dead deah box helicase, maker-scaffold8_size885657-snap-gene-7.3 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of dead deah box helicase vs. L. salmonis genes
Match: EMLSAG00000012740 (supercontig:LSalAtl2s:LSalAtl2s967:89676:95604:1 gene:EMLSAG00000012740 transcript:EMLSAT00000012740 description:"augustus_masked-LSalAtl2s967-processed-gene-0.13") HSP 1 Score: 140.198 bits (352), Expect = 2.856e-37 Identity = 103/368 (27.99%), Postives = 185/368 (50.27%), Query Frame = 0 Query: 6 LTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAFTRLYNADIYEDAKKLNT-------ELNYRI---ALAYGGNNYKAQQEVIEA-----GVDIVIGTPGRLIDFNKQ-KLLKLQNIEVLVLDEADRMFD----LGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDE-KLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNH-NAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFI 351 LTN LP+ L+ + S + + TPIQA+S+P+ L+ DV+G A TG+GKT A+L+ + ++ KL T EL+++I AL NY+ + +V + G +++I TP L+ K L L+++E L++DE+D++F+ F + + + + +K+ FSAT++ DVE ++++ +V + K +++ L + S++ K L +LI ++F+ + + + L A +I + +RE + FR G +L+ T++ +RGI + V+ VINYD P Y+HR+GRT RAG G A++F + +L I + + Sbjct: 65 LTNWWDLSGSLPEGLIE-MVSSLYPNPTPIQAQSIPIMLQGRDVLGSAPTGSGKTAAYLLPIL-------VNQEKNKLKTIILCPTRELSHQIHQEALKLIPPNYQTKVQVASSKKSNQGANVLISTPNTLVYLIKDGSSLDLKSLEWLIVDESDKLFEDKGKASFREQLAVVYKACMSSKK---AFFSATLATDVENWCKTNLDNAVSVTIGIRNKACKDVKQSLVYTGSEKGKNYALTNLINDGIKPPVLIFVQDFERADELKEILTKQKKIKAEVIHSHRSLLQREDAIKTFRAGRTWVLICTELMSRGIDVKGVNLVINYDFPPSTVSYIHRVGRTGRAGRPGRAVTFFTDDDKVLLRSIAQIV 421
BLAST of dead deah box helicase vs. L. salmonis genes
Match: EMLSAG00000010227 (supercontig:LSalAtl2s:LSalAtl2s679:403636:405959:-1 gene:EMLSAG00000010227 transcript:EMLSAT00000010227 description:"maker-LSalAtl2s679-augustus-gene-3.17") HSP 1 Score: 137.117 bits (344), Expect = 5.413e-36 Identity = 117/396 (29.55%), Postives = 188/396 (47.47%), Query Frame = 0 Query: 28 NFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAFTRLYNAD------------IYEDAKKLNTELNYRIAL--------------------AYGGNNYKAQQEVIEAGVDIVIGTPGRLIDF--------NKQKLLKL----QNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDK---RIEEKLYF----PASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTL--IAMNHNAGIISGDVAQN-KREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAIAKIT 369 F TPIQA ++P+ L DV +A TG+GKT+AF+I L N+ I ++L ++++ + + + G K ++E G I+I TPGRL D N+ K K+ ++ ++L+LDEADR+ LGF I ++ LP K+R LFSAT + D++EL + +P V V E++ I+ Y+ P + + LL L ++ +VF +T E + L + N + + + R K+ D F+K D+ +LV TDV +RG+ DV++V+ +D P E +VHRIGRTAR+GA G+A+ +LP + +I+ Q +D D + IT Sbjct: 32 KFKKMTPIQAXAIPLFLGLKDVCAEAVTGSGKTLAFVIPILEILLNSSNEESKVHDIGALILSPTRELASQISQVLEVFLSKIPSLNSLLIIGGGGSSSVGETLRKFEKE----GAKIIIATPGRLEDILTGKTESINQLKAEKMARGFKSTKILILDEADRLLRLGFETAINTIISFLP--KQRRTSLFSATQTKDLDELIRAGLRNPVLVKVKEHGKENELSTPIKLTNYYMKCDPPAKKFATLLKFLKTEAAGKKTMVFFSTCACVEYFSTLLERFLKDDNTPVFALHGQKGGTRFKIFDKFKKLDMGVLVCTDVLSRGVDFPDVEWVVQFDAPKTAEAFVHRIGRTARSGAVGNAL-------LLLLPTEDSYIDFIKINQKVDFDKMEVIT 414
BLAST of dead deah box helicase vs. L. salmonis genes
Match: EMLSAG00000000991 (supercontig:LSalAtl2s:LSalAtl2s116:1961290:1963414:1 gene:EMLSAG00000000991 transcript:EMLSAT00000000991 description:"maker-LSalAtl2s116-augustus-gene-19.39") HSP 1 Score: 137.117 bits (344), Expect = 7.013e-36 Identity = 108/384 (28.12%), Postives = 188/384 (48.96%), Query Frame = 0 Query: 6 LTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAFTRLY--NADIYEDAKKLNTELNYRI--ALAYGGNNYKAQQEVIEAGVDIVIGTPGRLID-FNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAK----ERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVE-----------DKRIEEKLY--FPASDEKLPL------LVHLIESTEMQRGIVFINTKHVGER----VAQTLIA---MNHNAGIISGDVAQNKREKLLDDFRKGDIK------ILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIE 348 + QF + ++ +L+ S T +Q+ ++P L DV+ + QTG+GK +A + L I+ D+ RI + +GG K+++ + G++I++ TPGRL+D +K K L L I LV DEADRM DLG+ +D+ ++ + + +R +L SAT++ + +L+ + P V + ST+ D + E L F KL L ++ M++ ++F+ T+ + + Q+L + N + G++ Q +R K+ +DFR+ D +L+ TDVAARG+ + VD+++ Y+ P DYVHRIGRTAR G G ++ F + + L ++E Sbjct: 90 FSQSQFDGHGIHPYIIKNLDSMGISRPTAVQSATIPRILAGKDVLVKXQTGSGKXLAXALPLLHSLQAITPQIHRDSG-----FFARIVPGVLHGGEKRKSEKARLRKGLNILVSTPGRLLDHIHKTKTLDLSKIHYLVFDEADRMLDLGYERDVNDIINAISENSSEEIKRQTILLSATLTQGIRQLSEVSLKHPDYVDITSTDGNSVMAISDDLQVDTAVPENLQQTFIVVPAKLRLITLSSFILWKCGGKSMKKILIFLATQDMVDYHHTLFEQSLYSEEGKNIKFMKLHGNMDQGERTKVFNDFREIDSGVISSGLVLLCTDVAARGLDLPKVDWIVQYNPPISTADYVHRIGRTARIGLKGSSLLFVLPSETGFLHEVE 468
BLAST of dead deah box helicase vs. L. salmonis genes
Match: EMLSAG00000011335 (supercontig:LSalAtl2s:LSalAtl2s781:205091:212596:-1 gene:EMLSAG00000011335 transcript:EMLSAT00000011335 description:"maker-LSalAtl2s781-augustus-gene-2.34") HSP 1 Score: 137.887 bits (346), Expect = 8.432e-36 Identity = 120/400 (30.00%), Postives = 180/400 (45.00%), Query Frame = 0 Query: 4 NHLTNKQFKDFP-----LPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAF-----------------LIAAFTRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLID----FNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQ-----RGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKL--LDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAIAKITI 370 +H +N ++ P L LL E TP+Q ++ L+ + +G A+TG+GKT AF L+ TR I + K L LN ++++ GG + Q + I+I TPGRL D KLLK I LV+DEADR+ + GF + + + +P ER +LF+AT + +++L + V S DK + Y D+ L V+ +E + R + H I N +S + +RE+L L FR KIL+ATDVA+RG+ I V+YVIN+++P +DYVHR+GRTARAG G IS ++ IEE I K+ + I +I + Sbjct: 64 SHQSNHRYFRLPMDILGLKPWLLRQCETIGLKAPTPVQQATVSKILKGANGVGIAKTGSGKTAAFALPILDALSEDPYGVFALVLTPTRELAYQIGDTFKILGKPLNVKVSIIVGGRDMVMQGSELSTSPHILIATPGRLADHLQSITSSKLLK--KIRFLVIDEADRLLEGGFDEQLSQIFTAIPS--ERQTLLFTATHTEALKDL----------IEVNS----DK--QPFFYREGEDDASSLTVNTLEQYYVLTPADFRDAYLVGXDHEMPGGVSQCILYNICFSNVSLHSMKPQRERLQSLSRFRSHLAKILIATDVASRGLDIQQVEYVINHNIPTDAKDYVHRVGRTARAGRXGXXISLLXPHDVLLIQSIEEMISSKLSEFKVSDKNITEIVV 443
BLAST of dead deah box helicase vs. L. salmonis genes
Match: EMLSAG00000005732 (supercontig:LSalAtl2s:LSalAtl2s309:725565:728317:1 gene:EMLSAG00000005732 transcript:EMLSAT00000005732 description:"maker-LSalAtl2s309-augustus-gene-7.79") HSP 1 Score: 135.191 bits (339), Expect = 2.283e-35 Identity = 91/359 (25.35%), Postives = 171/359 (47.63%), Query Frame = 0 Query: 8 NKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAFTRL------YNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDI------------VIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRI------------EEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFA 336 +K F+ F P+L L+ + + +PIQ +LP TL D + Q+++GTGKT+ ++++A + + + +++ + + L GG+ K + G+ + G+PGR+ ++ ++ + ++V +LDEAD++ + F +D+ +++R LP+ + L + SAT +E + +PT+V + +D ++ L D K L+ LI + ++ IVF N + L A ++G Q R L D + +I++ TD++ARGI V++VIN+D+P+ Y+HRIGR R G+ G A++ A Sbjct: 19 DKTFEHFQFQSPILEGLKVNGYQVPSPIQVSALPYTLAGLDXLVQSKSGTGKTLVYVLSALSSIDVESNELQGLLIAPTREIAVQ-GAQTMLEIGGHLSKLKASTFIGGMSVEEDKLKLKKCHMAFGSPGRVKQLIEEGVMNVSQLKVFILDEADKLCEKSFKEDLSWIMRTLPEIHQTLAL--SATFPNSLENTLISKLKNPTHVRLG----QDCQVLLGVNQFVLESPSHGLVKKVVDYKFESLLKLISNVSFEQCIVFCNYSLRARAICDKLNDRGWPAIFLAGMQEQKDRLNSLKDLKTFRCRIVLTTDLSARGIDARHVNFVINFDVPSQGTTYLHRIGRAGRYGSKGIALTIA 370
BLAST of dead deah box helicase vs. SwissProt
