abca2 partial, maker-scaffold927_size80360-snap-gene-0.20 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000001122 (supercontig:LSalAtl2s:LSalAtl2s118:125434:135666:1 gene:EMLSAG00000001122 transcript:EMLSAT00000001122 description:"maker-LSalAtl2s118-snap-gene-1.28") HSP 1 Score: 257.299 bits (656), Expect = 3.051e-76 Identity = 195/723 (26.97%), Postives = 321/723 (44.40%), Query Frame = 0 Query: 4 PTTAIPPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSP----------------------------------------ESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESAD------MEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISD---LAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRW---LRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVA-FLYARFPSILNLKRHHNTITFNVQCRSLSV 664 P PP + S D+L ++ N + + +++ T +F +RFGG+ +P + A+ T + + VW+NNKG + SY+NA++N +LRAT+E +++S++GI NHP+ T+ Q + + V + +V +L S +P+S + + E + K + V GV TYW I D + L FI V I + S S ANF G L+ Y F + S +L N++ G+I LTT+++ + + VL +F+ P + L GL + I + ++ + + S W LG N L L E V+FF+ N+++E ++ + W + P DEDV E QRV + ++K + R ++ AVD +S G++ GECFG LG+NGAGK+TTFK+LTG++ PT+G +N +GYCPQE+++ LLT RE L++Y ++RG+ + KI+N + +L + IR G +SV++TSHSMEECE LC+RL IM +GKF+CLG+ +K +FG G+ + + S+ F+ FP + H+N +T+ + +++ + Sbjct: 9 PPNYYPPEVKLPSGDILQNL-NGRNISDYLIKTRFEFEGKRFGGFEFGILNPLAGRNFDQWADSFQKISKATNMNESRVDAFTSTFAKEALVDMAYSSSTFDYIRVWFNNKGWASSVSYMNAVNNMVLRATIEEKSERMHELVDSSKYGIAAINHPMNYTSDQFSNHQLNGIVEALLNSVNILLVLSILPASYVLNYVLENNLKIKHLHFVYGVKITTYWITGYIFDTIIFCINLVFITVALIAIDA---SSLISDANFYGFATLIILYSF-----------FFKKQSSALFALLNLNLMIGIIPFLTTLLVKY---VNEDEKLYYVLETLFMIFPQFCLIHGLFQMFIENIKSITYEDLGFTST--ASTFDWNYLGQNYLFLFFEAVIFFIANIMMEVRIFESWRLKILPDAFTKAQKETDDEVMDEDVYEEYQRVMNA-------YNELSKRYWR--QKNSAVDKLSFGVRRGECFGLLGINGAGKTTTFKMLTGDINPTSGDAFINGYSIFNEMGRCRQSLGYCPQEDALHPLLTGREHLELYSRLRGVNKKSEIKIVNYFLKELDV-----IRGG---------------------------------------------------QSVVLTSHSMEECEVLCSRLGIMVNGKFKCLGTAQHLKSRFGSGYSLTIRSGTTDGNLDSLKDFVLNAFPFSEIKEEHYNQLTYQIPLKTIKL 646
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000001342 (supercontig:LSalAtl2s:LSalAtl2s1226:24200:67450:1 gene:EMLSAG00000001342 transcript:EMLSAT00000001342 description:"snap_masked-LSalAtl2s1226-processed-gene-0.1") HSP 1 Score: 97.8265 bits (242), Expect = 2.277e-21 Identity = 65/250 (26.00%), Postives = 125/250 (50.00%), Query Frame = 0 Query: 377 EDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELE----------PTAGHYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVEN-GRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGE 615 ED+D + + + ++ L + K + + ++++++ I G +G LG +G GK+T + G + + G + PG +GY PQE ++ TVRE LK + ++ + ++ I+ + L + +++ G LSGG KR+V A A L DP+L ++DEPT G+D ++ +W + N +++++T+H +EE T + +M +GK SP ++ + +GE Sbjct: 10 EDDDSSFKNMENEPRI---VVALRDACKYYGKNAMENRVLNNLNLTITEGSIYGLLGASGCGKTTVLSCIVGRKKLNKGQVTVFGGSPGDKGIGIPGNRIGYMPQEIALYKEFTVRETLKYFGRLYEMETDQIDQRIDFILKFLQI-TRDRDMVGKLSGGQKRRVSFAAALLHDPELYILDEPTVGVDPRLRKSIWNHLTDLALNRKKTILITTHYIEEARQ-ATSIGLMRNGKLLAESSPEKLLQIYGE 254
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000000074 (supercontig:LSalAtl2s:LSalAtl2s100:66414:68636:-1 gene:EMLSAG00000000074 transcript:EMLSAT00000000074 description:"augustus_masked-LSalAtl2s100-processed-gene-0.5") HSP 1 Score: 95.9005 bits (237), Expect = 9.849e-21 Identity = 66/233 (28.33%), Postives = 125/233 (53.65%), Query Frame = 0 Query: 397 LWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQ----------LNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKS--VIDLGLDSQESIR-CGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWR---TIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKF 613 +W+ N K F + +++ + G +G LG +G GK+T +++TG + +G ++ L PG +GY PQ+ ++ LT+ E L Y ++ ++ + KI +++ +I++ L+ S R N+SGG +R++ AVA L +P+L+++DEPT G+D V ++++W TI R++I+T+H +EE + ++ GK +P ++ EKF Sbjct: 24 IWIRNAYKHFG-TKSNTSLFTGLNMSVPKGVIYGLLGPSGCGKTTLLRVITGREKLNSGEFKIFGEDPGTVGLEVPGRRIGYMPQDLALYMELTILETLFFYGRLNKMQ---TSKIRSRAETLIEI-LELPHSGRLVQNMSGGQRRRISLAVALLHEPELLVLDEPTVGVDPVLRQYIWDHLLTIVNNSSKKRTIIITTHYVEEARQ-AHIVGMLRYGKILDEDAPTKLLEKF 250
