abca2 partial, maker-scaffold927_size80360-snap-gene-0.20 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000001122 (supercontig:LSalAtl2s:LSalAtl2s118:125434:135666:1 gene:EMLSAG00000001122 transcript:EMLSAT00000001122 description:"maker-LSalAtl2s118-snap-gene-1.28") HSP 1 Score: 257.299 bits (656), Expect = 3.051e-76 Identity = 195/723 (26.97%), Postives = 321/723 (44.40%), Query Frame = 0
Query: 4 PTTAIPPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSP----------------------------------------ESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESAD------MEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISD---LAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRW---LRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVA-FLYARFPSILNLKRHHNTITFNVQCRSLSV 664
P PP + S D+L ++ N + + +++ T +F +RFGG+ +P + A+ T + + VW+NNKG + SY+NA++N +LRAT+E +++S++GI NHP+ T+ Q + + V + +V +L S +P+S + + E + K + V GV TYW I D + L FI V I + S S ANF G L+ Y F + S +L N++ G+I LTT+++ + + VL +F+ P + L GL + I + ++ + + S W LG N L L E V+FF+ N+++E ++ + W + P DEDV E QRV + ++K + R ++ AVD +S G++ GECFG LG+NGAGK+TTFK+LTG++ PT+G +N +GYCPQE+++ LLT RE L++Y ++RG+ + KI+N + +L + IR G +SV++TSHSMEECE LC+RL IM +GKF+CLG+ +K +FG G+ + + S+ F+ FP + H+N +T+ + +++ +
Sbjct: 9 PPNYYPPEVKLPSGDILQNL-NGRNISDYLIKTRFEFEGKRFGGFEFGILNPLAGRNFDQWADSFQKISKATNMNESRVDAFTSTFAKEALVDMAYSSSTFDYIRVWFNNKGWASSVSYMNAVNNMVLRATIEEKSERMHELVDSSKYGIAAINHPMNYTSDQFSNHQLNGIVEALLNSVNILLVLSILPASYVLNYVLENNLKIKHLHFVYGVKITTYWITGYIFDTIIFCINLVFITVALIAIDA---SSLISDANFYGFATLIILYSF-----------FFKKQSSALFALLNLNLMIGIIPFLTTLLVKY---VNEDEKLYYVLETLFMIFPQFCLIHGLFQMFIENIKSITYEDLGFTST--ASTFDWNYLGQNYLFLFFEAVIFFIANIMMEVRIFESWRLKILPDAFTKAQKETDDEVMDEDVYEEYQRVMNA-------YNELSKRYWR--QKNSAVDKLSFGVRRGECFGLLGINGAGKTTTFKMLTGDINPTSGDAFINGYSIFNEMGRCRQSLGYCPQEDALHPLLTGREHLELYSRLRGVNKKSEIKIVNYFLKELDV-----IRGG---------------------------------------------------QSVVLTSHSMEECEVLCSRLGIMVNGKFKCLGTAQHLKSRFGSGYSLTIRSGTTDGNLDSLKDFVLNAFPFSEIKEEHYNQLTYQIPLKTIKL 646
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000001342 (supercontig:LSalAtl2s:LSalAtl2s1226:24200:67450:1 gene:EMLSAG00000001342 transcript:EMLSAT00000001342 description:"snap_masked-LSalAtl2s1226-processed-gene-0.1") HSP 1 Score: 97.8265 bits (242), Expect = 2.277e-21 Identity = 65/250 (26.00%), Postives = 125/250 (50.00%), Query Frame = 0
Query: 377 EDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELE----------PTAGHYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVEN-GRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGE 615
ED+D + + + ++ L + K + + ++++++ I G +G LG +G GK+T + G + + G + PG +GY PQE ++ TVRE LK + ++ + ++ I+ + L + +++ G LSGG KR+V A A L DP+L ++DEPT G+D ++ +W + N +++++T+H +EE T + +M +GK SP ++ + +GE
Sbjct: 10 EDDDSSFKNMENEPRI---VVALRDACKYYGKNAMENRVLNNLNLTITEGSIYGLLGASGCGKTTVLSCIVGRKKLNKGQVTVFGGSPGDKGIGIPGNRIGYMPQEIALYKEFTVRETLKYFGRLYEMETDQIDQRIDFILKFLQI-TRDRDMVGKLSGGQKRRVSFAAALLHDPELYILDEPTVGVDPRLRKSIWNHLTDLALNRKKTILITTHYIEEARQ-ATSIGLMRNGKLLAESSPEKLLQIYGE 254
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000000074 (supercontig:LSalAtl2s:LSalAtl2s100:66414:68636:-1 gene:EMLSAG00000000074 transcript:EMLSAT00000000074 description:"augustus_masked-LSalAtl2s100-processed-gene-0.5") HSP 1 Score: 95.9005 bits (237), Expect = 9.849e-21 Identity = 66/233 (28.33%), Postives = 125/233 (53.65%), Query Frame = 0
Query: 397 LWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQ----------LNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKS--VIDLGLDSQESIR-CGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWR---TIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKF 613
+W+ N K F + +++ + G +G LG +G GK+T +++TG + +G ++ L PG +GY PQ+ ++ LT+ E L Y ++ ++ + KI +++ +I++ L+ S R N+SGG +R++ AVA L +P+L+++DEPT G+D V ++++W TI R++I+T+H +EE + ++ GK +P ++ EKF
Sbjct: 24 IWIRNAYKHFG-TKSNTSLFTGLNMSVPKGVIYGLLGPSGCGKTTLLRVITGREKLNSGEFKIFGEDPGTVGLEVPGRRIGYMPQDLALYMELTILETLFFYGRLNKMQ---TSKIRSRAETLIEI-LELPHSGRLVQNMSGGQRRRISLAVALLHEPELLVLDEPTVGVDPVLRQYIWDHLLTIVNNSSKKRTIIITTHYVEEARQ-AHIVGMLRYGKILDEDAPTKLLEKF 250
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000000736 (supercontig:LSalAtl2s:LSalAtl2s1118:20544:21383:1 gene:EMLSAG00000000736 transcript:EMLSAT00000000736 description:"augustus_masked-LSalAtl2s1118-processed-gene-0.6") HSP 1 Score: 82.4185 bits (202), Expect = 1.414e-17 Identity = 54/197 (27.41%), Postives = 103/197 (52.28%), Query Frame = 0
Query: 404 KEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHY----------QLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVEN---GRSVIMTSHSMEECEH 587
K F ++++ + ++S+ I G +G LG +G+GK+T + + G+ +G L PG +GY PQ+ ++ LT+ E L+ Y ++ + +K K +++L ++ I LSGG +R+ AVA L +P L+++DEPT G+D V +R++W + N ++++T+H ++E
Sbjct: 34 KSFGWGKKKVNVLVNLSIRITKGHIYGLLGPSGSGKTTLLQCVIGKQSLDSGSILVFGEYPGTKDLGVPGKRVGYMPQDLAMYMELTIMETLEFYGRIFNMPKAKIKKRA-KFLVELLELPKKKILIQKLSGGHQRRASLAVALLHEPDLLILDEPTVGVDPVLRRNIWGHLVDICNNPIRKTTIVVTTHYVDEARQ 229
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000001147 (supercontig:LSalAtl2s:LSalAtl2s118:91392:124552:1 gene:EMLSAG00000001147 transcript:EMLSAT00000001147 description:"maker-LSalAtl2s118-snap-gene-1.27") HSP 1 Score: 65.4698 bits (158), Expect = 2.911e-11 Identity = 27/84 (32.14%), Postives = 55/84 (65.48%), Query Frame = 0
Query: 538 LGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIAL 621
+G ++I++DEPT+G+D ++R +W + R + GR++I+T+H M+E + L R+ I+++GK G ++ +FG G ++ +
Sbjct: 507 VGGSRVIILDEPTAGVDPFSRRSIWDILIR-YKTGRTIILTTHFMDEADLLGDRIAIISEGKLITCGXSLFLRNRFGNGXYLTI 589
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000003104 (supercontig:LSalAtl2s:LSalAtl2s174:364234:370462:-1 gene:EMLSAG00000003104 transcript:EMLSAT00000003104 description:"maker-LSalAtl2s174-augustus-gene-3.18") HSP 1 Score: 61.6178 bits (148), Expect = 5.195e-10 Identity = 67/289 (23.18%), Postives = 126/289 (43.60%), Query Frame = 0
Query: 333 NVLILALETVVFFLFNLVLEYK--LIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQV------RGIRW-------RDSEKIINKSVIDLGLDS-------QESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGK 599
N L+ L + FL ++ E + LI + Q A P+ + G E + T D+ + N+ K + +S +++G+ +G +G+GKST ++L EP G ++ Y E ++D+L ++ C + I++ D K+ + ID + S Q R LSGG K++V A A L D +I+ DE TS +D++T+ + + ++R V +G++ I+ +H + H + ++++GK
Sbjct: 304 NGLLFQLSLPLNFLGSVYREIRQSLIDMQVMFQLMATPSKITSSKGATEINFINNMEDASITFDDVKFGYNIDKNI---------ANGLSFSVESGKTIAIVGESGSGKSTLVRLLYRFYEPQLGSIKIG------NYNINEVTLDSLRRQISIVPQDCVLFNDTIFHNIKYGNLNCSDEDVYKVAKLAEIDNAIRSWPQGYLTQVGERGLKLSGGEKQRVAIARAALKDSPIIIFDEATSSLDSITETMIMKALKR-VTSGKTAIIIAHRLSTVVH-ADEIFVLSNGK 575
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000000940 (supercontig:LSalAtl2s:LSalAtl2s1166:1016:21423:-1 gene:EMLSAG00000000940 transcript:EMLSAT00000000940 description:"maker-LSalAtl2s1166-snap-gene-0.62") HSP 1 Score: 56.225 bits (134), Expect = 2.275e-8 Identity = 44/140 (31.43%), Postives = 62/140 (44.29%), Query Frame = 0
Query: 419 VSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPP---GTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQ-ESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMD 554
V GI +G NG GKST K+L G+LEPT G + N G + + + D T M V R K + GL S +I+ +LSGG K +V A L P ++++DEPT+ +D
Sbjct: 529 VDFGIDMESRIAIVGPNGVGKSTFLKLLMGDLEPTKGEMRKNARLKIGRFDQHSGEHLTADEXPTEYIMRLFNLPVEKAR---------KQLGSFGLQSHAHTIKMKDLSGGQKSRVALAELTLSAPDVVILDEPTNNLD 659
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000000133 (supercontig:LSalAtl2s:LSalAtl2s1021:132111:135265:-1 gene:EMLSAG00000000133 transcript:EMLSAT00000000133 description:"maker-LSalAtl2s1021-augustus-gene-0.34") HSP 1 Score: 54.299 bits (129), Expect = 9.073e-8 Identity = 49/182 (26.92%), Postives = 86/182 (47.25%), Query Frame = 0
Query: 420 SVGIQAG-----ECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDP-KLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSV-IMTSHSMEECEHLCTRLVI 594
+ +QAG E LG NG GK+T +++ G+LEP G ++ P + Y PQ+ S + TVR +L + I + ++ ID +D + NLSGG ++V A LG P + L+DEP++ +D+ + + I+R + + + + H +L R ++