Match: gi|189040044|sp|A8GZJ0.1|RHLB_SHEPA (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 416.001 bits (1068), Expect = 4.415e-143 Identity = 201/389 (51.67%), Postives = 265/389 (68.12%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAF------------------------TRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAI 365 MS HL+ ++F DFPL + + +L ++ F CTPIQA SLP+ LE D+ GQAQTGTGKT+AFL+A F TR I +DA L ++ + YGG Y+ Q++V++ GVDI+IGT GR+ID+ +Q ++ + I+ +VLDEADRMFDLGF+KDIRFL RR+PDAK RLNMLFSAT+S V+ELAY+HMN P V +A E K I+E++++P+ +EK+PLL+ L+E ++ IVF NTKH E+V L H AG+++GDV Q KR ++L+ F KGDI ILVATDVAARG+HI DV +V NYDLP+ EDYVHRIGRT RAG G ++SFACE Y+ LP IE +I+H IPV S DSDA+ Sbjct: 1 MSETHLSTQKFADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNHLLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGDIDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYALNLPAIESYIQHSIPVTSYDSDAL 389
BLAST of dead deah box helicase vs. SwissProt
Match: gi|189040042|sp|B0TJ29.1|RHLB_SHEHH (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 413.69 bits (1062), Expect = 3.247e-142 Identity = 200/389 (51.41%), Postives = 266/389 (68.38%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAF------------------------TRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAI 365 MS+ HL+ ++F DFPL + + +L ++ F CTPIQA SLP+ LE D+ GQAQTGTGKT+AFL+A F TR I +DA L ++ + YGG Y+ Q++V++ GVDI+IGT GR+ID+ +Q ++ + I+ +VLDEADRMFDLGF+KDIRFL RR+PDAK RLNMLFSAT+S V+ELAY+HMN P V +A E K I+E++++P+ +EK+PLL+ L+E ++ IVF NTKH E+V L H AG+++GDV Q KR ++L+ F KG+I ILVATDVAARG+HI DV +V NYDLP+ EDYVHRIGRT RAG G ++SFACE Y+ LP IE +I+H IPV S DSDA+ Sbjct: 1 MSDTHLSTQKFADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNHLLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGEIDILVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISVSFACEEYALNLPAIESYIQHSIPVTSYDSDAL 389
BLAST of dead deah box helicase vs. SwissProt
Match: gi|32363280|sp|Q87KH5.1|RHLB_VIBPA (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 413.305 bits (1061), Expect = 4.506e-142 Identity = 206/389 (52.96%), Postives = 260/389 (66.84%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAF------------------------TRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAI 365 M H+T ++F D L + LE+ F +CTPIQA +LPV L D+ GQAQTGTGKT+AFL A F TR I+ DA+ L + ALAYGG +Y Q ++ GVDI+IGT GR+IDF KQ++ L NI+ +VLDEADRMFDLGF+KDIRFL RR+P+ KERLNMLFSAT+SY V+ELA+EHM++P +V V + RI+E+L++P++++K+ LL LIE R IVF NTKH E V L A H G+++GDV Q KREK+L+ F KGD+ ILVATDVAARG+HI V +V NYDLP+ EDYVHRIGRT RAGASGH+ISFACE Y+ LP IEE+IEH IPV D+ A+ Sbjct: 1 MKKTHITEQKFADLGLQPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPEHEGRQPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAKLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPAQKTGHRIQEELFYPSNEDKMALLQTLIEEEWPDRAIVFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIEEYIEHTIPVSEYDASAL 389
BLAST of dead deah box helicase vs. SwissProt
Match: gi|32363416|sp|Q9KV52.1|RHLB_VIBCH (RecName: Full=ATP-dependent RNA helicase RhlB >gi|189040085|sp|A5F3R4.1|RHLB_VIBC3 RecName: Full=ATP-dependent RNA helicase RhlB >gi|254797692|sp|C3LQR1.1|RHLB_VIBCM RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 410.223 bits (1053), Expect = 8.937e-141 Identity = 201/389 (51.67%), Postives = 261/389 (67.10%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAF------------------------TRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAI 365 M H+T +F DF L +++ LE+ F +CTPIQA +LPV L D+ GQAQTGTGKT+AFL A F TR I+ DA+ L + ALAYGG +Y Q +++GVDI+IGT GR+IDF KQ++ L +I+ +VLDEADRMFDLGF+KDIRFL RR+P+ K+RLNMLFSAT+SY V+ELA+EHMN+P +V V + RI+E+L++P+++ K+ LL LIE R I+F NTKH E++ L A NH G+++GDV Q KRE++L+ F +GD+ ILVATDVAARG+HI V +V NYDLP+ EDYVHRIGRT RAGASGH+ISFACE Y+ LP IE +IEH IP D A+ Sbjct: 1 MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIESYIEHAIPTSDYDPSAL 389
BLAST of dead deah box helicase vs. SwissProt