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000000736 (supercontig:LSalAtl2s:LSalAtl2s1118:20544:21383:1 gene:EMLSAG00000000736 transcript:EMLSAT00000000736 description:"augustus_masked-LSalAtl2s1118-processed-gene-0.6") HSP 1 Score: 82.4185 bits (202), Expect = 1.414e-17 Identity = 54/197 (27.41%), Postives = 103/197 (52.28%), Query Frame = 0 Query: 404 KEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHY----------QLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVEN---GRSVIMTSHSMEECEH 587 K F ++++ + ++S+ I G +G LG +G+GK+T + + G+ +G L PG +GY PQ+ ++ LT+ E L+ Y ++ + +K K +++L ++ I LSGG +R+ AVA L +P L+++DEPT G+D V +R++W + N ++++T+H ++E Sbjct: 34 KSFGWGKKKVNVLVNLSIRITKGHIYGLLGPSGSGKTTLLQCVIGKQSLDSGSILVFGEYPGTKDLGVPGKRVGYMPQDLAMYMELTIMETLEFYGRIFNMPKAKIKKRA-KFLVELLELPKKKILIQKLSGGHQRRASLAVALLHEPDLLILDEPTVGVDPVLRRNIWGHLVDICNNPIRKTTIVVTTHYVDEARQ 229
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000001147 (supercontig:LSalAtl2s:LSalAtl2s118:91392:124552:1 gene:EMLSAG00000001147 transcript:EMLSAT00000001147 description:"maker-LSalAtl2s118-snap-gene-1.27") HSP 1 Score: 65.4698 bits (158), Expect = 2.911e-11 Identity = 27/84 (32.14%), Postives = 55/84 (65.48%), Query Frame = 0 Query: 538 LGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIAL 621 +G ++I++DEPT+G+D ++R +W + R + GR++I+T+H M+E + L R+ I+++GK G ++ +FG G ++ + Sbjct: 507 VGGSRVIILDEPTAGVDPFSRRSIWDILIR-YKTGRTIILTTHFMDEADLLGDRIAIISEGKLITCGXSLFLRNRFGNGXYLTI 589
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000003104 (supercontig:LSalAtl2s:LSalAtl2s174:364234:370462:-1 gene:EMLSAG00000003104 transcript:EMLSAT00000003104 description:"maker-LSalAtl2s174-augustus-gene-3.18") HSP 1 Score: 61.6178 bits (148), Expect = 5.195e-10 Identity = 67/289 (23.18%), Postives = 126/289 (43.60%), Query Frame = 0 Query: 333 NVLILALETVVFFLFNLVLEYK--LIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQV------RGIRW-------RDSEKIINKSVIDLGLDS-------QESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGK 599 N L+ L + FL ++ E + LI + Q A P+ + G E + T D+ + N+ K + +S +++G+ +G +G+GKST ++L EP G ++ Y E ++D+L ++ C + I++ D K+ + ID + S Q R LSGG K++V A A L D +I+ DE TS +D++T+ + + ++R V +G++ I+ +H + H + ++++GK Sbjct: 304 NGLLFQLSLPLNFLGSVYREIRQSLIDMQVMFQLMATPSKITSSKGATEINFINNMEDASITFDDVKFGYNIDKNI---------ANGLSFSVESGKTIAIVGESGSGKSTLVRLLYRFYEPQLGSIKIG------NYNINEVTLDSLRRQISIVPQDCVLFNDTIFHNIKYGNLNCSDEDVYKVAKLAEIDNAIRSWPQGYLTQVGERGLKLSGGEKQRVAIARAALKDSPIIIFDEATSSLDSITETMIMKALKR-VTSGKTAIIIAHRLSTVVH-ADEIFVLSNGK 575
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000000940 (supercontig:LSalAtl2s:LSalAtl2s1166:1016:21423:-1 gene:EMLSAG00000000940 transcript:EMLSAT00000000940 description:"maker-LSalAtl2s1166-snap-gene-0.62") HSP 1 Score: 56.225 bits (134), Expect = 2.275e-8 Identity = 44/140 (31.43%), Postives = 62/140 (44.29%), Query Frame = 0 Query: 419 VSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPP---GTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQ-ESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMD 554 V GI +G NG GKST K+L G+LEPT G + N G + + + D T M V R K + GL S +I+ +LSGG K +V A L P ++++DEPT+ +D Sbjct: 529 VDFGIDMESRIAIVGPNGVGKSTFLKLLMGDLEPTKGEMRKNARLKIGRFDQHSGEHLTADEXPTEYIMRLFNLPVEKAR---------KQLGSFGLQSHAHTIKMKDLSGGQKSRVALAELTLSAPDVVILDEPTNNLD 659