Sbjct: 376 KLSVQAGNFSDSEILVMLGENGTGKTTFIRMMAGKLEPDTGSGEI--PQLNISYKPQKISPKSQGTVRTLLHEKIRDAYIHPQFVADVMRPMKIDDIIDQE----VQNLSGGELQRV-ALTLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKKTGFVVEHDFIMATYLADRXIV 550
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000002221 (supercontig:LSalAtl2s:LSalAtl2s1420:21426:31801:1 gene:EMLSAG00000002221 transcript:EMLSAT00000002221 description:"maker-LSalAtl2s1420-augustus-gene-0.12") HSP 1 Score: 53.5286 bits (127), Expect = 1.820e-7 Identity = 47/203 (23.15%), Postives = 96/203 (47.29%), Query Frame = 0
Query: 419 VSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRW-RDSEKIINKSVIDL--GLDSQESIRCG-NLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTI---QRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFG 614
VS+ I+ G +G G+GKS+ + GE++ +G + G++ Q ++T +++ + G ++ R E KS +D+ G D E G NLSGG K++V A A + L+D+P S +D+ +H++ + + ++ +M +H + ++++M DG+ +G+ ++ + G
Sbjct: 657 VSLDIEVGSLVAVVGTVGSGKSSLLSAILGEMDKVSGLITVR--GSIAYGAQQAWVLNT--SLKNNILFNKSYDGDKYTRIVEACALKSDLDMLPGGDETEIGEKGINLSGGQKQRVSLARAVYSGSDIYLLDDPLSAVDSHVGKHIYDNVISSSSGILKDKTRVMVTHGVTYLP-FTDKIIVMKDGRVSEIGTYKELLRQKG 854
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000000752 (supercontig:LSalAtl2s:LSalAtl2s111:55855:93761:1 gene:EMLSAG00000000752 transcript:EMLSAT00000000752 description:"maker-LSalAtl2s111-augustus-gene-1.10") HSP 1 Score: 53.1434 bits (126), Expect = 2.398e-7 Identity = 67/325 (20.62%), Postives = 145/325 (44.62%), Query Frame = 0
Query: 305 FITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTLMGYCPQE-----NSVDTLLTV---------REMLKVYCQVRGIR-WRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFG 614
F+ LFD+++ P + P A+ + +++++ + FL L+ E + +Q + + + G E + +E +++G+ WL + + EFT + ++S ++ GE +G G GKST + L GE + G ++N G + Y QE SV + + RE+++V +R W D D ++ I +LSGG K ++ A + ++D+P S +D + ++ T ++ + ++VI+ +H ++ ++ +++ +DG+ + G+ ++ + G
Sbjct: 652 FLIFGLFDAIKLPLTHFFPS---AISASSEALVSMKRIEEFL--LLNELRDVQ---------SKINHVILPGRYEPLTVEVTKISGK------WLDS-SNEFT--------LKNISFSVEIGELCAIIGPVGCGKSTIIQSLLGEFPVSYG--EINIKGRI-SYASQEAWIFSGSVRQNILMGKPLIDKRYREVIRVCALEHDVREWPDG---------DYTFVGEKGI---SLSGGQKSRINLARCVYASADIYILDDPLSAVDPHVGQQLFDTCIQKFLSDKTVILVTHQLQFLKNANNIILLNSDGEIEASGTYEKLMSQSG 932
BLAST of abca2 partial vs. SwissProt
Match: gi|206729923|sp|Q9BZC7.3|ABCA2_HUMAN (RecName: Full=ATP-binding cassette sub-family A member 2; AltName: Full=ATP-binding cassette transporter 2; Short=ATP-binding cassette 2) HSP 1 Score: 461.07 bits (1185), Expect = 3.605e-141 Identity = 256/721 (35.51%), Postives = 406/721 (56.31%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGG-----------WSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEF-TRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCR--SLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705
PP+ + + D+L DIT + + ++L T +F R+G S T +P + V+YNNKG H++P+YLN+++NA+LRA + + + +GIT NHP+ T+ L+ ++Q D+ IA+ ++ A SFVP+S + +L+ E++ + K +Q V+G +P+ YW + D+ L I+L +F + +YTS NFP VL L Y + T ++Y F PS + ++ N+ G+ + T +L + K + L FL P+Y+LG GL+ +A N NE + + ++ K P W ++ ++ +A+E VV FL ++ +Y ++R PQR P ST +D DVA ERQRV G D++ + N+TK + +R RI+AVD + +G++ GECFG LG+NGAGK++TFK+LTG+ T G +N L +GYCPQ +++ LT RE L++Y ++RGI W+D +++ ++ L L G SGG KRK+ A+A +G P I +DEPT+GMD +R +W I ++ GRSV++TSHSMEECE LCTRL IM +G+ +CLGS +K +FG+G+ I + K+ + V V F FP + +RHH + + ++ SL+ ++ + +LGIED +VS+T+LD VFVNFA+K+S E
Sbjct: 1659 PPQMRVVTGDILTDITGH-NVSEYLLFTSDRFRLHRYGAITFGNVLKSIPASFGTRAPPMVRKIAVRRAAQVFYNNKGYHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLLQGT-DVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPIIYWLANYVWDMLNYLVPATCCVIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVINLFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYYAKIGQ-FDKMKSPFEWDIVTRGLVAMAVEGVVGFLLTIMCQYNFLRR---PQRM--PVST-KPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKELLQVQQSLGYCPQCDALFDELTAREHLQLYTRLRGISWKDEARVVKWALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQSVKDVVRFFNRNFPEAMLKERHHTKVQYQLKSEHISLAQVFSKMEQVSGVLGIEDYSVSQTTLDNVFVNFAKKQSDNLEQ 2370 HSP 2 Score: 143.665 bits (361), Expect = 6.417e-34 Identity = 83/261 (31.80%), Postives = 146/261 (55.94%), Query Frame = 0
Query: 377 EDEDVALERQRVNGQTTG-----DLLWLSNVTKEFTRVQR--RIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIAL 621
ED+ A+E +R +T G L L + T+V + + +A++ +S+ + + +LG NGAGK+TT ILTG PT+G +++ +G CPQ N + LTV E L Y +++ + + + ++K + DL L ++ LSGG KRK+ A+AF+G + I++DEPT+G+D +R +W I + + GR++++++H M+E + L R+ I++ GK +C GSP +K +G+G+ + L
Sbjct: 962 EDQACAMESRRFE-ETRGMEEEPTHLPLVVCVDKLTKVYKDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRREMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILK-YKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYRLTL 1220
BLAST of abca2 partial vs. SwissProt
Match: gi|62512166|sp|P41234.4|ABCA2_MOUSE (RecName: Full=ATP-binding cassette sub-family A member 2; AltName: Full=ATP-binding cassette transporter 2; Short=ATP-binding cassette 2) HSP 1 Score: 447.973 bits (1151), Expect = 1.225e-136 Identity = 253/721 (35.09%), Postives = 402/721 (55.76%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSPE-SAFLGGTQENLV----------VWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEF-TRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCR--SLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705
PP+ + + D+L DIT + + ++L T +F R+G + A G +V V YNNKG H++P+YLN+++NA+LRA + + + +GIT NHP+ T+ L+ ++Q D+ IA+ ++ A SFVP+S + +L+ E++ + K +Q V+G +PV YW + D+ L I+L +F + +YTS NFP VL L Y + T ++Y F PS + ++ N+ G+ + T +L + K + L FL P+Y+LG GL+ +A N NE + + ++ K P W ++ ++ + +E V F ++ +Y +++ PQR P ST +D DVA ERQRV G D++ + N+TK + +R RI+AVD + +G++ GECFG LG+NGAGK++TFK+LTG+ T G +N L +GYCPQ +++ LT RE L++Y ++RGI W+D +++ ++ L L G SGG KRK+ A+A +G P I +DEPT+GMD +R +W I ++ GRSV++TSHSMEECE LCTRL IM +G+ +CLGS +K +FG+G+ I + K+ + V V F FP + +RHH + + ++ SL+ ++ + +LGIED +VS+T+LD VFVNFA+K+S E
Sbjct: 1660 PPQMRVVTGDILTDITGH-NVSEYLLFTSDRFRLHRYGAITFGNVQKSIPASFGARVPPMVRKIAVRRVAQVLYNNKGYHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLLQGT-DVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPVIYWLANYVWDMLNYLVPATCCVIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVINLFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYYAKIGQ-FDKMKSPFEWDIVTRGLVAMTVEGFVGFFLTIMCQYNFLRQ---PQRL--PVST-KPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKDLLQVQQSLGYCPQFDALFDELTAREHLQLYTRLRGIPWKDEAQVVKWALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQNVKDVVRFFNRNFPEAMLKERHHTKVQYQLKSEHISLAQVFSKMEQVVGVLGIEDYSVSQTTLDNVFVNFAKKQSDNVEQ 2371 HSP 2 Score: 142.124 bits (357), Expect = 2.148e-33 Identity = 150/638 (23.51%), Postives = 275/638 (43.10%), Query Frame = 0
Query: 151 IAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFF---YCSASTTLVYCLEKLFAEPSL----GQLMVLCANILSGMILLLTTIILDVLYAIK---AARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPN------VLILALETVVFFLFNLVLE------YKLIQRWLRPQRTA--------NPASTIGATGEDEDVALERQ--------RVNGQTTG-----DLLWLSNVTKEFTRVQR--RIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYA-----------RFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQAL------------------LGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705
I +++ E+ R K+V G++ +W I+ F+ ++ V + I Y VLI+ F Y A+ + + L+++ L G ++ + + + + + D + A + A+R ++ L W VPS + + + + S+++ + P V G + V +L ++TVV+ + +E Y L + W R+ P S G AL R+ R +T G L L + T+V + + +A++ +S+ + + +LG NGAGK+TT ILTG PT+G +++ +G CPQ N + LTV E L Y +++ + + K +K + DL L ++ LSGG KRK+ A+AF+G + I++DEPT+G+D +R +W I + + GR++++++H M+E + L R+ I++ GK +C GSP +K +G+G+ + L + + S L + P + R H + V S + Y ILP++A+ L + + T+L+EVF+ +E+ E +
Sbjct: 722 IQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITG------FVQLSISVTALTAILKYCQVLMHSHVLIIWLFLAVYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASRCPQQPLAW----VPS----------TLHCMKWQEWASIQWHTFSQSP-----VEGDDFNLLLAVTMLMVDTVVYGVLTWYIEAVHPGMYGLPRPWYSRYRSPIGWAVGGQKPGSGAGHGHTHRASALWRRIQACAMESRHFEETRGMEEEPTHLPLVVCVDKLTKVYKNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRKETDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILK-YKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTLVKQPAEPGTSQEPGLASSPSGCPRLSSCSEPQVSQFIRKHVASSLLVSDTSTELSY--ILPSEAVKKGAFERLFQQLEHSLDALHLSSFGLMDTTLEEVFLKVSEEDQSLENS 1331