Match: gi|226739551|sp|B8CHZ1.1|RHLB_SHEPW (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 408.683 bits (1049), Expect = 2.745e-140 Identity = 197/389 (50.64%), Postives = 262/389 (67.35%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAF------------------------TRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAI 365 MS HL+ K+F DFPL + + +L + F CTPIQA SLP+ L D+ GQAQTGTGKT+AFL+A F TR I +DA L ++ + YGG Y+AQ++V++ G+DI+IGT GR+ID+ +Q ++ + I+ +VLDEADRMFDLGF+KDIRFL RR+PDAK RLNMLFSAT+S V+ELAY+HMN P V +A E K I+E++++P+ +EK+PLL+ L+E ++ IVF NTKH E+V L H G+++GDV Q KR ++L+ F GDI +LVATDVAARG+HI DV +V NYDLP+ EDYVHRIGRT RAG G ++SFACE Y+ LP IE +I+H IPV S DS+A+ Sbjct: 1 MSETHLSTKKFADFPLHKEVQQALNEVGFEFCTPIQALSLPILLAKKDIAGQAQTGTGKTLAFLVATFNHLLTEAAPTERKINQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYEAQRKVLDKGIDILIGTTGRIIDYVRQGVIDVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRVGLLTGDVPQKKRLRILEQFTSGDIDVLVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYALNLPAIESYIQHSIPVTSYDSEAL 389
BLAST of dead deah box helicase vs. SwissProt
Match: gi|189040086|sp|A7MXT4.1|RHLB_VIBCB (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 406.371 bits (1043), Expect = 2.324e-139 Identity = 201/389 (51.67%), Postives = 259/389 (66.58%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAF------------------------TRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAI 365 M H+T ++F D L + LE+ F +CTPIQA +LPV L D+ GQAQTGTGKT+AFL A F TR I+ DA L + ALAYGG +Y Q ++ GVDI+IGT GR+IDF KQ++ L NI+ +VLDEADRMFDLGF+KDIRFL RR+P+ KERLNMLFSAT+SY V+ELA+EHM++P +V V + RI+E+L++P++++K+ LL LIE R IVF NTKH E + L A H G+++GDV Q KREK+L+ F +G++ +LVATDVAARG+HI V +V N+DLP+ EDYVHRIGRT RAGASGH+ISFACE Y+ LP IEE+IEH IPV D+ A+ Sbjct: 1 MKKTHITEQKFADLGLKPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAAPLIASTGLKAALAYGGESYDKQLAKLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEWPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEVDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINLPPIEEYIEHAIPVSDYDASAL 389
BLAST of dead deah box helicase vs. SwissProt
Match: gi|32363316|sp|Q8DDN6.1|RHLB_VIBVU (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 404.445 bits (1038), Expect = 1.178e-138 Identity = 203/401 (50.62%), Postives = 262/401 (65.34%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAF------------------------TRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAI-----AKITIPS 372 M H+T ++F D L ++ LE+ F CTPIQA +LPV L D+ GQAQTGTGKT+AFL A F TR IY DA+ L + ALAYGG +Y Q ++ GVD++IGT GR+IDF KQ++ L NI+ +VLDEADRMFDLGF+KDIRFL RR+P +ERLNMLFSAT+SY V+ELA+EHM++P +V V + RI+E+L++P++++K+ LL LIE R I+F NTK+ E + L A H G+++GDV Q KREK+L+ F +G + +LVATDVAARG+HI V +V NYDLP+ EDYVHRIGRT RAGASGH+ISFACE Y+ LP IEE+IEH IPV DS A+ A + PS Sbjct: 1 MKKTHITEQKFADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLTKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAPQERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVDLLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINLPAIEEYIEHTIPVSDYDSSALIQDLPAPVRTPS 401
BLAST of dead deah box helicase vs. SwissProt
Match: gi|39931700|sp|Q7MGP7.1|RHLB_VIBVY (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 404.445 bits (1038), Expect = 1.530e-138 Identity = 203/401 (50.62%), Postives = 262/401 (65.34%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAF------------------------TRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAI-----AKITIPS 372 M H+T ++F D L ++ LE+ F CTPIQA +LPV L D+ GQAQTGTGKT+AFL A F TR IY DA+ L + ALAYGG +Y Q ++ GVD++IGT GR+IDF KQ++ L NI+ +VLDEADRMFDLGF+KDIRFL RR+P +ERLNMLFSAT+SY V+ELA+EHM++P +V V + RI+E+L++P++++K+ LL LIE R I+F NTK+ E + L A H G+++GDV Q KREK+L+ F +G + +LVATDVAARG+HI V +V NYDLP+ EDYVHRIGRT RAGASGH+ISFACE Y+ LP IEE+IEH IPV DS A+ A + PS Sbjct: 1 MKKTHITEQKFADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTHAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAPQERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVDLLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINLPAIEEYIEHTIPVSDYDSSALIQDLPAPVRTPS 401