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000000133 (supercontig:LSalAtl2s:LSalAtl2s1021:132111:135265:-1 gene:EMLSAG00000000133 transcript:EMLSAT00000000133 description:"maker-LSalAtl2s1021-augustus-gene-0.34") HSP 1 Score: 54.299 bits (129), Expect = 9.073e-8 Identity = 49/182 (26.92%), Postives = 86/182 (47.25%), Query Frame = 0 Query: 420 SVGIQAG-----ECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDP-KLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSV-IMTSHSMEECEHLCTRLVI 594 + +QAG E LG NG GK+T +++ G+LEP G ++ P + Y PQ+ S + TVR +L + I + ++ ID +D + NLSGG ++V A LG P + L+DEP++ +D+ + + I+R + + + + H +L R ++ Sbjct: 376 KLSVQAGNFSDSEILVMLGENGTGKTTFIRMMAGKLEPDTGSGEI--PQLNISYKPQKISPKSQGTVRTLLHEKIRDAYIHPQFVADVMRPMKIDDIIDQE----VQNLSGGELQRV-ALTLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKKTGFVVEHDFIMATYLADRXIV 550
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000002221 (supercontig:LSalAtl2s:LSalAtl2s1420:21426:31801:1 gene:EMLSAG00000002221 transcript:EMLSAT00000002221 description:"maker-LSalAtl2s1420-augustus-gene-0.12") HSP 1 Score: 53.5286 bits (127), Expect = 1.820e-7 Identity = 47/203 (23.15%), Postives = 96/203 (47.29%), Query Frame = 0 Query: 419 VSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRW-RDSEKIINKSVIDL--GLDSQESIRCG-NLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTI---QRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFG 614 VS+ I+ G +G G+GKS+ + GE++ +G + G++ Q ++T +++ + G ++ R E KS +D+ G D E G NLSGG K++V A A + L+D+P S +D+ +H++ + + ++ +M +H + ++++M DG+ +G+ ++ + G Sbjct: 657 VSLDIEVGSLVAVVGTVGSGKSSLLSAILGEMDKVSGLITVR--GSIAYGAQQAWVLNT--SLKNNILFNKSYDGDKYTRIVEACALKSDLDMLPGGDETEIGEKGINLSGGQKQRVSLARAVYSGSDIYLLDDPLSAVDSHVGKHIYDNVISSSSGILKDKTRVMVTHGVTYLP-FTDKIIVMKDGRVSEIGTYKELLRQKG 854
BLAST of abca2 partial vs. L. salmonis genes
Match: EMLSAG00000000752 (supercontig:LSalAtl2s:LSalAtl2s111:55855:93761:1 gene:EMLSAG00000000752 transcript:EMLSAT00000000752 description:"maker-LSalAtl2s111-augustus-gene-1.10") HSP 1 Score: 53.1434 bits (126), Expect = 2.398e-7 Identity = 67/325 (20.62%), Postives = 145/325 (44.62%), Query Frame = 0 Query: 305 FITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTLMGYCPQE-----NSVDTLLTV---------REMLKVYCQVRGIR-WRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFG 614 F+ LFD+++ P + P A+ + +++++ + FL L+ E + +Q + + + G E + +E +++G+ WL + + EFT + ++S ++ GE +G G GKST + L GE + G ++N G + Y QE SV + + RE+++V +R W D D ++ I +LSGG K ++ A + ++D+P S +D + ++ T ++ + ++VI+ +H ++ ++ +++ +DG+ + G+ ++ + G Sbjct: 652 FLIFGLFDAIKLPLTHFFPS---AISASSEALVSMKRIEEFL--LLNELRDVQ---------SKINHVILPGRYEPLTVEVTKISGK------WLDS-SNEFT--------LKNISFSVEIGELCAIIGPVGCGKSTIIQSLLGEFPVSYG--EINIKGRI-SYASQEAWIFSGSVRQNILMGKPLIDKRYREVIRVCALEHDVREWPDG---------DYTFVGEKGI---SLSGGQKSRINLARCVYASADIYILDDPLSAVDPHVGQQLFDTCIQKFLSDKTVILVTHQLQFLKNANNIILLNSDGEIEASGTYEKLMSQSG 932
BLAST of abca2 partial vs. SwissProt