BLAST of abca2 partial vs. SwissProt
Match: gi|51315732|sp|Q9ESR9.1|ABCA2_RAT (RecName: Full=ATP-binding cassette sub-family A member 2; AltName: Full=ATP-binding cassette transporter 2; Short=ATP-binding cassette 2) HSP 1 Score: 447.973 bits (1151), Expect = 1.237e-136 Identity = 252/721 (34.95%), Postives = 404/721 (56.03%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSPESAFLGGTQENLVV-----------WYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEF-TRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCR--SLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705
PP+ + + D+L DIT + + ++L T +F R+G + GT+ L+V YNNKG H++P+YLN+++NA+LRA + + + +GIT NHP+ T+ L+ ++Q D+ IA+ ++ A SFVP+S + +L+ E++ + K +Q V+G +PV YW + D+ L I+L +F + +YTS NFP VL L Y + T ++Y F PS + ++ N+ G+ + T +L + K + L FL P+Y+LG GL+ +A N NE + + ++ K P W ++ ++ + +E V F ++ +Y +++ PQR P ST +D DVA ERQRV G D++ + N+TK + +R RI+AVD + +G++ GECFG LG+NGAGK++TFK+LTG+ T G +N L +GYCPQ +++ LT RE L++Y ++RGI W+D +++ ++ L L G+ SGG KRK+ A+A +G P I +DEPT+GMD +R +W I ++ GRSV++TSHSMEECE +CTRL IM +G+ +CLGS +K +FG+G+ I + K+ + V V F FP + +RHH + + ++ SL+ ++ + +LGIED +VS+T+LD VFVNFA+K+S E
Sbjct: 1660 PPQMRVVTGDILTDITGH-NVSEYLLFTSDRFRLHRYGAITFGNIQKSIPAPIGTRTPLMVRKIAVRRVAQVLYNNKGYHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLLQGT-DVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPVIYWLANYVWDMLNYLVPATCCIIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVINLFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLMEIAYNEYINEYYAKIGQ-FDKMKSPFEWDIVTRGLVAMTVEGFVGFFLTIMCQYNFLRQ---PQRL--PVST-KPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKDLLQVQQSLGYCPQFDALFDELTAREHLQLYTRLRGIPWKDEAQVVRWALEKLELTKCADKPAGSYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEAVCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQNVKDVVRFFNRNFPEAMLKERHHTKVQYQLKSEHISLAQVFSKMEHVVGVLGIEDYSVSQTTLDNVFVNFAKKQSDNVEQ 2371 HSP 2 Score: 143.28 bits (360), Expect = 8.893e-34 Identity = 132/526 (25.10%), Postives = 234/526 (44.49%), Query Frame = 0
Query: 151 IAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFF---YCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLH----------WIFLFVPSYSLGEGLLVL---ATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLE------YKLIQRWLRPQRTA-----------------NPASTIGATGEDEDVALERQRVNGQTTG-----DLLWLSNVTKEFTRVQR--RIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIAL 621
I +++ E+ R K+V G++ +W I+ F+ ++ V + I Y VLI+ F Y A+ + + L+++ L A+ G+I L+ V Y A R+ EV H + ++ LG L A I F + + L+ V +L ++TVV+ + +E Y L + W P + + A + ED+ A+E + +T G L L + T+V + + +A++ +S+ + + +LG NGAGK+TT ILTG PT+G +++ +G CPQ N + LTV E L Y +++ + + K ++K + DL L ++ LSGG KRK+ A+AF+G + I++DEPT+G+D +R +W I + + GR++++++H M+E + L R+ I++ GK +C GSP +K +G+G+ + L
Sbjct: 723 IQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITG------FVQLSISVTALTAILKYGQVLMHSHVLIIWLFLAVYAVATIMFCFLVSVLYSKAKL-------ASACGGIIYFLSY----VPYMYVAIRE--EVAHDKITAFEKCIASLMSTTAFGLGSKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLA-------VTMLMVDTVVYGVLTWYIEAVHPGMYGLPRPWYFPLQKSYWLGSGRTETWEWSWPWAHAPRLSVMEEDQACAMESRHFE-ETRGMEEEPTHLPLVVCVDKLTKVYKNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDQLTVEEHLWFYSRLKSMAQEEIRKEMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILK-YKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTL 1220
BLAST of abca2 partial vs. SwissProt
Match: gi|60391189|sp|O35600.1|ABCA4_MOUSE (RecName: Full=Retinal-specific ATP-binding cassette transporter; AltName: Full=ATP-binding cassette sub-family A member 4; AltName: Full=RIM ABC transporter; Short=RIM protein; Short=RmP) HSP 1 Score: 444.891 bits (1143), Expect = 1.387e-135 Identity = 270/767 (35.20%), Postives = 421/767 (54.89%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFL-----------DQRFGGWSLATSSPE--------SAFLGG----------------------------TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIG----SYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSV--EYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKL-IQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARK-----FVASSVAFLYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENP 706
PP+ ST+VL D+TN+ + + +++ T+ + +QR+GG S+ P FL G T +N+ VW+NNKG HAL S+LN HNA+LRA++ D + ++GIT + P+ +T QL+ T++ D +A+ ++ A SFVP+S + YLI ER + K +Q ++GVSP TYW + D+ + + V G+V+ IF IG +YTS N P ++ L+ Y A ++Y LF PS + + CAN+ G+ T +L++ + + +L + + P + LG GL+ LA + +++ EY +N P W ++G N++ +A+E VV+FL L++++ + RW+ A PA ED+DVA ERQRV +G D+L L+ +TK ++ AVD + VG++ GECFG LG+NGAGK+TTFK+LTG+ T+G + L MGYCPQ +++D LLT RE L +Y ++RG+ ++ EK+ N + LGL G SGG KRK+ A+A G P L+L+DEPT+GMD +R +W TI + GR+V++TSHSMEECE LCTRL IM G FQCLG+ +K KFG+G+ + + K+ K + F FP + +RHH+ + F V SL+ I+ ++ ++ L IE+ +V++T+LD+VFVNFA++++ + P
Sbjct: 1510 PPQRTQRSTEVLQDLTNR-NISDYLVKTYPALIRSSLKSKFWVNEQRYGGISIGGKLPAIPISGEALVGFLSGLGQMMNVSGGPVTREASKEMLDFLKHLETTDNIKVWFNNKGWHALVSFLNVAHNAILRASLPR-DRDPEEYGITVISQPLNLTKEQLSDITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQERVTKAKHLQFISGVSPTTYWLTNFLWDI---MNYAVSAGLVVGIF-IGFQKKAYTSPDNLPALVSLLMLYGWAVIPMMYPASFLFEVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYAQFGEEYSAN----PFQWDLIGKNLVAMAIEGVVYFLLTLLIQHHFFLTRWI-----AEPARE-PVFDEDDDVAEERQRVMSGGNKTDILKLNELTKVYSGSSSP--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTSISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPSKEIEKVANWGIQSLGLSLYADRLAGTYSGGNKRKLSTAIALTGCPPLLLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGTFQCLGTIQHLKYKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQRERHHSMLQFQVPSSSLARIFQLLISHKDSLLIEEYSVTQTTLDQVFVNFAKQQTETYDLP 2258 HSP 2 Score: 158.688 bits (400), Expect = 1.077e-38 Identity = 106/358 (29.61%), Postives = 176/358 (49.16%), Query Frame = 0
Query: 399 LSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKF---------VASSVAFLYA-RFPS-----------------ILNLKRHHNTITFNVQCRSLSVIYGHILPNQ------------------ALLGIEDVNVSKTSLDEVFVNFAEKKSHG 702
+ N+ K F R AVD +++ + +LG NGAGK+TT ILTG L PT+G L+ +G CPQ N + LTV E + Y Q++G W +++ + + D GL + + +LSGG +RK+ A+AF+GD K++++DEPTSG+D ++R +W + + +GR++IM++H M+E + L R+ I++ G+ C G+P +K FG GF++ L K + V S + ++ R P+ +++L HH V+C +I+ +LPN+ A LG+ +S T L+E+F+ E G
Sbjct: 931 VKNLVKVFEPSGRP--AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLIGGKDIETNLDVVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDSKVVVLDEPTSGVDPYSRRSIWDLLLK-YRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGVCSCTSKGFSTRCPTRVDEITEEQVLDGDVQELMDLVYHHVPEAKLVECIGQELIF--LLPNKNFKQRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDAGAG 1283
BLAST of abca2 partial vs. SwissProt
Match: gi|6707663|sp|P78363.3|ABCA4_HUMAN (RecName: Full=Retinal-specific ATP-binding cassette transporter; AltName: Full=ATP-binding cassette sub-family A member 4; AltName: Full=RIM ABC transporter; Short=RIM protein; Short=RmP; AltName: Full=Stargardt disease protein) HSP 1 Score: 425.631 bits (1093), Expect = 6.460e-129 Identity = 244/664 (36.75%), Postives = 380/664 (57.23%), Query Frame = 0
Query: 63 TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIG----SYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLE-YKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARK-----FVASSVAFLYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENP 706
T++N+ VW+NNKG HAL S+LN HNA+LRA++ D ++GIT + P+ +T QL+ T++ D +A+ ++ + SFVP+S + YLI ER + K +Q ++GVSP TYW + D+ + + V G+V+ IF IG +YTS N P ++ L+ Y A ++Y LF PS + + CAN+ G+ T IL++ + + VL + + P + LG GL+ LA + +++ + P W ++G N+ + +E VV+FL L+++ + + +W+ + T P ED+DVA ERQR+ G D+L L +TK + AVD + VG++ GECFG LG+NGAGK+TTFK+LTG+ T+G + L MGYCPQ +++D LLT RE L +Y ++RG+ + EK+ N S+ LGL G SGG KRK+ A+A +G P L+L+DEPT+GMD +R +W I + GR+V++TSHSMEECE LCTRL IM G F+C+G+ +K KFG+G+ + + K+ K + F FP + +RH+N + F V SL+ I+ +L ++ L IE+ +V++T+LD+VFVNFA++++ + P