BLAST of dead deah box helicase vs. SwissProt
Match: gi|122300890|sp|Q088J2.1|RHLB_SHEFN (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 404.06 bits (1037), Expect = 2.097e-138 Identity = 196/389 (50.39%), Postives = 260/389 (66.84%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAFTRLYNA------------------------DIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAI 365 MS HL+ K+F DFPL +L +L ++ F CTPIQA SLP+ L D+ GQAQTGTGKT+AFL+A F L N I +DAK L ++ + YGG +Y+ Q+ V++ GVDI+IGT GR+ID+ +Q ++ L +I+ +VLDEADRMFDLGF+KDIRFL RR+PDAK RLNMLFSAT+S V+ELAY+HMN P V + E K I+E++++P+ ++K+ LL+ LIE + IVF NTKH E++ L H G+++GDV Q KR ++L+ F G+I +LVATDVAARG+HI DV +V NYDLP+ EDYVHRIGRT RAG G +ISFACE Y+ LP+IE +I H IPV + D DA+ Sbjct: 1 MSQTHLSTKKFADFPLKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKDAKLLAAHTGLKVGIVYGGESYETQRAVLDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSMEDKMRLLLSLIEEDWPDKAIVFSNTKHSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILEQFTSGEIDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISISFACEEYALNLPEIETYINHSIPVSNYDKDAL 389
BLAST of dead deah box helicase vs. SwissProt
Match: gi|67461243|sp|Q5GUR8.2|RHLB_XANOR (RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 408.683 bits (1049), Expect = 2.442e-138 Identity = 206/393 (52.42%), Postives = 263/393 (66.92%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAFTRLYN----AD--------------------IYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQ-KLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAIAKI 368 MS+ LT+ F F L L+ LE + F+ CTPIQA +LPV L DV GQAQTGTGKT+AFL+A RL N AD I++DA K +L R AL YGG +Y Q+E+++ GVD++I TPGRLID+ KQ K++ L E+ VLDEADRMFDLGF+KDIRFLLRR+P+ R +LFSAT+S+ V ELAYEHMN P + V + + R+ +++YFP+ DEK LL+ L+ +E R +VF+NTK ERVA+TL + G++SGDV Q KRE LL+ F+KG ++ILVATDVAARG+HID V YV NYDLP EDYVHRIGRTAR G G AISFACE Y+ LPDIE +IE KIPV+ + S+ + + Sbjct: 1 MSDKPLTDVTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDDEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVTSELLTPL 393
BLAST of dead deah box helicase vs. nr
Match: gi|1182629457|gb|ORU89400.1| (RNA helicase [Cycloclasticus sp. symbiont of Poecilosclerida sp. M]) HSP 1 Score: 436.417 bits (1121), Expect = 8.610e-149 Identity = 206/390 (52.82%), Postives = 277/390 (71.03%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAF----------------------TRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAIAKI 368 MS+ HLT+ FK L + L+ +E++ F+HCTPIQA++LP+TL++ DV GQAQTGTGKTIAFL+A + TR IY DA + + ++ L+YGG +Y+ Q++ +E GVDI++GTPGR IDF KQK+ L+ EVLV+DEADRMFDLGF+ DIRFLLRRLP+ + RLNMLFSAT+S+ V ELAYEHMNSP + + ++ K+IEE +Y+PA DEK+PLL+ L+ + QR IVFINTKH +R+ + L ++SGDV Q KR+K+L F++G++ +L+ATDVAARG+HI V +V N+DLP EDYVHRIGRTAR+GASG AISFACETY++ LPDIE +I HKIP ++ID+ A ++ Sbjct: 1 MSSTHLTDTTFKSLKLSEALITGMEEAKFTHCTPIQAQTLPLTLQSKDVAGQAQTGTGKTIAFLLATYHHLLTHKRPDNDKGVRALILAPTRELALQIYNDAAIIGKHTDIKVGLSYGGTDYEKQRKTLEDGVDILVGTPGRTIDFFKQKVFNLRTTEVLVMDEADRMFDLGFINDIRFLLRRLPEPEGRLNMLFSATLSFKVTELAYEHMNSPEMIRIEPEQITAKQIEESIYYPADDEKIPLLLQLLNEQKPQRAIVFINTKHSADRLNRYLDGNGFENAVLSGDVPQKKRQKILSQFQEGNLPLLIATDVAARGLHIPAVSHVFNFDLPQDSEDYVHRIGRTARSGASGKAISFACETYAYSLPDIEAYISHKIPFKNIDTAAFPEV 390
BLAST of dead deah box helicase vs. nr
Match: gi|1247321384|gb|PCH84750.1| (ATP-dependent RNA helicase RhlB [Piscirickettsiaceae bacterium]) HSP 1 Score: 431.795 bits (1109), Expect = 5.080e-147 Identity = 206/384 (53.65%), Postives = 272/384 (70.83%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAF-----------------------TRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSID 361 MS+ HLT+ F L L+ L ++ F+HC+PIQ ++LP+TL++ DV GQAQTGTGKTIAFL+A + TR IY DA + +I LAYGG +Y Q++++E GVDI+IGTPGR IDF KQK+ L++ EVLVLDEADRMFDLGF+ DIRFLLRRLP+ +RLNMLFSAT+S+ V ELAYEHMN P V + +V K++EE +Y+PA +EK+PLLV L+ + +R I+FINTKHV +++ +TL + ++ ++SGDV Q KR+ +L F+ G++ IL+ATDVAARG+H+ DV +V N+DLP EDYVHRIGRTAR+GASG AISFACETY++ LPDIE +I HKIP Q+ID Sbjct: 1 MSSTHLTDTPFSSLGLSDELMQGLNEAGFTHCSPIQEQTLPITLQSKDVAGQAQTGTGKTIAFLLATYQCLLMSERSDNSPAAVRALILAPTRELAIQIYNDAAIIGKHTGLKIGLAYGGTDYDKQRKILEDGVDILIGTPGRTIDFFKQKVFNLRHAEVLVLDEADRMFDLGFINDIRFLLRRLPEPDKRLNMLFSATLSFKVTELAYEHMNDPEMVRIEPEQVTAKQVEEHMYYPADNEKMPLLVMLLTELKPKRSIIFINTKHVADKLNRTLEGNDFDSAVLSGDVPQKKRQSILKSFQDGNLPILIATDVAARGLHVPDVSHVFNFDLPQDAEDYVHRIGRTARSGASGTAISFACETYAYSLPDIEAYISHKIPFQNID 384
