alcohol dehydrogenase, maker-scaffold82_size396747-snap-gene-2.28 (gene) Tigriopus kingsejongensis

Overview
Namealcohol dehydrogenase
Unique Namemaker-scaffold82_size396747-snap-gene-2.28
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of alcohol dehydrogenase vs. L. salmonis genes
Match: EMLSAG00000012846 (supercontig:LSalAtl2s:LSalAtl2s97:2011459:2012621:-1 gene:EMLSAG00000012846 transcript:EMLSAT00000012846 description:"maker-LSalAtl2s97-augustus-gene-20.27")

HSP 1 Score: 293.508 bits (750), Expect = 1.271e-98
Identity = 153/325 (47.08%), Postives = 206/325 (63.38%), Query Frame = 0 
Query:   44 LLGLVVHGQTASVRSFPSYDYGGKTHEEFLTDAIERSSPGNARLLAELFGGLDLGLAFGDTDAQAVISVGGAATRCQHQSPCYDTKCKLCYDPLLRIHGRCGGASYFTCRGTLPKACLPYSCTA----RTARSNLGT----MDSLEKTAVFVKKFPRYQDPFCLGRVEKAR----------SLKAPLNGTSVENVSHPRD------TEVDDPD-PEWVMPVPDAITPCQGFDVCLDLRCGSSYDPYLGAHVTGGKMTYYDCEVSLPDECKPLRCTDTNVKELFFPNLMRKSNSNGADMSKIFPGNDDSPLMVRNFPPLNEAHKNC 343
            +L L++  +T+  R+ PS+D+G K+ EEFL  AIERSSPGNARLLAELFGGL+LG+  G  + +AVISVGGAATRCQHQSPC+D  C LCYDPLLRIHGRCGGASY+TCRGTLP+ C+P+SCTA    R+AR N  +     D+  ++ VFVK FP+      +G  +K +          S    +N  +      P+D      +++D+P  P W + VP+ +T CQG D+C+DLRCG  YDPYLG H   GKMTY+DC  SL +EC+P+RCTD ++ ++F                ++  G +   LMVR+F P+ +    C
Sbjct:    5 ILYLLLAIKTSLARTIPSFDFGDKSREEFLRSAIERSSPGNARLLAELFGGLELGINLGG-ETKAVISVGGAATRCQHQSPCFDVACGLCYDPLLRIHGRCGGASYYTCRGTLPQYCVPFSCTATPDGRSARQNSESKNDGKDAYGQSKVFVKTFPKGMGAQGVGCRQKQKVEDPGNFEYNSQNQGINARAAPRKGKPKDVSALPKSDLDEPKMPSWALIVPEPVTSCQGDDICVDLRCGRCYDPYLGTHTHCGKMTYFDCATSLHEECQPIRCTDVDIDDIF--------------TDQVSEGKEADTLMVRSFSPMKDTPSKC 314
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BLAST of alcohol dehydrogenase vs. nr
Match: gi|1325253768|ref|XP_023324121.1| (uncharacterized protein LOC111698076 [Eurytemora affinis])