Sbjct: 1611 TEDNIKVWFNNKGWHALVSFLNVAHNAILRASL-PKDRSPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFSMSFVPASFVLYLIQERVNKSKHLQFISGVSPTTYWVTNFLWDI---MNYSVSAGLVVGIF-IGFQKKAYTSPENLPALVALLLLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFILELFENNRTLLRFNAVLRKLLIVFPHFCLGRGLIDLALSQAVTDVY--ARFGEEHSANPFHWDLIGKNLFAMVVEGVVYFLLTLLVQRHFFLSQWI-AEPTKEPI-----VDEDDDVAEERQRIITGGNKTDILRLHELTKIYPGTSSP--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISEVHQNMGYCPQFDAIDELLTGREHLYLYARLRGVPAEEIEKVANWSIKSLGLTVYADCLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNVIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFRCMGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQRERHYNMLQFQVSSSSLARIFQLLLSHKDSLLIEEYSVTQTTLDQVFVNFAKQQTESHDLP 2259 HSP 2 Score: 153.295 bits (386), Expect = 4.982e-37 Identity = 104/358 (29.05%), Postives = 171/358 (47.77%), Query Frame = 0
Query: 399 LSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVA-----------SSVAF----------------LYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQ------------------ALLGIEDVNVSKTSLDEVFVNFAEKKSHG 702
+ N+ K F R AVD +++ + +LG NGAGK+TT ILTG L PT+G L+ +G CPQ N + LTV E + Y Q++G +++ + + D GL + + +LSGG +RK+ A+AF+GD K++++DEPTSG+D ++R +W + + +GR++IM++H M+E + L R+ I+A G+ C G+P +K FG G ++ L K + + SS F L ++++ HH V+C +I+ +LPN+ A LG+ +S T L+E+F+ E G
Sbjct: 931 VKNLVKIFEPCGRP--AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGRDIETSLDAVRQSLGMCPQHNILFHHLTVAEHMLFYAQLKGKSQEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVILDEPTSGVDPYSRRSIWDLLLK-YRSGRTIIMSTHHMDEADLLGDRIAIIAQGRLYCSGTPLFLKNCFGTGLYLTLVRKMKNIQSQRKGSEGTCSCSSKGFSTTCPAHVDDLTPEQVLDGDVNELMDVVLHHVPEAKLVECIGQELIF--LLPNKNFKHRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDSDSG 1283
BLAST of abca2 partial vs. SwissProt
Match: gi|341940621|sp|P41233.4|ABCA1_MOUSE (RecName: Full=ATP-binding cassette sub-family A member 1; AltName: Full=ATP-binding cassette transporter 1; Short=ABC-1; Short=ATP-binding cassette 1) HSP 1 Score: 422.55 bits (1085), Expect = 6.846e-128 Identity = 242/661 (36.61%), Postives = 379/661 (57.34%), Query Frame = 0
Query: 59 FLGG--TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVE-YPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSV-AFLYARFPSILNLKRHHNTITFNV--QCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGE 703
F+ G T+ N+ VW+NNKG HA+ S+LN ++NA+LRA ++ + SQ+GIT FNHP+ +T QL+ ++ D+ +++ ++ A SFVP+S + +LI ER + K +Q ++GV PV YW + D+ + + I+ F SY S N P + +L+ Y + T L+Y +F PS +++ N+ G+ + T +L+ L+ ++L +FL P + LG GL+ + N + D++E + NR+ PLSW ++G N+ +A+E VVFFL ++++Y+ R RP + P EDEDV ERQR+ +G D+L + +TK + R +R AVD + +GI GECFG LG+NGAGKSTTFK+LTG+ T G LN L MGYCPQ +++ LLT RE ++ + +RG+ ++ K+ ++ LGL N SGG KRK+ A+A +G P ++ +DEPT+GMD +R +W V+ GRSV++TSHSMEECE LCTR+ IM +G+F+CLGS +K +FG+G+ I + V F FP + ++H N + + + SL+ I+ + ++ L IED +VS+T+LD+VFVNFA+ +S +
Sbjct: 1580 FMAGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQKGE-NPSQYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLE-LFTNNKLNDINDILKSVFLIFPHFCLGRGLIDMVKN---QAMADALERFGENRFVSPLSWDLVGRNLFAMAVEGVVFFLITVLIQYRFFIR-PRPVKAKLPP----LNDEDEDVRRERQRILDGGGQNDILEIKELTKIYRR--KRKPAVDRICIGIPPGECFGLLGVNGAGKSTTFKMLTGDTPVTRGDAFLNKNSILSNIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYASNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQEFFGLAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNFAKDQSDDD 2228 HSP 2 Score: 141.739 bits (356), Expect = 2.442e-33 Identity = 97/342 (28.36%), Postives = 175/342 (51.17%), Query Frame = 0
Query: 414 VAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLD-SQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFK-------ARKFVASSVAFL-----YARFPSILNLKRHHNTITFNVQCRSLSVI-------------YGH----ILPNQAL------------------LGIEDVNVSKTSLDEVFVNFAEK 698
VAVD +++ G+ +LG NGAGK+TT ILTG PT+G +++ +G CPQ N + +LTV E + Y +++G+ + + + + +D+GL S+ + LSGG +RK+ A+AF+G K++++DEPT+G+D ++R +W + + GR++I+++H M+E + L R+ I++ GK C+GS +K + G G+++ L K + + +S+V+ L ++ S L H + T + ++S + GH +LP +A LGI +S+T+L+E+F+ AE+
Sbjct: 914 VAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSSIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVGLPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLK-YRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLSSCRNSSSTVSCLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDIGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEE 1254
BLAST of abca2 partial vs. SwissProt
Match: gi|308153644|sp|O95477.3|ABCA1_HUMAN (RecName: Full=ATP-binding cassette sub-family A member 1; AltName: Full=ATP-binding cassette transporter 1; Short=ABC-1; Short=ATP-binding cassette 1; AltName: Full=Cholesterol efflux regulatory protein) HSP 1 Score: 421.009 bits (1081), Expect = 2.554e-127 Identity = 239/655 (36.49%), Postives = 378/655 (57.71%), Query Frame = 0
Query: 63 TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVE-YPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVA-FLYARFPSILNLKRHHNTITFNV--QCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGE 703
T+ N+ VW+NNKG HA+ S+LN ++NA+LRA ++ + S +GIT FNHP+ +T QL+ ++ D+ +++ ++ A SFVP+S + +LI ER + K +Q ++GV PV YW + D+ + + I+ F SY S N P + +L+ Y + T L+Y +F PS +++ N+ G+ + T +L+ L+ ++L +FL P + LG GL+ + N + D++E + NR+ PLSW ++G N+ +A+E VVFFL ++++Y+ ++RP+ S + EDEDV ERQR+ +G D+L + +TK + R +R AVD + VGI GECFG LG+NGAGKS+TFK+LTG+ T G LN L MGYCPQ +++ LLT RE ++ + +RG+ ++ K+ ++ LGL GN SGG KRK+ A+A +G P ++ +DEPT+GMD +R +W V+ GRSV++TSHSMEECE LCTR+ IM +G+F+CLGS +K +FG+G+ I + V F FP + ++H N + + + SL+ I+ + ++ L IED +VS+T+LD+VFVNFA+ +S +
Sbjct: 1586 TKNNVKVWFNNKGWHAISSFLNVINNAILRANLQKGE-NPSHYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLE-LFTDNKLNNINDILKSVFLIFPHFCLGRGLIDMVKN---QAMADALERFGENRFVSPLSWDLVGRNLFAMAVEGVVFFLITVLIQYRF---FIRPRPVNAKLSPL--NDEDEDVRRERQRILDGGGQNDILEIKELTKIYRR--KRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTRGDAFLNKNSILSNIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQDFFGLAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNFAKDQSDDD 2228 HSP 2 Score: 144.436 bits (363), Expect = 3.237e-34 Identity = 97/342 (28.36%), Postives = 176/342 (51.46%), Query Frame = 0
Query: 414 VAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQE-SIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFK-------ARKFVASSVAFL-----YARFPSILNLKRHHNTITFNVQCRSLSVI-------------YGH----ILPNQAL------------------LGIEDVNVSKTSLDEVFVNFAEK 698
VAVD +++ G+ +LG NGAGK+TT ILTG PT+G +++ +G CPQ N + +LTV E + Y +++G+ + + + + +D+GL S + + LSGG +RK+ A+AF+G K++++DEPT+G+D ++R +W + + GR++I+++H M+E + L R+ I++ GK C+GS +K + G G+++ L K + + +S+V++L ++ S L H + T + ++S + GH +LP +A LGI +S+T+L+E+F+ AE+
Sbjct: 914 VAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVGLPSSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLK-YRQGRTIILSTHHMDEADVLGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLSSCRNSSSTVSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDIGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEE 1254
BLAST of abca2 partial vs. SwissProt
Match: gi|269849713|sp|Q86UK0.3|ABCAC_HUMAN (RecName: Full=ATP-binding cassette sub-family A member 12; AltName: Full=ATP-binding cassette transporter 12; Short=ATP-binding cassette 12) HSP 1 Score: 402.905 bits (1034), Expect = 4.237e-121 Identity = 242/723 (33.47%), Postives = 400/723 (55.33%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWS--LATSSPESAFLGGTQENLV---VWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQ-------AREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDS--VEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHY----------QLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVA-FLYARFPSILNLKRHHNTITFNVQCRSLSV--IYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGE 703
