upf0414 transmembrane protein c20orf30 homolog isoform 2, maker-scaffold804_size94796-snap-gene-0.23 (gene) Tigriopus kingsejongensis

Overview
Nameupf0414 transmembrane protein c20orf30 homolog isoform 2
Unique Namemaker-scaffold804_size94796-snap-gene-0.23
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of upf0414 transmembrane protein c20orf30 homolog isoform 2 vs. L. salmonis genes
Match: EMLSAG00000009902 (supercontig:LSalAtl2s:LSalAtl2s645:218314:218652:1 gene:EMLSAG00000009902 transcript:EMLSAT00000009902 description:"augustus_masked-LSalAtl2s645-processed-gene-2.1")

HSP 1 Score: 47.7506 bits (112), Expect = 3.647e-8
Identity = 38/123 (30.89%), Postives = 57/123 (46.34%), Query Frame = 0 
Query:   36 RKPASISGNADFDPSQFEPSYVSIQ-IPWKSLILGLFLLACSLICFFMLIQDLSHTLSGGKPELIARKNENGQEEMVEFRS----ERFWSLIILGFISFPPGIYVTFLFLMATLKIPGYTYDD 153
            RKP + S + DF P Q++  YV  + IPWKS+    FL     +C           +SG                +++FR+    +R W LII+G + F PG Y  ++   A +  PGY +DD
Sbjct:   13 RKPKTRSTD-DFVPEQYQ--YVLKESIPWKSIGFATFLFLVGGLC----------IVSG---------------SLIQFRTLEEDDRIWPLIIIGCLMFIPGSYHVYIAFRALIGSPGYNFDD 107
The following BLAST results are available for this feature:
BLAST of upf0414 transmembrane protein c20orf30 homolog isoform 2 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000099023.647e-830.89supercontig:LSalAtl2s:LSalAtl2s645:218314:218652:1... [more]
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BLAST of upf0414 transmembrane protein c20orf30 homolog isoform 2 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of upf0414 transmembrane protein c20orf30 homolog isoform 2 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold804_size94796supercontigscaffold804_size94796:88515..91299 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold804_size94796-snap-gene-0.23-mRNA-1maker-scaffold804_size94796-snap-gene-0.23-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold804_size94796:88515..91299-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold804_size94796-snap-gene-0.23 ID=maker-scaffold804_size94796-snap-gene-0.23|Name=upf0414 transmembrane protein c20orf30 homolog isoform 2|organism=Tigriopus kingsejongensis|type=gene|length=2785bp|location=Sequence derived from alignment at scaffold804_size94796:88515..91299- (Tigriopus kingsejongensis)
AAAAAAAATCGGAAGCACGCCCATTTTTTGGACACTTCTGATATAAAACT
TGGCTTTAAAACCGGTCGGACGGTTTTTGGTCTGCCTCCTTGATGTGGGG
GTGGGTGAAGAGGCCTTGCTCCAATTCTAGACCATTATGATGAAACACGG
GTCGCAAACGTATTTTCTCGACCTCTGAATGGCCTCAACCTTGGCTCCCA
GCTGCCTTTATTCGAGACACTGATGCCAGTTTGGCCTCCGACTCCCCGAA
ATATAGGCAAGCCTGCAGTTGTCGACTAACAAAGGGAACACTCATTCTGA
TCCCAAACACGTTAACAACCTCCGCCTGAATTGTTCCTGGGTGGCCTGGA