BLAST of dead deah box helicase vs. nr
Match: gi|1247410953|gb|PCI70223.1| (ATP-dependent RNA helicase RhlB [Piscirickettsiaceae bacterium]) HSP 1 Score: 431.409 bits (1108), Expect = 6.821e-147 Identity = 206/384 (53.65%), Postives = 272/384 (70.83%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAF-----------------------TRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSID 361 MS+ HLT+ F L L+ L ++ F+HC+PIQ ++LP+TL++ DV GQAQTGTGKTIAFL+A + TR IY DA + +I LAYGG +Y Q++++E GVDI+IGTPGR IDF KQK+ L++ EVLVLDEADRMFDLGF+ DIRFLLRRLP+ +RLNMLFSAT+S+ V ELAYEHMN P V + +V K++EE +Y+PA +EK+PLLV L+ + +R I+FINTKHV +++ +TL + ++ ++SGDV Q KR+ +L F+ G++ IL+ATDVAARG+H+ DV +V N+DLP EDYVHRIGRTAR+GASG AISFACETY++ LPDIE +I HKIP Q+ID Sbjct: 1 MSSTHLTDTPFSSLGLSDELMQGLNEAGFTHCSPIQEQTLPITLQSKDVAGQAQTGTGKTIAFLLATYQCLLMSERSDNSPAAVRALILAPTRELAIQIYNDAAIIGKHTGLKIGLAYGGTDYDKQRKILEDGVDILIGTPGRTIDFFKQKVFNLRHAEVLVLDEADRMFDLGFINDIRFLLRRLPEPDKRLNMLFSATLSFKVTELAYEHMNDPEMVRIEPEQVTAKQVEEHMYYPADNEKMPLLVMLLTELKPKRSIIFINTKHVADKLNRTLEGNDFDSAVLSGDVPQKKRQSILKSFQDGNLPILIATDVAARGLHVPDVSHVFNFDLPQDAEDYVHRIGRTARSGASGTAISFACETYAYSLPDIEAYISHKIPFQNID 384
BLAST of dead deah box helicase vs. nr
Match: gi|504819564|ref|WP_015006666.1| (MULTISPECIES: ATP-dependent RNA helicase RhlB [Cycloclasticus] >gi|407257456|gb|AFT67897.1| DEAD/DEAH box helicase domain-containing protein [Cycloclasticus sp. P1] >gi|511531743|gb|EPD13030.1| DEAD/DEAH box helicase [Cycloclasticus sp. PY97M] >gi|528327669|gb|AGS38932.1| Superfamily II DNA and RNA helicase [Cycloclasticus zancles 78-ME] >gi|1109709024|emb|SHI62166.1| ATP-dependent RNA helicase RhlB [Cycloclasticus sp. DSM 27168] >gi|1250097128|gb|ATI02561.1| ATP-dependent RNA helicase RhlB [Cycloclasticus sp. PY97N]) HSP 1 Score: 426.787 bits (1096), Expect = 4.078e-145 Identity = 205/390 (52.56%), Postives = 273/390 (70.00%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAF----------------------TRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAIAKI 368 MS+ HLT+ QF L PL+ L+++NF CTPIQ ++LP++L NDV GQAQTGTGKTIAFL+A + TR I DAK + + ++ LAYGG +Y Q++ IE GVDI+IGTPGR IDF KQK+ L+N EVLVLDEADRMFDLGF+ DIR+LLRRLP + RLN+LFSAT+S+ V ELAYEHMN+P V V ++ K++ E +Y+PA +EK+PLL+HL+ + + +RGI+FINTKH +R+ + L + + ++SGDV Q KR+ +L F+ G + +L+ATDVAARG+HI V +V N+DLP EDYVHRIGRTAR+GASG AISFACETY++ LPDIE +I HKIP ++ID ++ + Sbjct: 1 MSDTHLTDTQFSSLGLTAPLIQGLDEANFIKCTPIQEQTLPISLLGNDVAGQAQTGTGKTIAFLLATYHTLLTKTPADNKKGVRALILAPTRELAIQIANDAKIIGKHTDIKVGLAYGGTDYDKQRKTIEDGVDILIGTPGRTIDFFKQKVFNLRNTEVLVLDEADRMFDLGFINDIRYLLRRLPKPENRLNLLFSATLSFKVTELAYEHMNNPVMVRVEPEQITAKQVVESVYYPADNEKIPLLLHLLTNEKPERGIIFINTKHTADRLHRYLKGNDFDNAVLSGDVPQKKRQTILTRFQDGKLPLLIATDVAARGLHIPAVSHVFNFDLPQDAEDYVHRIGRTARSGASGKAISFACETYAYSLPDIEAYISHKIPFENIDGASLPDV 390
BLAST of dead deah box helicase vs. nr