PP S+ V++++T Q N ++++T +F+ +R+GGWS L + + G N VWY+ +G H+LP+YLN+++N +LR + D A++ GI ++HP Q AT I ++ DI +A+ +L +S +S + Y++ E + KQ+Q ++G+ YW I D+ L + + ++ IF + ++ S+ N V +L+ + A+ + +Y L LF E + + +C N+ G+ +++ L V+Y + + E L IFL P + G GL+ L+ + + VEYP+ ++ LG + L + +FF L++ LI++ R N + EDEDV ER RV +G DL+ L +TK + + ++I+AV+++S+GI AGECFG LG+NGAGK+T FK+LTG++ P++G+ ++ +L+GYCPQE+++D L+TV E L Y +V GI +D ++ ++K + L L + S GTKRK+ A+A +G P ++L+DEP+SGMD +KRH+W+ I +V+N SVI+TSHSMEECE LCTRL IM +GKFQC+GS IK +FG GF + + K K ++ F+ FP +H + + ++V + V I+ + N+ L I + VS+T+L+EVF+NFA+ + E
Sbjct: 1863 PPHRRTYSSQVIYNLTGQRVEN-YLISTANEFVQKRYGGWSFGLPLTKDLRFDITGVPANRTLAKVWYDPEGYHSLPAYLNSLNNFLLRVNMSKYD--AARHGIIMYSHPYPGVQDQEQAT--ISSLIDILVALSILMGYSVTTASFVTYVVREHQTKAKQLQHISGIGVTCYWVTNFIYDMVFYLVPVAFSIGIIAIFKLPAFYSENNLGAVSLLLLLFGYATFSWMYLLAGLFHETGMAFITYVCVNLFFGINSIVS---LSVVYFLSKEKPNDPTLELISETLKRIFLIFPQFCFGYGLIELSQQQSVLDFLKAYGVEYPNETFE----MNKLGAMFVALVSQGTMFFSLRLLINESLIKKLRLFFRKFNSSHVRETIDEDEDVRAERLRVESGAAEFDLVQLYCLTKTYQLIHKKIIAVNNISIGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILIRNKTGSLGHVDSHSSLVGYCPQEDALDDLVTVEEHLYFYARVHGIPEKDIKETVHKLLRRLHLMPFKDRATSMCSYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKRHLWKIISEEVQNKCSVILTSHSMEECEALCTRLAIMVNGKFQCIGSLQHIKSRFGRGFTVKVHLKNNKVTMETLTKFMQLHFPKTYLKDQHLSMLEYHVPVTAGGVANIFDLLETNKTALNITNFLVSQTTLEEVFINFAKDQKSYE 2573 HSP 2 Score: 147.132 bits (370), Expect = 5.903e-35 Identity = 80/262 (30.53%), Postives = 139/262 (53.05%), Query Frame = 0
Query: 386 QRVNGQTTGDLLWLSNVTKE------------FTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSE--KIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFK 624
Q N + + ++ SN+ E T++ VAVD++++ G LG NGAGK+TT +LTG +AG L+ MG C Q + + + LT +E L +Y ++ W + + + +++ D GL S R G LSGG KRK+ ++A +G +++++DEP++G+D ++R +W I + + R++I+++H ++E E L R+ + G +C GSP +KE FG+G+H+ LT K
Sbjct: 1319 QNTNPSASPEYMFSSNIEPEPKDLTVGVALHGVTKIYGSKVAVDNLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGASAGTIFVYGKDIKTDLHTVRKNMGVCMQHDVLFSYLTTKEHLLLYGSIKVPHWTKKQLHEEVKRTLKDTGLYSHRHKRVGTLSGGMKRKLSISIALIGGSRVVILDEPSTGVDPCSRRSIWDVISKN-KTARTIILSTHHLDEAEVLSDRIAFLEQGGLRCCGSPFYLKEAFGDGYHLTLTKK 1579
BLAST of abca2 partial vs. SwissProt
Match: gi|81912033|sp|Q7TNJ2.1|ABCA7_RAT (RecName: Full=ATP-binding cassette sub-family A member 7) HSP 1 Score: 383.645 bits (984), Expect = 1.830e-114 Identity = 226/649 (34.82%), Postives = 370/649 (57.01%), Query Frame = 0
Query: 63 TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPT------AGHYQLNPPGTL---MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQ----CRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAE 697
+ +L +W+NNKG HA+ +++N +N +LRA + S + + ITT NHP+ +T QL+ T+I + D+ +++ ++ A SFVP+S LI ER R K +QLV+G+ YW + D+ L + + ++ F +Y + N P +L+L+ Y + T L+Y F+ PS +++ C N+ G+ + T +L++L + + ++ +L +FL P + LG GL+ + N + F+ + +++ PL W ++G N+L + + +F L L+L+++ L PQ + +G EDEDV ER+RV G T GD+L L ++TK + R QR AVDH+ +GI GECFG LG+NGAGK++TF+++TG+ P+ AGH P MGYCPQ +++ LLT RE L+++ ++RG+ + ++ LGL S G SGG KRK+ A+A +GDP ++ +DEPT+GMD +R +W + V GRSV++TSHSMEECE LCTRL IM +G+F+CLGS +K +FG G + L + ++AF+ FP + H + + F + C +L+ ++ + G+ED +VS+T+L+EVF+ F++
Sbjct: 1492 ARNSLKIWFNNKGWHAMVAFVNRANNGLLRAFLPSGSVRHAH-SITTLNHPLNLTKEQLSEATLIASSVDVLVSICVVFAMSFVPASFTLVLIEERITRAKHLQLVSGLPQTLYWLGNFLWDMCNYLVAVCIVVLIFLAFQQKAYVAPENLPALLLLLLLYGWSITPLMYPASFFFSVPSTAYVVLTCINLFIGINSSMATFVLELL-SDQNLQEVSRILKQVFLIFPHFCLGRGLIDMVRNQAMADAFERLG--DKQFQSPLRWDIIGKNLLAMVAQGPLFLLITLLLQHR---NRLLPQPKSRLPPPLGE--EDEDVVRERERVTKGATQGDVLVLRDLTKVY-RGQRS-PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRFGAGHTLTLRVPPDQ-PEPAIAFIVTTFPDAELREVHGSRLRFQLPPGGGC-TLARVFRELAAQGKAHGVEDFSVSQTTLEEVFLYFSK 2127 HSP 2 Score: 127.872 bits (320), Expect = 6.650e-29 Identity = 70/224 (31.25%), Postives = 125/224 (55.80%), Query Frame = 0
Query: 415 AVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG-------HYQLNPPGTL--MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFV 629
A+ +++ G +LG NGAGK+TT IL+G P++G Q N +G CPQ N + +LTV E + Y +++G+ + + D+GL + + +LSGG +RK+ A+AF+G ++++MDEPT+G+D ++R +W + + E GR++I+++H ++E E L R+ ++A G C GSP ++ G G+++ L ++ V
Sbjct: 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYRE-GRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLFLRRHLGCGYYLTLVKSSQSLV 1043
BLAST of abca2 partial vs. SwissProt
Match: gi|81916062|sp|Q91V24.1|ABCA7_MOUSE (RecName: Full=ATP-binding cassette sub-family A member 7) HSP 1 Score: 380.563 bits (976), Expect = 2.115e-113 Identity = 226/659 (34.29%), Postives = 374/659 (56.75%), Query Frame = 0
Query: 63 TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQL---------NPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNV----QCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENPR 707
+ +L +W+NNKG HA+ +++N +N +L A + S + + ITT NHP+ +T QL+ T+I + D+ +++ ++ A SFVP+S LI ER R K +QLV+G+ YW + D+ L + + + F +Y + N P +L+L+ Y + T L+Y F+ PS +++ C N+ G+ + T +L++L + + ++ +L +FL P + LG GL+ + N + F+ + +++ PL W ++G N+L + + +F L L+L+++ L PQ +G EDEDVA ER+RV G T GD+L L ++TK + R QR AVD + +GI GECFG LG+NGAGK++TF+++TG+ P++G L + MGYCPQ +++ LLT RE L+++ ++RG+ + ++ LGL S G SGG KRK+ A+A +GDP ++ +DEPT+GMD +R +W ++ V GRSV++TSHSMEECE LCTRL IM +G+F+CLGS +K +FG G + L + ++AF+ FP + H + + F + +C +L+ ++ + G+ED +VS+T+L+EVF+ F++ + EE+ R
Sbjct: 1481 ARNSLKIWFNNKGWHAMVAFVNRANNGLLHALLPSGPVRHAH-SITTLNHPLNLTKEQLSEATLIASSVDVLVSICVVFAMSFVPASFTLVLIEERITRAKHLQLVSGLPQTLYWLGNFLWDMCNYLVAVCIVVFIFLAFQQRAYVAPENLPALLLLLLLYGWSITPLMYPASFFFSVPSTAYVVLTCINLFIGINSSMATFVLELL-SDQNLQEVSRILKQVFLIFPHFCLGRGLIDMVRNQAMADAFERLG--DKQFQSPLRWDIIGKNLLAMMAQGPLFLLITLLLQHR---NRLLPQSKPRLLPPLGE--EDEDVAQERERVTKGATQGDVLVLRDLTKVY-RGQRN-PAVDRLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQERSAAHRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNSLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSSQHLKGRFGAGHTLTLRVPPDQ-PEPAIAFIRITFPGAELREVHGSRLRFQLPPGGRC-TLTRVFRELAAQGRAHGVEDFSVSQTTLEEVFLYFSKDQGEEEESSR 2126 HSP 2 Score: 127.102 bits (318), Expect = 9.495e-29 Identity = 70/224 (31.25%), Postives = 125/224 (55.80%), Query Frame = 0
Query: 415 AVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG-------HYQLNPPGTL--MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFV 629
A+ +++ G +LG NGAGK+TT IL+G P++G Q N +G CPQ N + +LTV E + Y +++G+ + + D+GL + + +LSGG +RK+ A+AF+G ++++MDEPT+G+D ++R +W + + E GR++I+++H ++E E L R+ ++A G C GSP ++ G G+++ L ++ V
Sbjct: 820 ALQGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAMGPERERLIRDVGLTLKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYRE-GRTLILSTHHLDEAELLGDRVAMVAGGSLCCCGSPLFLRRHLGCGYYLTLVKSSQSLV 1042
BLAST of abca2 partial vs. nr
Match: gi|1160141874|ref|XP_020372191.1| (retinal-specific ATP-binding cassette transporter-like isoform X2 [Rhincodon typus]) HSP 1 Score: 445.662 bits (1145), Expect = 1.068e-143 Identity = 239/651 (36.71%), Postives = 379/651 (58.22%), Query Frame = 0
Query: 69 VWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHY---------QLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVAS-----SVAFLYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705
VW+NNKG HA+ +++N +NA+LRA + A +GIT NHP+ +T QL+ T++ D I++ ++ A SFVP+S + YLI ER K +Q V+G S TYW + D+ V+ ++ F +YTS N P + L+ FY A T ++Y +F+ PS + + C N+ G+ T IL++ +A + ++L I + P + LG GL+ +A N +++ + + Y P W +G N+ +A+E VV+FL NL+++++ L P S + A ED+DVA ER+R+ G D+L + +TK ++ R AVD +SVG++ GECFG LG+NGAGK+TTFK+LTG+++PT+G ++ MGYCPQ +++D LT RE L +Y ++RGI + E++ N + L L G SGG KRK+ A+A +G P ++L+DEPT+GMD ++R +W + + GR+V++TSHSMEECE LCTRL IM +G+F+CLG+ +K KFG+G+ + L K + AS + F + FP L +++HHN I + + SLS I+ ++ N+ L I++ +VS+T+LD+VFVNFA++++ + N
Sbjct: 7 VWFNNKGWHAIVAFMNVANNAILRANLPEHHY-AEDYGITVINHPLNLTKEQLSEVTVLTTSLDAVISISVVFAMSFVPASFVLYLIQERVSNAKHLQFVSGTSHTTYWVSNFLWDMCNYSVTTVMVVLIFIGFNKKAYTSPQNLPAFIALLLFYGWAVTPMMYPASFVFSVPSTAYVALSCINLFIGINGSAATFILELFENNRALQMFNKILKNILIIFPHFCLGRGLIDMAMNQAVTDVY--ARFGEDFYFSPFHWEFVGKNLTAMAVEGVVYFLLNLIIQHRFFLTNLPPI-----LSNLPAIEEDDDVAKERERIRGTGKHDILKIKELTKYYSGRNRP--AVDRISVGVRPGECFGLLGVNGAGKTTTFKMLTGDIDPTSGEASVAGYSIFTHIDDVHQNMGYCPQFDAIDDFLTGREHLLLYARLRGIPEDEIEQVANWGIEKLDLAEYADQTAGTYSGGNKRKLSTAIALIGCPPVVLLDEPTTGMDPKSRRFLWNCLLSVIREGRAVVLTSHSMEECEALCTRLAIMVNGQFKCLGTIQHLKYKFGDGYVVTLKIKGTQPGASPDLNPAEEFFKSNFPDSLQIEKHHNMIQYQLSSSSLSKIFQLLISNKEQLKIDEYSVSQTTLDQVFVNFAKQQTAEDNN 647