TACGTTGGTAAGACTTGCTGTCACTTTCGACTAGGGAATAATCTTAGGCC
AAACTCTCCGACCAGTCTTGAATATCCGCTGTCTGTCTGGGCACCATCCA
TGCCCCGGTATCAAATGTGGGTTCTCTTGGGCTCAGGGCAGCCACAGGCA
TTCATGGTGGCACCTTCGACCCGGTCCGTAGCTAGGTTGGGTTGGGCGGG
CAAGGCCTCGTGCCGTCCATTCGGGCAGGTCCTCATGTCATCCCGATAAG
ATGTTCTCCCCAAGACGCAGACAGACAAAATGTAAGGTGCCTTTCGAAGG
CTGGCTCAAGCTAGCCTGGACCAAGCACTCGTTGATCGCGTTTAGATGCG
TCCACGATCAGAAGGATCGGGTGTTCATGCTGAAGCACATGTGTGAAATG
ATCAAACGGACGAGTTGGAAAGCATGGGCATCCCTTGCCCGCTTTCTGTG
TTTGGGAGTCGTGGTTGCCTTCATACCATGGATCCCGGGACTCGGGATAC
CCGAGTCGACGGCAGCCACAGTGATATTTCCACTCTGGGGTGTTGATCTT
GGTTTGGATCGGGCTTCTACCCATGATCAATGAGCTTTCCAGTGATACAC
CAGACAGTTGCCCGGTTTGTGTTTAACCACTGGGCTCATCATAACCGTGG
GCGGACTCTTTGGCGTGGGTATGTTCGCTCTGATTTTTTATTGCATCATA
TCCGGAGCGCGGAGGCGAAATTTAGACGCCGATTCCGAACAACTTGACGA
GCTTGCAGCGGAACTAAAGGGGAGAGGGCAAGGGCGTGGCTGACTCTCTA
TGACATCGATAGCCTTGATCGGCCTTGATTCTGGGCTCCCCACGATGCCC
CAAAATCGGGCTGATTCAGGATGGGAAGTGATTCGACGTTCAAGTGGTAC
CGTTTTGTTGCCAAAGTATGAACCAGATATTGCCGAGGCTCACTGGATTG
CTTGGTAGGGGTTCCAGCCAAAGTGAGCTTGATCGCTCGGGTAAGGATCG
AGCTCAAGACTTGGAGAAAGTTAGGACACCTAATTTGACCAGTGATGGAC
CCTGCTGGGATGCTGTCCGGATCATATGCCTTGATTTGATAGCGATCAAT
TCCCTTTTTCAGATTCAGTCTCGGTTGTGAAAAAAAAAACACACACTAAA
CGCGGTGGATTTGGGCATTGGGAGCGCAACGAAACTTCCTACAACTACTT
GCATCCAATATGCAGTCGGAACTACGAAAACGACATGGATACGAGCGGGT
CGACGAGGATCGATCTCTTCCTCGAAAACCTGCGTCTATCTCGGGTAACG
CCGATTTCGATCCCTCCCAATTCGAGCCCAGCTATGTCTCCATCCAAATC
CCGTGGAAGTCTTTGATTCTCGGTCTCTTCCTCCTGGCCTGCAGTCTCAT
TTGCTTCTTCATGTTGATCCAAGATCTCTCGCACACCTTAAGTGGGGGCA
AGCCTGAATTGATTGCAAGGAAGAACGAGAACGGTCAAGAGGTAATTCGT
CCATGATCTAGTATGTACCCCCAAGAAACCCGCCATAGCTCAGTGTCAGC
GAGCACTGGCCGGATGGTGGGTGGCCGGGGTTCGTATCCAGGGCTTCGCC
CAGTTAATGAGAGCTAGTGGAATGAAAGTGCCGCTACTGTTGCTTCCCTG
GCGGGATGATATTGGACGGACCTGTGGTAATTCATCGAAGGATGGGTTCT
TCATAAATTTGCAGAGCTAGCTGGCCGACTACCTCGTGAGAGGTTACCTC
AGCTGGGCGTAAATACCGGAGTCCGTACCATACAAACAAAATGGAGCTTG
GCATCTACTCCTAAAAATCTTGCCAACGGATCTTCCCAGATGGCATTTTT
AGATGGATGTACGACTTTGGGGTTCAATCGTCAAAAAGGTGCACACAATT
ACCAAATAGAGTGCTTTATTTGCAGGAGATGGTGGAATTCAGATCGGAAC
GCTTTTGGTCCCTTATCATCCTCGGATTCATCTCGTTTCCACCGGGCATT
TATGTCACGTTTCTCTTTCTGATGGCGACGCTCAAGATTCCCGGATACAC
CTATGACGATGTACCATCTTGAAGAAAAAAATGGCTTTGGTCTTCACGCC
ACTTTTATTATATGATTGGGCACAGTTGACACCTTACAAGGCCCAAGACG
ACACCGGCATTAATCGTTTACACGGCTTGAGGATTAGATTCCTGGGGAGA
GCTGTTGGGCTCTTATTTTAATGATTGATCTCATCTGACCTCGGAGTCTC
GGGGTCAGCTTGGTGCATCTGAGGCTCTTCGATGTCATTGTGGAACGGCA
CTTGCTTCACCAATTTATGTTTGGGATCGGGCGCCACGTGTCCGGACGGC
CAATCATTTCTATTGATTTCCACTGGTTCAACCACGTTGGCACGCTTTCT
AGAATGATTGAAATAAAAACATTGAATACCAAGGA
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Synonyms
The feature 'upf0414 transmembrane protein c20orf30 homolog isoform 2' has the following synonyms
Synonym
Tk06340
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