Match: gi|1270356045|gb|PHR50925.1| (ATP-dependent RNA helicase RhlB [Cycloclasticus sp.]) HSP 1 Score: 426.787 bits (1096), Expect = 4.214e-145 Identity = 205/390 (52.56%), Postives = 273/390 (70.00%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAF----------------------TRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAIAKI 368 MS+ HLT+ QF L PL+ L+++NF CTPIQ ++LP++L NDV GQAQTGTGKTIAFL+A + TR I DAK + + ++ LAYGG +Y Q++ IE GVDI+IGTPGR IDF KQK+ L+N EVLVLDEADRMFDLGF+ DIR+LLRRLP + RLN+LFSAT+S+ V ELAYEHMN+P V V ++ K++ E +Y+PA +EK+PLL+HL+ + + +RGI+FINTKH +R+ + L + + ++SGDV Q KR+ +L F+ G + +L+ATDVAARG+HI V +V N+DLP EDYVHRIGRTAR+GASG AISFACETY++ LPDIE +I HKIP ++ID ++ + Sbjct: 1 MSDTHLTDTQFSSLGLTAPLIQGLDEANFIKCTPIQEQTLPISLLGNDVAGQAQTGTGKTIAFLLATYHTLLTKTPADNKKGVRALILAPTRELAIQIANDAKIIGKHTDIKVGLAYGGTDYDKQRKTIEDGVDILIGTPGRTIDFFKQKVFNLRNTEVLVLDEADRMFDLGFINDIRYLLRRLPKPENRLNLLFSATLSFKVTELAYEHMNNPVMVRVEPEQITAKQVVESVYYPADNEKIPLLLHLLTNEKPERGIIFINTKHTADRLHRYLKGNDFDNAVLSGDVPQKKRQAILTRFQDGKLPLLIATDVAARGLHIPAVSHVFNFDLPQDAEDYVHRIGRTARSGASGKAISFACETYAYSLPDIEAYISHKIPFENIDGASLPDV 390
BLAST of dead deah box helicase vs. nr
Match: gi|1182631544|gb|ORU91431.1| (RNA helicase [Cycloclasticus sp. symbiont of Poecilosclerida sp. N]) HSP 1 Score: 426.402 bits (1095), Expect = 5.555e-145 Identity = 203/385 (52.73%), Postives = 272/385 (70.65%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAF-----------------------TRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDS 362 M + HLT+ +F L +PL++ L+ + F +CTPIQ ++LPV+L D+ GQAQTGTGKTIAFL+A + TR I DAK + N +ALAYGG +Y+ Q++ +E GVDI+IGTPGR IDF KQK+ L+N EVLVLDEADRMFDLGF+ DIR+LLRRLP+ ++RLN+LFSAT+S+ V ELAYEHMN+P V + ++ K++ E +Y+PA EK+PLLV ++ + +R I+FINTKHV E++ + L N + ++SGDV QNKR+ +L F++G + +L+ATDVAARG+HI V +V N+DLP EDYVHRIGRTAR+GASG AISFACETY++ LPDIE +I HKIP +SID+ Sbjct: 1 MPDTHLTDTKFSSIGLAKPLVDGLDDAGFKNCTPIQEQTLPVSLTGKDIAGQAQTGTGKTIAFLLATYQTLLGSAKASDNKTGVRALILAPTRELAIQIANDAKIIGKHTNICVALAYGGTDYEKQRKTLENGVDILIGTPGRTIDFFKQKVFNLRNAEVLVLDEADRMFDLGFINDIRYLLRRLPEPEKRLNLLFSATLSFKVTELAYEHMNNPVIVRIEPDKITAKQVTESMYYPADKEKMPLLVQILNEEKPERSIIFINTKHVAEKLKRILEGNNFESAVLSGDVPQNKRQSILKQFQEGKLPLLIATDVAARGLHIPAVSHVFNFDLPQDAEDYVHRIGRTARSGASGIAISFACETYAYSLPDIEAYISHKIPYKSIDA 385
BLAST of dead deah box helicase vs. nr
Match: gi|1199195844|gb|OUR64633.1| (RNA helicase [Methylophaga sp. 42_25_T18] >gi|1199218433|gb|OUR85736.1| RNA helicase [Methylophaga sp. 42_8_T64]) HSP 1 Score: 426.787 bits (1096), Expect = 6.407e-145 Identity = 213/392 (54.34%), Postives = 274/392 (69.90%), Query Frame = 0 Query: 5 HLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAFTRLY------NAD------------------IYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAIAKITIPS 372 HLT + F PL Q L N L + F CTPIQA++LPV L +DV GQAQTGTGKTIAFL+A F RL N D I +DA LN+ N RI +A+GG +Y+ Q++ I+AGVDI+IGTPGRL+D+ KQ++ L++++V+VLDEADRMFDLGF+KD+R+ +RR+P +R MLFSAT+SY V ELAYEHMN+P V + +V RIEEK+Y+PA++EK+PLL+ LI + QRGI+F+NTK V +RV L H + ++SGDV Q KRE LL F++GD LVATDVAARG+HI +V +V NYDLP EDYVHRIGRTARAGASG AISFACE Y+F LP+IE++I+HK+PV S SD + P+ Sbjct: 4 HLTEQAFSSLPLHQDLQNGLRDAGFEFCTPIQAQALPVLLAGHDVAGQAQTGTGKTIAFLLATFQRLLLEEPAENWDGKQPRALILAPTRELAIQIAKDAILLNSHTNLRIVIAHGGKDYEKQRDNIKAGVDILIGTPGRLLDYQKQRVFSLRHVQVVVLDEADRMFDLGFIKDVRYFMRRVPKPTDRQGMLFSATLSYKVIELAYEHMNNPEKVQIEPEKVMGDRIEEKVYYPANEEKIPLLLALIMRLQPQRGIIFVNTKRVADRVWGFLEGNGHKSALLSGDVPQKKRESLLKHFQEGDFPFLVATDVAARGLHIPEVSHVFNYDLPQESEDYVHRIGRTARAGASGVAISFACEDYAFSLPEIEQYIKHKLPV-SATSDEVLLTPSPA 394
BLAST of dead deah box helicase vs. nr
Match: gi|1247473404|gb|PCJ30390.1| (ATP-dependent RNA helicase RhlB [Gammaproteobacteria bacterium]) HSP 1 Score: 426.402 bits (1095), Expect = 8.756e-145 Identity = 211/388 (54.38%), Postives = 271/388 (69.85%), Query Frame = 0 Query: 5 HLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAFTRL--------YNA----------------DIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAIAKI 368 HLT + F PL L L+ + F CTPIQA+SLP+ L DV GQAQTGTGKTIAFL+A F +L +N I +DA LNTE RIA+AYGG +Y+ Q+ I GVDI+IGTPGRL+DF+KQ + L++I+ +VLDEADRMFDLGF+KD+R+ LRR+P A ERL MLFSAT+SY V ELAYEHMN+P V VA+ +V RIEE +++PA++EK+PLL+ LI+ RGI+F+NTK +RV L ++ A ++SGDV Q KRE LL F+ G+ LVATDVAARG+HI +V +V NYDLP VEDYVHRIGRTARAGASG AISFACE Y+F LPDIE++I+HK+PV + ++ + ++ Sbjct: 4 HLTEQAFSGLPLHDSLQKGLQAAGFEFCTPIQAKSLPLLLAGQDVAGQAQTGTGKTIAFLLATFQKLLMSEKPKNWNGKQPRAFILAPTRELANQIAKDAILLNTEAKLRIAVAYGGKDYEKQKTEITDGVDILIGTPGRLLDFHKQGVFNLKSIQAIVLDEADRMFDLGFIKDVRYFLRRVPAASERLGMLFSATLSYKVIELAYEHMNNPEKVEVAAGKVASDRIEESVFYPANEEKIPLLLALIKRINPLRGIIFVNTKRAADRVWGYLEGNDYKAALLSGDVPQKKREGLLKKFQDGEFPFLVATDVAARGLHIPEVSHVFNYDLPQDVEDYVHRIGRTARAGASGVAISFACEDYAFSLPDIEQYIKHKLPVSAASNEVLEEV 391