HSP 1 Score: 65.0846 bits (157), Expect = 1.265e-8
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 0 
Query:   95 LDLGLAFGDTDAQAVISVGGAATRCQHQSPCYDTKCKLCYDPLLRIHGRCGGASYFTCRGTLPKACLPYSC 165
            L + +  G   ++ VISV G  + C     C D  C  CYDP+  +HG CG  S+F C   LP+ CLP++C
Sbjct:   73 LAMAVTVGLEFSKPVISVRGPTSNCHFAPVCLDLACGKCYDPMTSLHGDCGSLSFFRCSSLLPQECLPWTC 143
The following BLAST results are available for this feature:
BLAST of alcohol dehydrogenase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000128461.271e-9847.08supercontig:LSalAtl2s:LSalAtl2s97:2011459:2012621:... [more]
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BLAST of alcohol dehydrogenase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of alcohol dehydrogenase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1325253768|ref|XP_023324121.1|1.265e-839.44uncharacterized protein LOC111698076 [Eurytemora a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold82_size396747supercontigscaffold82_size396747:213603..216573 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteP:oxidation-reduction process
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold82_size396747-snap-gene-2.28-mRNA-1maker-scaffold82_size396747-snap-gene-2.28-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold82_size396747:213603..216573+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold82_size396747-snap-gene-2.28 ID=maker-scaffold82_size396747-snap-gene-2.28|Name=alcohol dehydrogenase|organism=Tigriopus kingsejongensis|type=gene|length=2971bp|location=Sequence derived from alignment at scaffold82_size396747:213603..216573+ (Tigriopus kingsejongensis)
TCAGTTGTGGGTCAGCTCTGAAATTGGCAGGAAGTGAGCTGCGAGACTTC
CAATTGAGGGAGTCATCACTTGCTCGTTGGCCAAGGAAAGCTGGGATTGG
TTTCAGATTTGCCAACATGAGTGGAATCATCTTACTCATGGCCGCCCTCT
TGGGCCTGGTCGTCCACGGTCAGACGGCTTCGGTGCGATCCTTCCCCAGC
TACGATTATGGTGAGAGTTTCTCTTGAATGGCCTACTTAAGTGCATGTAA
TCGTACCACTGAACTAATGGATGGAACAAACTCGTCCACTCTGTCATATC
GATGTTTGTTTGGGTTAGACTTGGGTTCGTTTGTTGTTAAATTCACATGC
GACACAATCTTTCTGCCAAAAATTTGATGTACCGAATTTTCGTCAAAGGT
AGGTTGATATTTTAGAAATTTTCCAAAAACCTATTTTGGAATTTGACCCC
GCACAAATAGTGGCCATGTGACCGATGTGAGAGAGCCCATAATCGTTTTT
TAAGTTAGCAAAGGGGGAACAGTATTCTTAAGACAGTGGCGGCATTCAGA
TCATATTTATTAGAGAATGACCAGAGCGTTCACAGTTGTTATTTCCAACT
AATGTATGTTAGGTTGTATCAGTGCTCTCAACATTGGCAAGTCATCCATG
GGGAAACACAGGGCCAACTGATGTTATTAGCAAATGTATTTTGGTCAGTG
TAGAGTCCCTTACAAACCAGTTCCGAGCATTACTTAAGTTGGGGGAACCG
GAAGAGACCCTTCCTCAAGATGTGGTCAGTACCTGTAGGTCCATTACATG
TACCTATCCACAACAAACTGCAGCAGGGTGAAGTTATTAAAAAAACAAGG
ATCTCAAGTTTGAGAAACAAACTGATGACTGATAACTGATGAAAAGTGAG
TGAATGTTTGTTTTATTTCTTTTAAAATTAGGTGATGTTCTACAGTGAAA
AACATAACAGGGATTTTTCAAAAAACTGAACATTTTAAATTGTCAAAGCA
ATTTTCTTATCACCTAAGATCGATCGCCTCTTGGGTGAAAGCCAAAGTCA
CAAATTAGTTATGCTTTTTCTCAACCCGAGTGTTGATCAATCAATCCACA
GTTTCCAGAGCGAGCGTCAATGTATTGTACCACTCTGATGTATGTGTTAT
CATGGTTCGAACCACCTAATCTACATTGGTCCAAATTTATTCCAACCAAG
ATTTCAGTTTGGCCTTGGGGCCGAAATAAAAAAAGGTGCCTCCTGTCTAG
TGCATCCTTGACTTTCATAACTCTCTGGGTAGGTGGCAAGACGCACGAGG
AATTTCTCACCGACGCCATTGAACGCAGCTCTCCCGGCAACGCCCGCTTA
TTGGCCGAGCTCTTCGGTGGACTTGACCTTGGGCTGGCCTTCGGCGACAC
AGATGCTCAAGCCGTCATTTCGGTGGGTGGAGCTGCGACTCGATGTCAGC
ATCAGTCACCGTGCTATGATACGAAATGCAAGCTGTGCTACGATCCCTTG
CTCCGGATCCATGGGCGGTGTGGTGGAGCCAGCTACTTCACTTGTCGGGG
AACTCTGCCCAAGGCCTGTCTCCCTTACTCTTGTACTGCCAGGGTAAGCC
ATCCAATTCGGACTCACTTTAGAATCTTTCTGAGAAAGTCGAGTCCATTC
TTGGAGATGAGTTCTAATCAAAAACACTTCCCAATAATCCCGATCTTAGC
CGAGAGGGATCAAATGTTTGAGCTGCACTTTATCCGTCTCCTAAATTGGA
TTAGACTGATTCGTTGAAAGCTTCCTCCCCGGAATGTCATCCATCCCTTC
TAAAGGGCCTTGAGTCCTCAATCCTCATGTCCCACTTGTTCCACAGACAG
CCCGCTCTAACTTGGGAACGATGGACTCGCTCGAGAAGACTGCAGTTTTT
GTCAAGAAATTCCCAAGATATCAGGATCCCTTTTGTCTGGGCAGAGTGGA
GAAGGCCCGCAGTCTTAAAGGTACAACAGGCTCTATCCCCATTCTTTCTC
TCTGATGATCCAGTTTGAACTCGATCTCGCCCCCAGCCCCTCTTAATGGC
ACCTCGGTGGAGAATGTGTCCCATCCCCGGGACACAGAGGTGGACGATCC
CGATCCTGAATGGGTAATGCCCGTCCCAGATGCCATCACCCCTTGCCAAG
GATTCGACGTCTGCTTGGATCTGAGATGTGGATCCAGCTACGATCCCTAC
TTGGGAGCCCACGTGACGGGCGGAAAGATGACCTACTACGATTGCGAAGT
GAGCTTGCCCGACGAGTGCAAGCCTCTGCGATGCACTGACACCAACGTCA
AAGAGGTAAGCAGTCTGAGATAGTCCGCATATGTATACTACGTACGTAGA
CCAACAAAAACGATTAGATGTAATTGGTATACTATTGTGTTCCTATGCGG
ATCGGAACTAGGGTAGGTCCTGGTCGTTCGCAGGAATTGGAGCTTACTGA
GGGAATTTCTCAGAAGACCGTTTTGGTTGGCAAAAATGGCTCGTTATGCT
CCAAATTAAACATACTCGTCATCTTTTGTTAGCCTTGGGGTAATGAGAAA
AAATGAATCTACTCCTAGTCCATATACGTACGCAATTAAAGCTATACGTA
CATCGATTGAAGCTGTACTAGAGTGGCACTTTGCCCAAATTTGGGTCCAA
TCAATACTTGGGAACAACGCAATATCTGGAGAATATCCACGAGTCACAAG
TTCTAGAAAGGTTTTAAAGACTAACTGGAAAGGTGAGTTCGTTGGAGCAT
TAATGTGACATTCTGACCATTTCAGCTCTTTTTTCCCAATTTAATGAGAA
AAAGTAATTCCAATGGTGCGGATATGAGCAAGATCTTCCCGGGAAATGAC
GATTCGCCGCTGATGGTCAGGAATTTTCCTCCTCTCAATGAGGCGCACAA
AAATTGCGTCTAATGTTTGATATTGAATCAGAGCCGCTGGCCCCTGTAAG
GATCAGGAATAAAATTGTGAC
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Synonyms
The feature 'alcohol dehydrogenase' has the following synonyms
Synonym
Tk06830
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