Match: gi|327478592|sp|Q86UQ4.3|ABCAD_HUMAN (RecName: Full=ATP-binding cassette sub-family A member 13) HSP 1 Score: 378.637 bits (971), Expect = 1.171e-112 Identity = 230/685 (33.58%), Postives = 379/685 (55.33%), Query Frame = 0 Query: 44 RFGGWSLATSSPESAFLGGTQENLV-------VWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAR---EVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPP-------------GTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVA-FLYARFPSILNLKRHHNTITFNVQCR--SLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSH 701 R GGWS P A GG N+ VWYN KG H+LPSYLN ++N +L + ++ Q+GIT ++HP L I++++ G+A+ ++ FS + +S+ + ++ +R K++Q ++G+ YW + D+ L + + V+ F + ++T + N +L+ + A+ +Y + ++F+ + + + N + G+ +L TI+ +L I A+ + +VL W+F P + LG+GL+ L N I +L + + + Y P LG + LA + V L ++L + L+ RW R T T+ ++ +D DV E +RV G+T GD+L L N++K + R + I+AV +S+GI GECFG LG+NGAGKSTTFK+L GE+ T+GH + P G L+GYCPQ++++D LLT E L YC +RGI + ++ + L L++ SGGTKRK+ A+A +G P ++L+DEP+SGMD +KR++W+TI ++V G + ++TSHSMEECE LCTRL IM +G F+CLGSP IK +FG+G+ + + +V+ L FP I +H N + ++V R L+ ++ I N+ L I+ ++++T+L++VF+NFA ++ Sbjct: 4365 RLGGWSFGLKIPSEA--GGANGNISKPPTLAKVWYNQKGFHSLPSYLNHLNNLILWQHLPPT-VDWRQYGITLYSHPY--GGALLNKDKILESIRQCGVALCIVLGFSILSASIGSSVVRDRVIGAKRLQHISGLGYRMYWFTNFLYDMLFYLVSVCLCVAVIVAFQLTAFTFRKNLAATALLLSLFGYATLPWMYLMSRIFSSSDVAFISYVSLNFIFGLCTMLITIMPRLLAIISKAKNLQNIYDVLKWVFTIFPQFCLGQGLVELCYNQIKYDL--THNFGIDSYVSPFEMNFLGWIFVQLASQGTVLLLLRVLLHWDLL-RWPRGHSTLQ--GTVKSS-KDTDVEKEEKRVFEGRTNGDILVLYNLSKHYRRFFQNIIAVQDISLGIPKGECFGLLGVNGAGKSTTFKMLNGEVSLTSGHAIIRTPMGDAVDLSSAGTAGVLIGYCPQQDALDELLTGWEHLYYYCSLRGIPRQCIPEVAGDLIRRLHLEAHADKPVATYSGGTKRKLSTALALVGKPDILLLDEPSSGMDPCSKRYLWQTIMKEVREGCAAVLTSHSMEECEALCTRLAIMVNGSFKCLGSPQHIKNRFGDGYTVKVWLCKEANQHCTVSDHLKLYFPGIQFKGQHLNLLEYHVPKRWGCLADLFKVIENNKTFLNIKHYSINQTTLEQVFINFASEQQQ 5038 HSP 2 Score: 148.673 bits (374), Expect = 2.054e-35 Identity = 154/625 (24.64%), Postives = 281/625 (44.96%), Query Frame = 0 Query: 127 IQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLA------TNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVL-EYKLIQRWLRPQRTANPASTIGATGEDEDVALER----------------QRVNGQTTGDL--LWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSE--KIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKAR-------KFVASSVAFLYARFPSILNLKRHHNTITFNVQCRS----LSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNF---AEKKSH 701 + NV +M+LT V +S++ L+ E+ + ++ + GV PV ++ + ++AV IVL+ GI ++++ F L L+ F S L Y L F++ + LC +++ MI L I+L VL+ Q V + + + G+G+ + T N ++ ++E + + W +L + L ++L NL+ + L + W P TA+ ++G E L Q G+ G + L +VTKE+ + V +S+ + LG NGAGK+T +LTG PT+G +N +G CPQ++ + LTVRE L ++ ++ +W E + +N+++ D+ L + + LSGG KRK+ +AF+G + +++DEPTSG+D ++ +W + + E GR++I T+H ++E E L R+ ++ G+ +C G P +KE +G+G + LT + K +A + + P + +T+ + + L ++ + N L + +S T+L+EVF+ + KKSH Sbjct: 3565 LNNVGFFFPLIMMLTWMVSV-ASMVRKLVYEQEIQIEEYMRMMGVHPVIHFLAWFLENMAVLTISSATLAIVLKTSGIFAHSN--TFIVFLFLLDFGMSV-VMLSYLLSAFFSQANTA---ALCTSLVY-MISFLPYIVLLVLH-----NQLSFVNQTFLCLLSTTAFGQGVFFITFLEGQETGIQWNNMYQALEQGGMTFGW-VCWMILFDSSLYFL---CGWYLSNLIPGTFGLRKPWYFP-FTASYWKSVGFLVEKRQYFLSSSLFFFNENFDNKGSSLQNREGELEGSAPGVTLVSVTKEY---EGHKAVVQDLSLTFYRDQITALLGTNGAGKTTIISMLTGLHPPTSGTIIINGKNLQTDLSRVRMELGVCPQQDILLDNLTVREHLLLFASIKAPQWTKKELHQQVNQTLQDVDLTQHQHKQTRALSGGLKRKLSLGIAFMGMSRTVVLDEPTSGVDPCSRHSLWDILLKYRE-GRTIIFTTHHLDEAEALSDRVAVLQHGRLRCCGPPFCLKEAYGQGLRLTLTRQPSVLEAHDLKDMACVTSLIKIYIPQAFLKDSSGSELTYTIPKDTDKACLKGLFQALDENLHQLHLTGYGISDTTLEEVFLMLLQDSNKKSH 4167
BLAST of abca2 partial vs. SwissProt
Match: gi|161784300|sp|Q8IZY2.3|ABCA7_HUMAN (RecName: Full=ATP-binding cassette sub-family A member 7; AltName: Full=ABCA-SSN; AltName: Full=Autoantigen SS-N; AltName: Full=Macrophage ABC transporter) HSP 1 Score: 378.252 bits (970), Expect = 1.500e-112 Identity = 229/657 (34.86%), Postives = 373/657 (56.77%), Query Frame = 0 Query: 63 TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPT------AGHYQLNPPGTL---MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNV----QCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705 Q++L +W+NNKG H++ +++N NA+LRA + + ITT NHP+ +T QL+ ++ + D+ +++ ++ A SFVP+S LI ER R K +QL+ G+SP YW + D+ L + ++ F +Y + AN P +L+L+ Y + T L+Y F+ PS +++ C N+ G+ + T +L+ L++ + ++ +L +FL P + LG GL+ + N + F+ + +++ PL W V+G N+L + ++ +F LF L+L+++ L PQ +G EDEDVA ER+RV G T GD+L L N+TK + +R+ AVD + +GI GECFG LG+NGAGK++TF+++TG+ + AGH P MGYCPQ +++ LLT RE L++ ++RG+ + + LGL G SGG KRK+ A+A +GDP ++ +DEPT+GMD +R +W ++ V GRSV++TSHSMEECE LC+RL IM +G+F+CLGSP +K +F G + L A + + AF+ A FP + H + F + +C +L+ ++G + + A G+ED +VS+T L+EVF+ F++ + E+ Sbjct: 1467 AQDSLKIWFNNKGWHSMVAFVNRASNAILRAHLPPGPARHAH-SITTLNHPLNLTKEQLSEGALMASSVDVLVSICVVFAMSFVPASFTLVLIEERVTRAKHLQLMGGLSPTLYWLGNFLWDMCNYLVPACIVVLIFLAFQQRAYVAPANLPALLLLLLLYGWSITPLMYPASFFFSVPSTAYVVLTCINLFIGINGSMATFVLE-LFSDQKLQEVSRILKQVFLIFPHFCLGRGLIDMVRNQAMADAFERLG--DRQFQSPLRWEVVGKNLLAMVIQGPLFLLFTLLLQHR---SQLLPQPRVRSLPLLGE--EDEDVARERERVVQGATQGDVLVLRNLTKVYR--GQRMPAVDRLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLASRGEAVLAGHSVAREPSAAHLSMGYCPQSDAIFELLTGREHLELLARLRGVPEAQVAQTAGSGLARLGLSWYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNSLLAVVREGRSVMLTSHSMEECEALCSRLAIMVNGRFRCLGSPQHLKGRFAAGHTLTLRVPAAR-SQPAAAFVAAEFPGAELREAHGGRLRFQLPPGGRC-ALARVFGELAVHGAEHGVEDFSVSQTMLEEVFLYFSKDQGKDEDT 2110 HSP 2 Score: 132.109 bits (331), Expect = 3.032e-30 Identity = 72/221 (32.58%), Postives = 129/221 (58.37%), Query Frame = 0 Query: 415 AVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKAR 626 A+ +S+ G +LG NGAGK+TT IL+G P+ G + +G CPQ N + +LTV E + Y +++G+ ++ + D+GL S++S++ +LSGG +RK+ A+AF+G +++++DEPT+G+D ++R +W + + E GR++I+++H ++E E L R+ ++A G+ C GSP ++ G G+++ L KAR Sbjct: 823 ALRGLSLDFYQGHITAFLGHNGAGKTTTLSILSGLFPPSGGSAFILGHDVRSSMAAIRPHLGVCPQYNVLFDMLTVDEHVWFYGRLKGLSAAVVGPEQDRLLQDVGLVSKQSVQTRHLSGGMQRKLSVAIAFVGGSQVVILDEPTAGVDPASRRGIWELLLKYRE-GRTLILSTHHLDEAELLGDRVAVVAGGRLCCCGSPLFLRRHLGSGYYLTLV-KAR 1041
BLAST of abca2 partial vs. SwissProt
Match: gi|81910100|sp|Q5SSE9.1|ABCAD_MOUSE (RecName: Full=ATP-binding cassette sub-family A member 13) HSP 1 Score: 371.318 bits (952), Expect = 3.997e-110 Identity = 227/682 (33.28%), Postives = 373/682 (54.69%), Query Frame = 0 Query: 44 RFGGWSLATSSPESAFLGGTQEN-----LVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQARE---VLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRV-QRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPP-------------GTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVA-FLYARFPSILNLKRHHNTITFNVQ--CRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKK 699 R GGWS P A T + VWYN KG H+LPSYLN ++N +L + + ++ Q+GIT ++HP L I++++ G+A+ ++ FS + +S+ + ++ +R K++Q ++G+ TYW + + D+ L + + V+ F + ++T + N +L+ + A +Y + ++F+ + + + N + G+ +L T + +L I A+ ++ VL W F P + LG+GL+ L N I +L + + + Y P LG + L L+ F L ++ + + RW R I +D DV E+ RV G+T GD++ L N++K + V + AV +S+GI GECFG LG+NGAGKSTTFKIL GE P++G+ + P G L+GYCPQ++++D LLT E L+ YC++RGI + ++ V L L+S SGGT+RK+ A+A +G P ++L+DEP+SGMD +KR++W+TI ++V +G + ++TSHSMEECE LCTRL IM DG F+CLG P IK +FG+G+ + + S+V+ L FP I + N + ++VQ L+ ++ + N++LL IE ++S+T+L++VFVNFA ++ Sbjct: 4338 RLGGWSFGGQIPNDAEDVKTNTSKPRTLAKVWYNQKGFHSLPSYLNHLNNLILWHHLPANAVDWRQYGITLYSHPY--GGALLNEDRILESIRQCGVALCIVLGFSILSASIGSSVVRDRVTGAKRLQHISGLGHRTYWLINFLYDMLFYLVSVCLCVAVIGAFQLTAFTFRENLAATALLLALFGYAMIPWMYLMSRIFSSSDVAFISYISLNFIFGLCTMLMTTMPRLLAIISKAQNLQKIYNVLKWAFTIFPQFCLGQGLIELCYNQIKYDL--THNFGIDSYVSPFEMNFLGWIFVELTLQGT-FLLLLRLMLHGDLLRWPRDHSVLQ---DIVKPAKDIDVETEQMRVLEGRTGGDMMVLCNLSKSYRSVFGGKTTAVHGISLGIPRGECFGLLGVNGAGKSTTFKILNGETPPSSGYTVIRTPQGDMVDLASAGKAGILIGYCPQQDALDELLTGWEHLQYYCRLRGIPKQYIPEVAADLVRRLHLESHVDKPVATYSGGTRRKLSTALALVGKPDILLLDEPSSGMDPCSKRYLWQTITQEVRDGCAAVLTSHSMEECEALCTRLAIMVDGSFRCLGPPQHIKNRFGDGYTVKVWLHKEGSQPSAVSDCLKLHFPGIQFKGQRLNLLEYHVQKSWECLADLFKVLENNKSLLNIEHYSISQTTLEQVFVNFATEQ 