker-scaffold74_size411160-snap-gene-3.17 (gene) Tigriopus kingsejongensis

Overview
Nametype iv pilus-associated protein
Unique Namemaker-scaffold74_size411160-snap-gene-3.17
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of type iv pilus-associated protein vs. L. salmonis genes
Match: EMLSAG00000007166 (supercontig:LSalAtl2s:LSalAtl2s403:189750:191334:-1 gene:EMLSAG00000007166 transcript:EMLSAT00000007166 description:"maker-LSalAtl2s403-snap-gene-2.29")

HSP 1 Score: 49.6766 bits (117), Expect = 3.651e-8
Identity = 28/92 (30.43%), Postives = 47/92 (51.09%), Query Frame = 0 
Query:   36 QCFVDGECLDSMLIDVEPTNTSSMCLHHCQNTRGCEWFTWYKDTSLCASLSVCLRLNGTYCGDNCVSGEVECPEFYCGVKGKCLGALEGMRL 127
            +C ++ EC +S   + + T     C   C  T+ C W+T+   + LC +L  C  +N   C D C++ ++ECP   C   G+C G   G+R+
Sbjct:   28 RCDLNQECTNSHWKNFKLTEGKEKCQELCSKTKECHWYTYVAHSKLCIALKEC--INFKDCKD-CITSQIECPR--CFKVGRCEGT--GIRV 112
The following BLAST results are available for this feature:
BLAST of type iv pilus-associated protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000071663.651e-830.43supercontig:LSalAtl2s:LSalAtl2s403:189750:191334:-... [more]
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BLAST of type iv pilus-associated protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of type iv pilus-associated protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold74_size411160supercontigscaffold74_size411160:358980..359460 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold74_size411160-snap-gene-3.17-mRNA-1maker-scaffold74_size411160-snap-gene-3.17-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold74_size411160:358980..359460+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold74_size411160-snap-gene-3.17 ID=maker-scaffold74_size411160-snap-gene-3.17|Name=type iv pilus-associated protein|organism=Tigriopus kingsejongensis|type=gene|length=481bp|location=Sequence derived from alignment at scaffold74_size411160:358980..359460+ (Tigriopus kingsejongensis)
CTTCCAACATGAACATCCTTCAACAATCCACCGTGATCTTGGGTGTCCTT
CTGGCCTTGGACCGAGCCTGGAGCGACAAGACCGCACCGACCGTGGTCAA
TGCGGCTGGTCTCCAGTGTTTCGTGGACGGCGAATGCTTGGACTCGATGC
TGATCGACGTCGAACCCACCAACACCTCGTCCATGTGTCTCCACCACTGC
CAGGTATACCCTCTTCAGAGCTGCCCCAGCCCCCTCAGGGTCTGTCTGAT
CCAGGCATTTGCTTTCAGAATACTCGCGGCTGTGAATGGTTCACCTGGTA
CAAGGACACCAGTTTGTGTGCCTCCCTCTCCGTCTGCCTCAGGCTCAATG
GGACCTACTGCGGGGACAACTGCGTCTCCGGCGAGGTCGAGTGTCCCGAG
TTCTACTGCGGAGTCAAGGGCAAGTGTCTGGGAGCTTTGGAGGGTATGCG
TCTGGTGGCCGATGTGGCCGAATGTCGCGCC
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Synonyms
The feature 'type iv pilus-associated protein' has the following synonyms
Synonym
Tk04225
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