BLAST of abca2 partial vs. nr
Match: gi|1160136349|ref|XP_020392807.1| (ATP-binding cassette sub-family A member 2, partial [Rhincodon typus]) HSP 1 Score: 461.455 bits (1186), Expect = 2.039e-143 Identity = 256/720 (35.56%), Postives = 402/720 (55.83%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGW-----------SLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEF-TRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCR--SLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEE 704
PP+ + + D+L DIT + + + +IL+T +F R+GG S +T + + +YNNKG H++P+YLN ++NA+LRA + + + +GIT NHP+ T+ L+ ++Q D+ IA+ ++ A SFVP+S + +L+ E++ + K +Q V+G PV YW + D+ L I+L +F + +YTS NFP VL L Y + T ++Y F PS + ++ N+ G+ + T +L + K + L FL P+Y+LG GL+ +A N NE + + + K P W ++ ++ + +E V F ++ +Y ++ PQR P S +D DV ER+RV G D+L + N+TK + +R RI+AVD + G++ GECFG LG+NGAGK+TTFK+LTG+ T G +N L +GYCPQ +++ LT RE +++Y ++RG+ W+D E++IN ++ L L G SGG KRK+ A+A +G P LI +DEPT+GMD +R +W I ++ GRSV++TSHSMEECE LCTRL IM +G+F+CLGS +K +FG+G+ I + KA +V V F FP + +RHH + + ++ SL+ ++ + +LGIED +VS+T+LD VFVNFA+K+S E
Sbjct: 507 PPQKKVVTGDILVDITGR-NVSEYILHTSDRFRLHRYGGLTFGNVLKSIPASFSTKAAPMVRKIAVRRTAQAFYNNKGYHSMPTYLNTLNNAILRANLPKSKGNPAGYGITVTNHPMNKTSASLSLDYLLQGT-DVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCDPVIYWLANYVWDMLNYLVPATCCIIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSTAYVFLIVINLFIGITATVATFLLQLFEHDKDLKAVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYYAKIGQ-FGKMKSPFEWDIVTRGLVAMTIEGFVGFFITIMCQYNFFRK---PQRL--PVSNKPIEDDDIDVGNERRRVLRGDADTDVLKIQNLTKVYKSRRMGRILAVDRLCTGVRPGECFGLLGVNGAGKTTTFKMLTGDESTTGGEAFVNGNSILKDLLKVQQSIGYCPQFDALFDELTAREHMELYTRLRGVPWKDEERVINWALDKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPSLIFLDEPTTGMDPKARRFLWNLILDIIKTGRSVVLTSHSMEECEALCTRLAIMVNGRFKCLGSIQHLKNRFGDGYMITVRTKASLYVKEVVRFFNRNFPEAVLKERHHTKVQYQLKSENISLAQVFSKMEQVVDVLGIEDYSVSQTTLDNVFVNFAKKQSDNLE 1218
BLAST of abca2 partial vs. nr
Match: gi|736303158|ref|XP_010793845.1| (PREDICTED: retinal-specific ATP-binding cassette transporter-like [Notothenia coriiceps]) HSP 1 Score: 443.351 bits (1139), Expect = 1.014e-142 Identity = 249/664 (37.50%), Postives = 394/664 (59.34%), Query Frame = 0
Query: 69 VWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLA-VTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKL-IQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRC-GNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVAS-----SVAFLYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENPRLGRVNPG 714
VWYNNKG HA+ +++N +NA+LRA + + + +FGIT NHP+ +T QL+ T++ D +A+ ++ A SF+P+S + YLI ER + K +Q V+GVSPV YW D+ +L+ +V GI L F YTS +N P ++ L+ Y + T L+Y + +F PS + + C N+ G+ T IL++ + E L L P + LG GL+ +A N +++ + + P W +G N+ +A+E VFF+ NL+++Y+ + W T P +T+ EDEDVA ERQRV +G + D+L + +++K T V R+ AVD + VG+ AGECFG LG+NGAGK+TTFK+LTG+ + ++G + L MGYCPQ ++D LLT RE L +Y ++RG+ + ++ + LGL ++ + RC G SGG KRK+ A+A +G P L+L+DEPT+GMD ++R +W I +++GR+V++TSHSMEECE LCTRL IM +G F+CLG+ +K KFG+G+ + + KA + S +F+ + FP + ++H+NT+ + + SL+ I+ ++ N+ L IED +VS+T+LD+VFVNFA++++ +E+ L + G
Sbjct: 22 VWYNNKGWHAMVAFMNVANNAILRAFLPPSS-KPMEFGITAINHPLNLTKEQLSEITVLNTSVDAVVAICVIFAMSFIPASFVLYLIQERVTKAKHLQFVSGVSPVVYWVANFFWDMVNYSLSTALVVGIFLA-FDKKCYTSPSNLPALITLLLLYGWSVTPLMYPMSYIFDIPSTAYVSLSCINLFIGINSSAITFILELFENNLSLLMFNEWLKKGLLLFPHFCLGRGLIDMAMNQAVTDVY--ARFGEEFTQDPFRWDFVGKNIAFMAVEGFVFFILNLLIQYRFFMDNWF----TKCPQTTV--RDEDEDVAAERQRVYDGASKTDILQIRDLSK--TYVGRKRAAVDRICVGVPAGECFGLLGVNGAGKTTTFKMLTGDSDVSSGEATVAGYSILTEILDVHQNMGYCPQFEAIDELLTGREHLYLYARLRGVPECEIPRVAEWGIQKLGL-TEYAGRCAGTYSGGNKRKLSTAIAMIGCPALVLLDEPTTGMDPHSRRFLWNAIMSVIQDGRAVVLTSHSMEECEALCTRLAIMVNGTFKCLGTIQHLKYKFGDGYVVTMKMKAARAGVSLDLEPVESFMESSFPGCVQREKHYNTLQYEIASSSLARIFQVVVANKERLSIEDYSVSQTTLDQVFVNFAKQQTAEDEDATLNKRTAG 672
BLAST of abca2 partial vs. nr
Match: gi|1026574355|gb|OAD61200.1| (ATP-binding cassette sub-family A member 13 [Eufriesea mexicana]) HSP 1 Score: 467.618 bits (1202), Expect = 8.738e-141 Identity = 264/679 (38.88%), Postives = 399/679 (58.76%), Query Frame = 0
Query: 32 WILNTHKQFLDQRFGGWSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQL--NPPGT------LMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQALLGIE----DVNVSKTSLDEVFVNFAEK 698
WI++TH++++++R+GGWSL ++ E F VVWYNNKG HALPSYL+A++ A+LRA+ Q ITT NHP+ +++ QL TT++Q+VAD+G+A++LL AF+ V + L+ ER EK++ +AGV PVTYWT LI D V I + ++ +IFG+ +Y ++ N PG+ +L+F + A+ + EK+F + S+ +++ C N G+ L T ++LD+L K A R +LH I L +P Y+LG+ L+ ++ N IT +L + ++ + Y+ PLSW +LG + + LA V F NLV+E +L+ W R QR P T T ED+DV +ER RV G + D+L + KE+ V VAV ++S+G+QAG+CFG LG NGAGKSTTF++LT E+ PTAG L N G+ +GYCPQ + +D L+ + L ++ +V G+ + K + + L L R NLSGG KRK+C A++ + ++LMDEPTSGMD TK V +TI+R +N VI+TSHS+ ECE+LCTR+ I+A +C+G+P +K KFGEG+ L F+ + FP + R + + RS + LL E D ++++SLD+V VNF+E+
Sbjct: 3350 WIVSTHQEYIEKRYGGWSLFHANEEPLF--------VVWYNNKGHHALPSYLSALNEAILRAS-------GVQGRITTLNHPLKLSSDQLNRTTLLQHVADVGVALVLLIAFNLVAAQGSKELVRERLSEEKRILFLAGVHPVTYWTTVLIWDFFVFGCSIGLAVVIFEIFGLSAYVARDNLPGICLLLFLFAWAALPFSHLTEKVFDDSSMSNMVLFCVNTFIGVSSLATILVLDILGRTKTAEDVRNILHNILLILPQYALGDALVQISRNDITAQLLE--KFHMDTYQSPLSWELLGLHYVFLAFVGAVLFSLNLVVECRLLPSWKR-QRC--PYET---TEEDDDVLMERMRVEGGMSDDILQTVKLRKEYRSVYGTNVAVQNLSIGVQAGKCFGLLGTNGAGKSTTFRMLTTEVIPTAGRIILKGNEIGSGPLCNGEVGYCPQSDGLDGFLSPHQCLTIHGEVCGL--SNVPKAVESVLKRLDLLKYAHKRVSNLSGGNKRKLCTALSVMAPVPVVLMDEPTSGMDPATKDLVAKTIRRMTKNQSCVILTSHSVAECENLCTRVGILAKAGLRCIGTPQHLKHKFGEGYVAFLRFRQPISSTDLKKAIAKCFPQAVVSTRQASAARLLIP-RSQDMPVSSSFNKLKLLAEELKATDYTLTQSSLDQVLVNFSEE 4002 HSP 2 Score: 160.999 bits (406), Expect = 6.307e-37 Identity = 148/528 (28.03%), Postives = 234/528 (44.32%), Query Frame = 0
Query: 134 GIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFY-------CSAS----TTLVYCLEKLF---------AEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLF---VPSYSLGEGLLVLATNFITNELFDSVEYPSNRYK-----------PPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---MGYCPQENSVDTLLTVREMLKVYCQVRGIRWR-DSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTF 623
GI V A + + +++ ER + V V G+ P W + + + ++V + I +G K++ VLI+M Y CSAS TT+V L A LG +++C + + T+ LYA + Q L W ++ P S+ GL++L F L+ + Y +RY L WA + + + F+ NL + L P AT +DE+ VN + TG + V K + Q +VAVD ++ + GE LG NGAGK+T K+LTG L PT G LN +G CPQ+N + LT RE L Y +++ + + ++ +N+ + L L QE LSGGTKR++C A+AFLG PKL+++DEP +G+D +R +WR I + +++H ++E + L +V+M GK C GSP +K G G+ + ++F
Sbjct: 2590 GIQVCFFFALMMCVGAAVRHIVWERESQNAMVMSVMGLRP---WRNTMAWFITTFVELLIVMFSIAMILLVGKILPKSDPSVVLIMMIDYAFAIVTFCSASLAAITTVVMFLLTFMPYVIVIAMEAVIGLGYKLLICLS-------MSTSFCYGCLYAARKEVQGTG-LTWSAMWKESSPGDSMSLGLVLLMIAF-DGCLYAVIGYLISRYNNSGRGFHDLRSRSLWWA---DTRSLYGRPSYLTFVNNLYFTNDV----LHP----------SATYQDEESDASNLTVNEKQTG--VRFDGVRKVYHTDQGEVVAVDDFTLKLSEGEVTSLLGRNGAGKTTIIKMLTGMLAPTTGEICLNAEEGCKPDIGVCPQDNVLIGTLTPREHLIFYAKLKHPKEDVNMQRNVNEMLTSLELGRQEHEPVYRLSGGTKRRLCVALAFLGSPKLVILDEPGAGVDPAARRRIWRLIDQHR-------LSTHHLDEADILSDTVVVMHKGKILCTGSPLSLKVMHGRGYRLLVSF 3079
BLAST of abca2 partial vs. nr
Match: gi|999971553|gb|KXJ10727.1| (ATP-binding cassette sub-family A member 1 [Exaiptasia pallida]) HSP 1 Score: 467.233 bits (1201), Expect = 8.974e-141 Identity = 258/748 (34.49%), Postives = 417/748 (55.75%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSPE-SAFLGGTQE----------NLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQT--TGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHS--------------------MEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVA-FLYARFPSILNLKRHHNTITFNVQCRSLSV--IYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENPRLGRV 711
P +W S D+L ++T + P +L TH Q++ +R+GG + + P + + +Q+ N WY+NKG HALP+Y+N + N +LR + + +++GI+TFNHP+ T QL T I+ D+ +A+ ++ A SFVP+S + +L+ ER + K + +V+GV P YWT D+ L ++ ++ F SYTS NFP +L+ Y A T L+Y +F+ PS ++++CAN+ G+ L T IL++ + L IFL P+Y LG GL+ LA N ++F + N K P SW + G N++ + ++ VFF N+++EY+ +++ + N +T+ + ED+DV ER+RV T + D + L N+TK F + VAV+ + VG+ GECFG LG+NGAGK+TTFK+LTG+L T+G +N L MGYCPQ +++D LLT +E L +Y ++RG+ +K++ + + L + + G SGG KRK+ A+A +G+P ++ MDEPT+GMD +R +W I V+ GR+VI+TSH MEECE LC R+ IM +G+F+CLGSP +K K+G+G+ + L V+ F+ FP+ + +H N + + + + LSV ++G + N+ + IED +VS+T+LD+VF+NFA+ ++ G ++ R R+