5011 HSP 2 Score: 145.206 bits (365), Expect = 2.713e-34 Identity = 129/531 (24.29%), Postives = 247/531 (46.52%), Query Frame = 0 Query: 126 IIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFL-----FNLVL-EYKLIQRWLRP--------------QRTANPASTIGATGED-EDVALERQRVNGQTTGDL--LWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPG---------TLMGYCPQENSVDTLLTVREMLKVYCQVRGIRW--RDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALT 622 + NV +M+LT V +S++ L+ ER + ++ + G+ P ++ + ++A ++L++ GI + F L L+ F SA + Y L F + + LC + L MI L ++L VL+ Q + + + + + G+G+ + F+ + + +++ + P G ++ + +++FL NLV + L + W P +R + +S + ED + L +Q G+ G + L +VTKE+ + VAV +++ + LG NGAGK+T +L G PT+G +N +G CPQ++ + LTVRE L ++ ++ W ++ ++ +NK++ ++ L + G LSGG KRK+ +AF+G K +++DEP+SG+D ++R +W + + E GR++I T+H ++E E L + ++ G+ +C P +KE +G+G + L+ Sbjct: 3532 FLNNVGFFFPLIMMLTWMVAV-ASMVRKLVYEREIQIEEYMRMMGLHPTIHFLSWFLENMATLALSSAALAVILKMSGI--FMHSDAFIIFLYLLDFGVSA-VMMSYFLSVFFNQANTA---ALCTS-LGYMISFLPYVVLLVLH-----NQLSFAIQTLLCLLSTTAFGQGVFFIT--FLEGQE-EGIQWGNMYRAPEPGGMTFGWVCWMILFDAILYFLGGWYFSNLVPGTFGLGKPWYFPFTASYWKSICGLMERRRCSLSSGLFFFNEDFGNKGLSQQNGPGEMEGGNPGVALISVTKEY---EDHKVAVQELTLTFHRDQITALLGTNGAGKTTIISMLMGLFPPTSGTITINGKNLQTDLSKVREELGVCPQQDVLLDNLTVREHLMLFASIKAPWWTTKELQQQVNKTLDEVELTQHQHKPAGVLSGGMKRKLSIGIAFMGMSKTVVLDEPSSGVDPCSRRSLWDILLKYRE-GRTIIFTTHHLDEAEMLSDHVAVLQQGRLRCYAPPADLKETYGQGLTLTLS 4042
BLAST of abca2 partial vs. SwissProt
Match: gi|85700402|sp|Q99758.2|ABCA3_HUMAN (RecName: Full=ATP-binding cassette sub-family A member 3; AltName: Full=ABC-C transporter; AltName: Full=ATP-binding cassette transporter 3; Short=ATP-binding cassette 3) HSP 1 Score: 302.753 bits (774), Expect = 8.231e-87 Identity = 207/675 (30.67%), Postives = 342/675 (50.67%), Query Frame = 0 Query: 71 YNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDS------------VEYPSNRYKPPLSWAV--LGPNVLILALETVVFFLFNLVLEYKLIQRW------LRPQRTANPAST-IGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRR---IVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG------HYQLNPPGTL---MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKA---RKFVASSVAFLYARFPSILNLKRHHNTITFNVQCRSLS--VIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENPR 707 +NN+ H+ + L + N + + I N P + Q A + IA+ LL A +F+ S+ ++ER + K VQ V+GV ++W AL+ DL L ++ +V + F + ++T + L+L+ Y A L+Y + F + + NILSG+ L I+ + A+K ++ + H +FL +P++ LG + N+ T S ++Y N Y +W+ +G V +A + + ++E L+QR LR +RT T + ED+DVA ER R+ + LL + KE ++V + ++AVD +S+ +Q GECFG LG NGAGK+TTFK+LTGE T+G H + G + +GYCPQ +++ +T REML +Y ++RGI R + ++ L L+ + SGG KRK+ +A +G+P +I +DEP++GMD V +R +W T+ R E+G+++I+TSHSMEECE LCTRL IM G+F+CLGSP +K KFG G+ + ++ ++ + AF+ FP + H + +++ R LS ++G + + G++D +VS+ SL++VF++FA + E R Sbjct: 1042 FNNQAYHSPATALAVVDNLLFKLLC------GPHASIVVSNFPQPRSALQAAKDQFNEGRKGFDIALNLLFAMAFLASTFSILAVSERAVQAKHVQFVSGVHVASFWLSALLWDLISFLIPSLLLLVVFKAFDVRAFTRDGHMADTLLLLLLYGWAIIPLMYLMNFFFLGAATAYTRLTIFNILSGIATFLMVTIMRIP-AVKLEELSKTLDH-VFLVLPNHCLGMAVSSFYENYETRRYCTSSEVAAHYCKKYNIQYQENFY----AWSAPGVGRFVASMAASGCAYLILLFLIETNLLQRLRGILCALRRRRTLTELYTRMPVLPEDQDVADERTRILAPSPDSLLHTPLIIKELSKVYEQRVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLRAKVQSEGQQEALEEFKAFVDLTFPGSVLEDEHQGMVHYHLPGRDLSWAKVFGILEKAKEKYGVDDYSVSQISLEQVFLSFAHLQPPTAEEGR 1704 HSP 2 Score: 154.836 bits (390), Expect = 1.325e-37 Identity = 100/346 (28.90%), Postives = 178/346 (51.45%), Query Frame = 0 Query: 366 ANPASTIGATGEDED--VALERQRVNGQTTGDL---LWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGH-----YQLNPP----GTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCRS---LSVIYGHILPNQALLGIEDVNVSKTSLDEVFVN 694 P + G ED D AL + + DL + + +++K F + AV +++ + G+ LG NGAGK+TT +LTG PT+G Y+++ +G CPQ + + LTV E L Y Q++G+ + + + + + +GL+ + + R LSGG +RK+ +A + K++++DEPTSGMDA+++R +W +QRQ ++ R++++T+H M+E + L R+ IMA G+ QC GS +K+K+G G+H+ L + ++ P+ ++F + S ++ + Q LGI S T+++EVF+ Sbjct: 495 GKPRAVAGKEEEDSDPEKALRNEYFEAEPE-DLVAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQ-KSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYGAGYHMTLVKEPHCNPEDISQLVHHHVPNATLESSAGAELSFILPRESTHRFEGLFAKLEKKQKELGIASFGASITTMEEVFLR 838