BLAST of dead deah box helicase vs. nr
Match: gi|1247360596|gb|PCI21946.1| (ATP-dependent RNA helicase RhlB [Piscirickettsiaceae bacterium]) HSP 1 Score: 424.861 bits (1091), Expect = 2.465e-144 Identity = 202/384 (52.60%), Postives = 271/384 (70.57%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAF----------------------TRLYNADIYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDS 362 M++ HLT+ F L + L+ L + F+HC+PIQ ++LP+TL++ DV GQAQTGTGKTIAFL+A + TR IY DA + + ++ LAYGG +Y+ Q++ +E GVDI+IGTPGR IDF KQK+ L+ EVLVLDEADRMFDLGF+ DIR+LLRRLP+ +RLNMLFSAT+S+ V ELAYEHMN P V + ++ K++EE +Y+PA +EK+PLLV L+ R I+FINTKH +++ +TL + N+ ++SGDV Q KR+++L F++G++ IL+ATDVAARG+HI DV +V N+DLP EDYVHRIGRTAR+GASG AISFACETY++ LPDIE +I HKIP + +DS Sbjct: 1 MASTHLTDTAFSTLGLSEQLMQGLNAAGFTHCSPIQEQTLPITLQSKDVAGQAQTGTGKTIAFLLATYQNLMMGEPSENPRSIRALILAPTRELAIQIYNDATIIGKYTSIKVGLAYGGTDYEKQRQTLEDGVDILIGTPGRTIDFFKQKVFNLKCAEVLVLDEADRMFDLGFINDIRYLLRRLPEPTQRLNMLFSATLSFKVTELAYEHMNEPEMVRIEPEQITAKQVEEFMYYPADNEKIPLLVMLLNEQTPTRAIIFINTKHNADKLNRTLEGNDFNSAVLSGDVPQKKRQRILKQFQEGNLPILIATDVAARGLHIPDVSHVFNFDLPQDAEDYVHRIGRTARSGASGIAISFACETYAYSLPDIEAYITHKIPFKHVDS 384
BLAST of dead deah box helicase vs. nr
Match: gi|516452652|ref|WP_017841564.1| (RNA helicase [Methylomicrobium buryatense]) HSP 1 Score: 424.476 bits (1090), Expect = 6.354e-144 Identity = 201/392 (51.28%), Postives = 272/392 (69.39%), Query Frame = 0 Query: 1 MSNNHLTNKQFKDFPLPQPLLNSLEQSNFSHCTPIQAESLPVTLENNDVIGQAQTGTGKTIAFLIAAFTRLYNAD---------------------IYEDAKKLNTELNYRIALAYGGNNYKAQQEVIEAGVDIVIGTPGRLIDFNKQKLLKLQNIEVLVLDEADRMFDLGFLKDIRFLLRRLPDAKERLNMLFSATVSYDVEELAYEHMNSPTNVAVASTEVEDKRIEEKLYFPASDEKLPLLVHLIESTEMQRGIVFINTKHVGERVAQTLIAMNHNAGIISGDVAQNKREKLLDDFRKGDIKILVATDVAARGIHIDDVDYVINYDLPNHVEDYVHRIGRTARAGASGHAISFACETYSFILPDIEEFIEHKIPVQSIDSDAIAKITIP 371 M+ HLT +F + L +L+ L ++ F+HCTPIQ SLP++L + D+ GQAQTGTGKT FL+A F RL N + I++DA +L LN + AL YGG +YK Q + I++ VDI+IGTPGR+IDF +Q L N++V+VLDEADRMFDLGF+KDIRFLLRR+P A +RLNMLFSAT+SY V ELAYEHMN P + + + EV K I + + P++++K+PLL+ +++ QR I+F+NTK ER+ L A ++SGDV Q KR++LL DF++ I++++ATDVAARG+HI DV +VINYDLP VEDYVHRIGRTAR GASG AISF CE Y++ +PDIE +I K+P+QSI +D +A++ P Sbjct: 1 MNTTHLTQTRFSNLELSDSILHGLTEAGFTHCTPIQDRSLPLSLRDKDIAGQAQTGTGKTATFLLATFQRLINDESEKIKNPRAVILAPTRELAIQIHKDALQLGKYLNLKFALIYGGTDYKKQMDTIKSNVDIIIGTPGRIIDFYRQGTFTLDNVQVMVLDEADRMFDLGFIKDIRFLLRRMPPADKRLNMLFSATLSYKVTELAYEHMNQPVLIKIETEEVTSKAIRQSAFCPSNEQKIPLLLGVLKKYAPQRSIIFVNTKRCAERLNDYLNANGFVTAVLSGDVPQEKRQRLLTDFQENKIRLMIATDVAARGLHIADVSHVINYDLPQEVEDYVHRIGRTARFGASGEAISFICEEYAYSMPDIETYIGQKVPIQSITADLLAEVVKP 392 The following BLAST results are available for this feature:
BLAST of dead deah box helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of dead deah box helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of dead deah box helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold8_size885657:704699..706087- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold8_size885657-snap-gene-7.3 ID=maker-scaffold8_size885657-snap-gene-7.3|Name=dead deah box helicase|organism=Tigriopus kingsejongensis|type=gene|length=1389bp|location=Sequence derived from alignment at scaffold8_size885657:704699..706087- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'dead deah box helicase' has the following synonyms
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