Sbjct: 1705 PRQWTSYSGDILQNVTGRYIPEL-LLKTHDQYIRKRYGGITFGDNIPNLPSSIRESQDPVVKRMISYRNTKAWYDNKGYHALPTYVNVLSNNILRNKAKMKGLNPTEYGISTFNHPMNYTKEQLNDQTFIKQAVDVLVAICVVFALSFVPASFVVFLVNERATKAKHLHMVSGVRPYIYWTANYFWDMCSYLIPAIICVLIFLAFNDESYTSAMNFPPTFLLLLLYGWAVTPLMYPASYIFSVPSTAYIVMICANLFIGINCTLATFILEMFQDDQELIDINNSLKAIFLIFPNYCLGRGLIDLAKNQFM-DIFS--RFGQNLVKDPFSWDITGRNIMAMIIQGFVFFAINVLIEYRF---FIKQRPVKNVVNTL--SEEDDDVKQERRRVVSGTGSSTDAMRLVNLTKIFKVRSKVNVAVNQLCVGVSKGECFGLLGVNGAGKTTTFKMLTGDLPVTSGEAYVNGYSVLSEIHDAHQTMGYCPQFDALDELLTAKEHLYLYARLRGVPEAQIQKVVMSLIARMNLRQYQDVCAGKYSGGNKRKLSTAIALVGNPNIVFMDEPTTGMDPKARRFLWNIITSIVKEGRTVILTSHRRFALWSHLLQLPECFAHFLFMEECEALCNRVAIMVNGQFKCLGSPQHLKNKYGDGYTVVLRVAGPNPKTEQVSEFIKTVFPNAILKDQHLNMLEYQLPSQGLSVANVFGQLEANRKIFNIEDYSVSQTTLDQVFINFAKDQTDGIDDTRPKRL 2443 HSP 2 Score: 139.428 bits (350), Expect = 3.960e-30 Identity = 75/221 (33.94%), Postives = 126/221 (57.01%), Query Frame = 0
Query: 414 VAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKA 625
+AVD +++ + + +LG NGAGK+TT ILTG PT G ++ +G CPQ N + LTV + L Y ++G+ I K + D+GL+++ NLSGG KRK+ +AF+ K++++DEPT+G+D +R +W + + + GR+V++++H M+E + L R+ I++ GK QC GS +K +G G+++ LT K+
Sbjct: 1134 LAVDGLNLNLYENQITSFLGHNGAGKTTTMSILTGLYPPTHGTAVISGMDIRTDIDLVRKSLGMCPQYNVLFDQLTVEDHLWFYSSLKGMEKSKIPDEIEKFLKDIGLENKRHELACNLSGGMKRKLSVGMAFIAGSKVVILDEPTAGVDPYARRGIWDLLLK-YKPGRTVLLSTHHMDEADVLGDRIAIISQGKLQCCGSSLFLKGHYGNGYYLTLTKKS 1353
BLAST of abca2 partial vs. nr
Match: gi|1059207766|ref|XP_017766405.1| (PREDICTED: uncharacterized protein LOC108555334 isoform X1 [Eufriesea mexicana]) HSP 1 Score: 467.618 bits (1202), Expect = 9.533e-141 Identity = 264/679 (38.88%), Postives = 399/679 (58.76%), Query Frame = 0
Query: 32 WILNTHKQFLDQRFGGWSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQL--NPPGT------LMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQALLGIE----DVNVSKTSLDEVFVNFAEK 698
WI++TH++++++R+GGWSL ++ E F VVWYNNKG HALPSYL+A++ A+LRA+ Q ITT NHP+ +++ QL TT++Q+VAD+G+A++LL AF+ V + L+ ER EK++ +AGV PVTYWT LI D V I + ++ +IFG+ +Y ++ N PG+ +L+F + A+ + EK+F + S+ +++ C N G+ L T ++LD+L K A R +LH I L +P Y+LG+ L+ ++ N IT +L + ++ + Y+ PLSW +LG + + LA V F NLV+E +L+ W R QR P T T ED+DV +ER RV G + D+L + KE+ V VAV ++S+G+QAG+CFG LG NGAGKSTTF++LT E+ PTAG L N G+ +GYCPQ + +D L+ + L ++ +V G+ + K + + L L R NLSGG KRK+C A++ + ++LMDEPTSGMD TK V +TI+R +N VI+TSHS+ ECE+LCTR+ I+A +C+G+P +K KFGEG+ L F+ + FP + R + + RS + LL E D ++++SLD+V VNF+E+
Sbjct: 3369 WIVSTHQEYIEKRYGGWSLFHANEEPLF--------VVWYNNKGHHALPSYLSALNEAILRAS-------GVQGRITTLNHPLKLSSDQLNRTTLLQHVADVGVALVLLIAFNLVAAQGSKELVRERLSEEKRILFLAGVHPVTYWTTVLIWDFFVFGCSIGLAVVIFEIFGLSAYVARDNLPGICLLLFLFAWAALPFSHLTEKVFDDSSMSNMVLFCVNTFIGVSSLATILVLDILGRTKTAEDVRNILHNILLILPQYALGDALVQISRNDITAQLLE--KFHMDTYQSPLSWELLGLHYVFLAFVGAVLFSLNLVVECRLLPSWKR-QRC--PYET---TEEDDDVLMERMRVEGGMSDDILQTVKLRKEYRSVYGTNVAVQNLSIGVQAGKCFGLLGTNGAGKSTTFRMLTTEVIPTAGRIILKGNEIGSGPLCNGEVGYCPQSDGLDGFLSPHQCLTIHGEVCGL--SNVPKAVESVLKRLDLLKYAHKRVSNLSGGNKRKLCTALSVMAPVPVVLMDEPTSGMDPATKDLVAKTIRRMTKNQSCVILTSHSVAECENLCTRVGILAKAGLRCIGTPQHLKHKFGEGYVAFLRFRQPISSTDLKKAIAKCFPQAVVSTRQASAARLLIP-RSQDMPVSSSFNKLKLLAEELKATDYTLTQSSLDQVLVNFSEE 4021 HSP 2 Score: 164.466 bits (415), Expect = 4.310e-38 Identity = 145/529 (27.41%), Postives = 233/529 (44.05%), Query Frame = 0
Query: 134 GIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILS----------------GMILLL-----TTIILDVLYAIKAARQAREVLHWIFLF---VPSYSLGEGLLVLATNFITNELFDSVEYPSNRYK-----------PPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---MGYCPQENSVDTLLTVREMLKVYCQVRGIRWR-DSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTF 623
GI V A + + +++ ER + V V G+ P W + + + ++V + I +G K++ VLI+M Y A T Y + + + SL + + +L+ G LL+ T+ LYA + Q L W ++ P S+ GL++L F L+ + Y +RY L WA + + + F+ NL + L P AT +DE+ VN + TG + V K + Q +VAVD ++ + GE LG NGAGK+T K+LTG L PT G LN +G CPQ+N + LT RE L Y +++ + + ++ +N+ + L L QE LSGGTKR++C A+AFLG PKL+++DEP +G+D +R +WR I + +++H ++E + L +V+M GK C GSP +K G G+ + ++F
Sbjct: 2601 GIQVCFFFALMMCVGAAVRHIVWERESQNAMVMSVMGLRP---WRNTMAWFITTFVELLIVMFSIAMILLVGKILPKSDPSVVLIMMIDYAFAIVTFCYMISTMCSSASLAAITTVVMFLLTFMPYVIVIAMEAVIGLGYKLLICLSMSTSFCYGCLYAARKEVQGTG-LTWSAMWKESSPGDSMSLGLVLLMIAF-DGCLYAVIGYLISRYNNSGRGFHDLRSRSLWWA---DTRSLYGRPSYLTFVNNLYFTNDV----LHP----------SATYQDEESDASNLTVNEKQTG--VRFDGVRKVYHTDQGEVVAVDDFTLKLSEGEVTSLLGRNGAGKTTIIKMLTGMLAPTTGEICLNAEEGCKPDIGVCPQDNVLIGTLTPREHLIFYAKLKHPKEDVNMQRNVNEMLTSLELGRQEHEPVYRLSGGTKRRLCVALAFLGSPKLVILDEPGAGVDPAARRRIWRLIDQHR-------LSTHHLDEADILSDTVVVMHKGKILCTGSPLSLKVMHGRGYRLLVSF 3098
BLAST of abca2 partial vs. nr
Match: gi|1059207768|ref|XP_017766406.1| (PREDICTED: uncharacterized protein LOC108555334 isoform X2 [Eufriesea mexicana]) HSP 1 Score: 467.233 bits (1201), Expect = 1.119e-140 Identity = 264/679 (38.88%), Postives = 399/679 (58.76%), Query Frame = 0
Query: 32 WILNTHKQFLDQRFGGWSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQL--NPPGT------LMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQALLGIE----DVNVSKTSLDEVFVNFAEK 698
WI++TH++++++R+GGWSL ++ E F VVWYNNKG HALPSYL+A++ A+LRA+ Q ITT NHP+ +++ QL TT++Q+VAD+G+A++LL AF+ V + L+ ER EK++ +AGV PVTYWT LI D V I + ++ +IFG+ +Y ++ N PG+ +L+F + A+ + EK+F + S+ +++ C N G+ L T ++LD+L K A R +LH I L +P Y+LG+ L+ ++ N IT +L + ++ + Y+ PLSW +LG + + LA V F NLV+E +L+ W R QR P T T ED+DV +ER RV G + D+L + KE+ V VAV ++S+G+QAG+CFG LG NGAGKSTTF++LT E+ PTAG L N G+ +GYCPQ + +D L+ + L ++ +V G+ + K + + L L R NLSGG KRK+C A++ + ++LMDEPTSGMD TK V +TI+R +N VI+TSHS+ ECE+LCTR+ I+A +C+G+P +K KFGEG+ L F+ + FP + R + + RS + LL E D ++++SLD+V VNF+E+
Sbjct: 3322 WIVSTHQEYIEKRYGGWSLFHANEEPLF--------VVWYNNKGHHALPSYLSALNEAILRAS-------GVQGRITTLNHPLKLSSDQLNRTTLLQHVADVGVALVLLIAFNLVAAQGSKELVRERLSEEKRILFLAGVHPVTYWTTVLIWDFFVFGCSIGLAVVIFEIFGLSAYVARDNLPGICLLLFLFAWAALPFSHLTEKVFDDSSMSNMVLFCVNTFIGVSSLATILVLDILGRTKTAEDVRNILHNILLILPQYALGDALVQISRNDITAQLLE--KFHMDTYQSPLSWELLGLHYVFLAFVGAVLFSLNLVVECRLLPSWKR-QRC--PYET---TEEDDDVLMERMRVEGGMSDDILQTVKLRKEYRSVYGTNVAVQNLSIGVQAGKCFGLLGTNGAGKSTTFRMLTTEVIPTAGRIILKGNEIGSGPLCNGEVGYCPQSDGLDGFLSPHQCLTIHGEVCGL--SNVPKAVESVLKRLDLLKYAHKRVSNLSGGNKRKLCTALSVMAPVPVVLMDEPTSGMDPATKDLVAKTIRRMTKNQSCVILTSHSVAECENLCTRVGILAKAGLRCIGTPQHLKHKFGEGYVAFLRFRQPISSTDLKKAIAKCFPQAVVSTRQASAARLLIP-RSQDMPVSSSFNKLKLLAEELKATDYTLTQSSLDQVLVNFSEE 3974 HSP 2 Score: 163.31 bits (412), Expect = 1.131e-37 Identity = 138/506 (27.27%), Postives = 229/506 (45.26%), Query Frame = 0
Query: 134 GIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLV---LATNFITNELFDSVEYPSN---------RYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---MGYCPQENSVDTLLTVREMLKVYCQVRGIRWR-DSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTF 623
GI V A + + +++ ER + V V G+ P W + + + ++V + I +G K++ VLI+M Y A T Y + + + SL A I + ++ LLT + ++ A++A LG LL+ ++T+F L+ + + + P LG +L++A + ++ V+ Y LI R+ DE+ VN + TG + V K + Q +VAVD ++ + GE LG NGAGK+T K+LTG L PT G LN +G CPQ+N + LT RE L Y +++ + + ++ +N+ + L L QE LSGGTKR++C A+AFLG PKL+++DEP +G+D +R +WR I + +++H ++E + L +V+M GK C GSP +K G G+ + ++F
Sbjct: 2601 GIQVCFFFALMMCVGAAVRHIVWERESQNAMVMSVMGLRP---WRNTMAWFITTFVELLIVMFSIAMILLVGKILPKSDPSVVLIMMIDYAFAIVTFCYMISTMCSSASL-------AAITTVVMFLLTFMPYVIVIAMEAV----------------IGLGYKLLICLSMSTSFCYGCLYAARKEVQGTGLTWSAMWKESSPGDSMSLGLVLLMIAFDGCLY----AVIGY-LISRY---------------NNSDEESDASNLTVNEKQTG--VRFDGVRKVYHTDQGEVVAVDDFTLKLSEGEVTSLLGRNGAGKTTIIKMLTGMLAPTTGEICLNAEEGCKPDIGVCPQDNVLIGTLTPREHLIFYAKLKHPKEDVNMQRNVNEMLTSLELGRQEHEPVYRLSGGTKRRLCVALAFLGSPKLVILDEPGAGVDPAARRRIWRLIDQHR-------LSTHHLDEADILSDTVVVMHKGKILCTGSPLSLKVMHGRGYRLLVSF 3051
BLAST of abca2 partial vs. nr
Match: gi|20521748|dbj|BAA83014.2| (KIAA1062 protein, partial [Homo sapiens]) HSP 1 Score: 461.455 bits (1186), Expect = 2.496e-140 Identity = 256/721 (35.51%), Postives = 406/721 (56.31%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGG-----------WSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEF-TRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCR--SLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705