BLAST of abca2 partial vs. SwissProt
Match: gi|338817896|sp|Q8R420.3|ABCA3_MOUSE (RecName: Full=ATP-binding cassette sub-family A member 3) HSP 1 Score: 296.204 bits (757), Expect = 1.483e-84 Identity = 206/671 (30.70%), Postives = 345/671 (51.42%), Query Frame = 0 Query: 71 YNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSN-------RYKPPL-SWAV--LGPNVLILALETVVFFLFNLVLEYKLIQR-------WLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRV--QRR-IVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGH-----YQLNPP-GTL---MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKA---RKFVASSVAFLYARFPSILNLKRHHNTITFNVQCRSLS--VIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENPR 707 +NN+ H+ + L + N + + Q I N+P T Q+A + IA+ LL A +F+ S+ ++ER + K VQ V+GV T+W AL+ DL L ++ +V Q F + ++T + +L+L+ Y A L+Y + F+ S + NILSG+ + I+ + A+K +R + H +FL +P++ LG + N+ T S E ++ +Y+ +W+ +G V +A ++ ++E L+ R + R A + ED+DVA ER R+ + +L + E ++V QR ++AVD +S+ +Q GECFG LG NGAGK+TTFK+LTGE T+G Y ++ G + MGYCPQ +++ +T REML +Y ++RGI R + ++ L L+ + SGG KRK+ +A +G+P +I +DEP++GMD V +R +W T+ R E+G+++++TSHSMEECE LCTRL IM G+F+CLGSP +K KFG G+ + ++ + + AF+ FP + H + + +++ LS ++G + + G++D +VS+ SL++VF++FA + E+ R Sbjct: 1042 FNNQAYHSPATALAIVDNLLFKLLC------GPQASIEISNYPQPRNTLQVAKDHFNEGRKGFDIALNLLIAMAFLASTFSILAVSERAVQAKHVQFVSGVHVATFWFSALLWDLISFLVPSLLLLVVFQAFNVHAFTRDGHMADLLLLLMLYGWAIIPLMYLMSFFFSAASTAYTRLTIFNILSGIATFIMVTIMRIP-AVKLEELSRTLDH-VFLVLPNHCLGMAVSNFYENYETRRYCTSSELAAHYCKKYNIQYQESFYAWSTPGVGKFVTSMAASGGIYLTLLFLIETNLLWRLRTFICAFRRRWTLAELQNRTSVLPEDQDVAEERSRILVPSLDSMLDTPLIINELSKVYDQRAPLLAVDRISLAVQKGECFGLLGFNGAGKTTTFKMLTGEETITSGDAFVGGYSISSDIGKVRQRMGYCPQFDALLDHMTGREMLVMYARLRGIPERLINACVENTLRGLLLEPHANKLVKTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLQAKVRSEGKQDALEEFKAFVDLTFPGSILEDEHQDMVHYHLPGCDLSWAKVFGILEKAKEKYGVDDYSVSQISLEQVFLSFAHLQPPTTEDGR 1704 HSP 2 Score: 162.925 bits (411), Expect = 3.364e-40 Identity = 100/346 (28.90%), Postives = 181/346 (52.31%), Query Frame = 0 Query: 366 ANPASTIGAT--GEDEDVALERQRVNGQTTGDL---LWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGH-----YQLNPPGTL----MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCRS---LSVIYGHILPNQALLGIEDVNVSKTSLDEVFVN 694 NP + +G G D + AL + + DL + + +++K F + + + +++ + G+ LG NGAGK+TT +LTG PT+GH Y+++ +G CPQ + + LTV E L Y Q++G+ + + + + + L L+ + +R LSGG KRK+ +A + K++++DEPTSGMDAV++R +W +Q+Q ++ R+V++T+H M+E + L R+ I+A G+ QC GS +K+K+G G+H+ L + ++ P+ + ++F + S ++ + Q LGI S T+++EVF+ Sbjct: 495 GNPRTVVGKEEEGSDPEKALRNEYFEAEPE-DLVAGIKIKHLSKVFQVGNKDKMGIRDLTLNLYEGQITVLLGHNGAGKTTTMSLLTGLFPPTSGHAYIHGYEISQDMAQIRKSLGLCPQHDVLFDNLTVAEHLYFYAQLKGLSLQKCPEEVKQMLHILSLEDKRDLRSKFLSGGMKRKLSIGIALIAGSKVLMLDEPTSGMDAVSRRAIWDLLQQQ-KSDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGSSLFLKQKYGAGYHMTLVKEPHCNPEGISQLVHHHVPNAMLESHAGAELSFILPKESTHRFESLFAKLEKKQKELGIASFGASVTTMEEVFLR 838
BLAST of abca2 partial vs. SwissProt