PP+ + + D+L DIT + + ++L T +F R+G S T +P + V+YNNKG H++P+YLN+++NA+LRA + + + +GIT NHP+ T+ L+ ++Q D+ IA+ ++ A SFVP+S + +L+ E++ + K +Q V+G +P+ YW + D+ L I+L +F + +YTS NFP VL L Y + T ++Y F PS + ++ N+ G+ + T +L + K + L FL P+Y+LG GL+ +A N NE + + ++ K P W ++ ++ +A+E VV FL ++ +Y ++R PQR P ST +D DVA ERQRV G D++ + N+TK + +R RI+AVD + +G++ GECFG LG+NGAGK++TFK+LTG+ T G +N L +GYCPQ +++ LT RE L++Y ++RGI W+D +++ ++ L L G SGG KRK+ A+A +G P I +DEPT+GMD +R +W I ++ GRSV++TSHSMEECE LCTRL IM +G+ +CLGS +K +FG+G+ I + K+ + V V F FP + +RHH + + ++ SL+ ++ + +LGIED +VS+T+LD VFVNFA+K+S E
Sbjct: 995 PPQMRVVTGDILTDITGH-NVSEYLLFTSDRFRLHRYGAITFGNVLKSIPASFGTRAPPMVRKIAVRRAAQVFYNNKGYHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLLQGT-DVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPIIYWLANYVWDMLNYLVPATCCVIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVINLFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYYAKIGQ-FDKMKSPFEWDIVTRGLVAMAVEGVVGFLLTIMCQYNFLRR---PQRM--PVST-KPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKELLQVQQSLGYCPQCDALFDELTAREHLQLYTRLRGISWKDEARVVKWALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQSVKDVVRFFNRNFPEAMLKERHHTKVQYQLKSEHISLAQVFSKMEQVSGVLGIEDYSVSQTTLDNVFVNFAKKQSDNLEQ 1706 HSP 2 Score: 143.665 bits (361), Expect = 1.672e-31 Identity = 83/261 (31.80%), Postives = 146/261 (55.94%), Query Frame = 0
Query: 377 EDEDVALERQRVNGQTTG-----DLLWLSNVTKEFTRVQR--RIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIAL 621
ED+ A+E +R +T G L L + T+V + + +A++ +S+ + + +LG NGAGK+TT ILTG PT+G +++ +G CPQ N + LTV E L Y +++ + + + ++K + DL L ++ LSGG KRK+ A+AF+G + I++DEPT+G+D +R +W I + + GR++++++H M+E + L R+ I++ GK +C GSP +K +G+G+ + L
Sbjct: 298 EDQACAMESRRFE-ETRGMEEEPTHLPLVVCVDKLTKVYKDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRREMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILK-YKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYRLTL 556
BLAST of abca2 partial vs. nr
Match: gi|701317446|ref|XP_009984341.1| (PREDICTED: retinal-specific ATP-binding cassette transporter-like, partial [Tauraco erythrolophus]) HSP 1 Score: 437.573 bits (1124), Expect = 5.462e-140 Identity = 255/682 (37.39%), Postives = 391/682 (57.33%), Query Frame = 0
Query: 46 GGWSLATSSPESAFLG--GTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFG---IGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQ-RWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKF-----VASSVAFLYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENP 706
G SLA + S FL T++N+ VW+NNKG HA+ S+LN +NA+LRA + + ++GIT NHP+ +T QL+ T++ D +A+ ++ A SF+P+S + YLI ER + K +Q V+GVSP YW + D+ + + + G+V+ IF +YTS N P ++ L+ Y A ++Y F+ PS + + C N+ G+ T IL++ + + VL + +P + LG GL+ LA N E++ + P W +G N++ +A++ V FF+ NL+++++L RW Q +P GEDEDVA ER+R+ NG D+L L +TK + R AVD + VGI+ GECFG LG+NGAGK+TTFK+LTG+ + T+G + L MGYCPQ +++D LLT RE L +Y ++RG+ + +++ + LGL G SGG KRK+ A+A +G P LIL+DEPT+GMD ++R +W +I + +GR+V++TSHSMEECE LCTRL IM G F+CLG+ Q+K KFG+G+ + L K K + F+ FP L ++H+N + + + SL+ I+ I+ N+ L IE+ +VS+T+LD+VFVNFA+++ EE P
Sbjct: 47 GPTSLAAAKEMSDFLKYMETEDNIKVWFNNKGWHAMVSFLNVANNAILRANLRTGQ-APEEYGITAVNHPLNLTKEQLSEVTVLTTSVDAVVAICVIFAMSFIPASFVLYLIQERVTKAKHLQFVSGVSPAIYWLTNFVWDI---VNYALSAGMVVVIFAGFNKKAYTSPTNLPVLIALLLLYGWAVIPMMYPASSFFSVPSTAYVALSCINLFVGINSSAITFILELFENNPFNKTLKNVL----IVLPHFCLGRGLIDLAMNQAVTEVY--ARFGEEHVSNPFQWDFVGKNLVAMAVQGVAFFMLNLLMQHRLFSTRWFV-QSAMSPI----IIGEDEDVAEERKRIMNGGNKTDILELQELTKIYA--GRHKPAVDRLCVGIRPGECFGLLGVNGAGKTTTFKMLTGDSDVTSGDAVVAGNSILTHISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIKRVAEWGIQKLGLPMYADHLAGTYSGGNKRKLSTAIALIGCPPLILLDEPTTGMDPQSRRLLWDSIVSVLRDGRAVVLTSHSMEECEALCTRLAIMVKGTFKCLGTIQQLKYKFGDGYIVTLKIKTPKSGLPPDPTPAEQFIRMNFPGSLQREKHYNMLQYQICSSSLAKIFRLIISNKENLHIEEYSVSQTTLDQVFVNFAKQQMEDEEIP 711
BLAST of abca2 partial vs. nr
Match: gi|196010107|ref|XP_002114918.1| (hypothetical protein TRIADDRAFT_10137 [Trichoplax adhaerens] >gi|190582301|gb|EDV22374.1| hypothetical protein TRIADDRAFT_10137, partial [Trichoplax adhaerens]) HSP 1 Score: 458.373 bits (1178), Expect = 6.309e-140 Identity = 239/714 (33.47%), Postives = 413/714 (57.84%), Query Frame = 0
Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSPESAFLGGTQENLVV------------WYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTA------GHYQLNPPGTL---MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVA-FLYARFPSILNLKRHHNTITFNV-QCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKK 699
PPR+V+ + + ++T++ + + +++ +F+ + +GG+S P S + ++ WYNNKG HA+P+YLNAM+NA+LR+ + D ++ ++GIT +NHP+ +T QL I ++ D+ IAV ++ A SF+P+S + +LI ER+ + K +Q V+GV PV YW D+ L +V I+ F ++TS NFP +L+L+F Y + ++Y +F+ PS + ++C NI G+ + T IL++ + ++ +FL P+Y +G G++ LA N + ++F + N +K P W ++G N+ +A+E V FF+ L++EY R+ QR P + +++ R+ ++ + +L L N+TK + +++++AVD + V I G+CFG LG+NGAGK+TTFK+LTG+++ T GH L+ ++ +GYCPQ +++ LLT RE L + ++RGI + KI + + LGL G SGG KRK+ A++ +G+P +I +DEPT+GMD +R +W I V +GRSV++TSHSMEECE LCTR+ IM +GKF+C+GS +K KFG G+ + + K + +A ++ F +++ ++RHHN + ++ + L+ ++ + + L I+D +VS+T+LDE+F+ FA+++
Sbjct: 915 PPRYVLYQQNYMINLTDK-NVSDYLMKVRNRFVLKIYGGFSFGEIDPNSPNIATPSSGSILLRRLSVRNVVRAWYNNKGYHAMPTYLNAMNNAILRSKLRPQDGDSRKYGITAYNHPMNLTRAQLVKEAIRRSYRDLLIAVSVIFALSFIPASFVLFLINERSSKAKHLQFVSGVHPVMYWLSNYAWDMVNYLFSMVCILIIFLAFNDKAFTSSENFPALLMLLFLYGWSIIPMMYPSSYVFSVPSTAYVALVCINIFIGINGTIATFILELFENDADLKTINNIIKQVFLIFPNYCMGRGIMDLAKNQLMADVFS--RFGENNFKNPFGWELVGRNLFAMAIEGVAFFILVLLMEY----RFFIKQRKLTPPNRFDEVEDEDVAEERRRVLSAEANDGILRLENLTKVYRTRRKKLIAVDRLCVSIPQGQCFGLLGINGAGKTTTFKMLTGDIDVTKGDAFVDGHSILSETDSVRQRIGYCPQFDAILDLLTGREHLMFFARLRGIPESEVAKIADWGIKKLGLIQYGDRLAGTYSGGNKRKLSTAISLVGNPPIIFLDEPTTGMDPKARRFLWDMINNIVRDGRSVVLTSHSMEECEALCTRIAIMVNGKFKCIGSIQHLKNKFGSGYTVQIRVKGSQANLEPLASYVSKTFSNVVLVERHHNQLQYHFPENIELAKLFDKLDNVREKLEIDDYSVSQTTLDEIFIGFAKQQ 1621 HSP 2 Score: 142.51 bits (358), Expect = 4.514e-31 Identity = 133/568 (23.42%), Postives = 260/568 (45.77%), Query Frame = 0
Query: 86 MHNAMLRATVESA-DMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLT-AFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILS---GMILLLTTI--ILDVLY--AIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYP-SNRYKPPLSWAVLGPNVL--ILALETVVFFLFNLVLE------YKLIQRWLRPQRTA---NPASTIG--ATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQ---------LNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIAL 621
+ +A+ RA +E+ ++ A G+ P L A+ I GI + +T ++ + + ++ ++ E+ R K+V + G+ +W I + L + ++L+ I +++ V+I +FF + +T++ C L + AN+ + G+I L+ IL +LY + + ++ L F L N+I V SN P++ + ++ ++T+++ + LE Y + +RW P +++ + T G T + L + G + + N+ K + + +AVD +++ + + +LG NGAGK+TT ILTG PT+G ++ +G CPQ N + LTV E L Y +++G+ + +N+ + D+GL ++ +LSGG KRK+ +AF+G K +++DEPT+G+D +R +W + + G+++++++H M+E + L R+ I++ GK +C GS +K K G G+++ L
Sbjct: 56 LQDAIERAIMENIINVSADAPGVYLQQFPYPCYIRDLFASAIG------GILPLFMTLSWIYTAAMIVKAVVHEKELRLKEVMKMMGLDNGVHWAAWFIQCFIIMLLTVFFLTLILRFGRIFMHSNP-----VIIFLFFMVFSLSTIMLCF--------LMSVFFTRANVAAACGGIIFFLSYFPSILVILYESVMTSGQKGIACLSSTTAFA-----------LGCNYIAQYEQQGVGIQWSNVRSSPVTEDTFSFSATCGMMIIDTIIYAILTWYLENVFPGQYGVPRRWYFPFQSSYWFSKPKTDGHIVTTRNHPPPLVEEEPTHLKLG--VSIQNLVKIYKTGNK--LAVDELNLNLYEDQITSFLGHNGAGKTTTMSILTGLFPPTSGTAHIYGKNITEDMDSIRESLGLCPQHNVLFENLTVEEHLWFYARLKGLSSAEVNDEVNRMIDDIGLRNKRHDLSSSLSGGMKRKLSVGIAFIGGSKTVILDEPTAGVDPYARRGIWDLVLK-YRKGKTILLSTHFMDEADLLGDRIAIISRGKLRCCGSSLFLKTKLGSGYYLTL 588 The following BLAST results are available for this feature:
BLAST of abca2 partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 11
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BLAST of abca2 partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of abca2 partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold927_size80360:5181..10540- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold927_size80360-snap-gene-0.20 ID=maker-scaffold927_size80360-snap-gene-0.20|Name=abca2 partial|organism=Tigriopus kingsejongensis|type=gene|length=5360bp|location=Sequence derived from alignment at scaffold927_size80360:5181..10540- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'abca2 partial' has the following synonyms
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