Match: gi|75327922|sp|Q84M24.2|AB1A_ARATH (RecName: Full=ABC transporter A family member 1; Short=ABC transporter ABCA.1; Short=AtABCA1; AltName: Full=ABC one homolog protein 1; Short=AtAOH1) HSP 1 Score: 286.574 bits (732), Expect = 3.041e-81 Identity = 192/633 (30.33%), Postives = 318/633 (50.24%), Query Frame = 0 Query: 32 WILNTHKQFLDQRFGGWSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQR--------WLRP----QRTANPAST----------IGATGEDE-DVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRR--IVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQL------NPPGTL---MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQR-QVENGR-SVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARK 627 +++++ Q R+G + P+ + LG T V +N HA P Y+N MH A+LR + +M I T NHP+ T Q ++ A+++ AFSF+P+S ++ ER + K QL++GVS ++YW + D L I+ FG+ + F ++++ Y A + YCL F E S+ Q ++L + SG+IL++ + ++ + I A A L F P + +GL LA + + D + W V G ++ L LE++ +FL L LE +Q+ W + ++ A +ST I ED+ DV ER RV +G + +L+L N+ K + + VAV ++ +QAGECFG+LG NGAGK+TT +L+GE PT+G + P + +GYCPQ +++ LTV+E L++Y +++G+ + ++ + +++ L LSGG KRK+ A+A +GDP ++++DEP++GMD V KR +W I R +G+ +VI+T+HSM E + LCTR+ IM G+ +C+GSP +K ++G H+ L K + Sbjct: 1089 FLMSSFDQSYQSRYGSILMDGQHPDGS-LGYT-----VLHNGTCQHAGPIYINVMHAAILRLATGNKNMT-----IQTRNHPLPPTKTQRIQR---HDLDAFSAAIIVNIAFSFIPASFAVPIVKEREVKAKHQQLISGVSVLSYWLSTYVWDFISFLFPSTFAIILFYAFGLEQFIGIGRFLPTVLMLLEYGLAIASSTYCLTFFFTEHSMAQNVILMVHFFSGLILMVISFVMGL---IPATASANSYLKNFFRLSPGFCFSDGLASLA--LLRQGMKDKSSHGV------FEWNVTGASICYLGLESIFYFLVTLGLELMPVQKVMSFSIGEWWQNLKAFKQGAGSSSTEPLLKDSTGAISTDMEDDIDVQEERDRVISGLSDNTMLYLQNLRKVYPGDKHHGPKVAVQSLTFSVQAGECFGFLGTNGAGKTTTLSMLSGEETPTSGTAFIFGKDIVASPKAIRQHIGYCPQFDALFEYLTVKEHLELYARIKGVVDHRIDNVVTEKLVEFDLLKHSHKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRYGN--HLELEVKPNE 1694 HSP 2 Score: 140.198 bits (352), Expect = 8.515e-33 Identity = 104/350 (29.71%), Postives = 177/350 (50.57%), Query Frame = 0 Query: 379 EDVALE-RQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHY---------QLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDL----GLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNV----------------QCRSLSVIYGHI--LPNQALLGIEDVNVSKTSLDEVFVNFA 696 E ++LE RQ+ + G + + N+ K + + AV+ + + + + LG NGAGKSTT +L G L PT+G ++ +G CPQ + + LTVRE L+++ ++G+ E + +V+D+ GL + + LSGG KRK+ +A +G+ K+I++DEPTSGMD + R W+ + ++++ GR +++T+HSM+E E L R+ IMA+G +C GS +K +G G+ + L K V+ + ++ PS + N I+F + C SV I + + GI+ +S T+L+EVF+ A Sbjct: 533 ESISLEMRQQ---ELDGRCIQVRNLHKVYASRRGNCCAVNSLQLTLYENQILSLLGHNGAGKSTTISMLVGLLPPTSGDALILGNSIITNMDEIRKELGVCPQHDILFPELTVREHLEMFAVLKGVE----EGSLKSTVVDMAEEVGLSDKINTLVRALSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQ-LIKKIKKGRIILLTTHSMDEAEELGDRIGIMANGSLKCCGSSIFLKHHYGVGYTLTLV-KTSPTVSVAAHIVHRHIPSATCVSEVGNEISFKLPLASLPCFENMFREIESCMKNSVDRSKISEIEDSDYPGIQSYGISVTTLEEVFLRVA 873
BLAST of abca2 partial vs. SwissProt
Match: gi|1035995922|sp|E9PX95.1|ABCAH_MOUSE (RecName: Full=ATP-binding cassette sub-family A member 17) HSP 1 Score: 244.973 bits (624), Expect = 3.198e-67 Identity = 195/684 (28.51%), Postives = 326/684 (47.66%), Query Frame = 0 Query: 71 YNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLG--QLMVLCANI-LSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNF--------------ITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETV------VFFLFNLVLEYKLIQRW--LRPQRTANPASTIG--ATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRR---IVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGN-----LSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKAR---KFVASSVAFLYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQALLG--IEDVNVSKTSLDEVFVNFAEKKSHGEEN 705 +NN+ H+ L + N + + + + ITT N+P T +++ + + Q + V L +F+ SS + E++ + K +Q V+GVS +W AL+ DL L ++ +V + ++ + P V+++M Y A LVY + F P +L+V+ + +S ++L+ T D+ Y + + L IFL +P + LG L L NF N++ + N Y +W LG + AL + + FL Y L R P + I A EDEDV E + + + V KE ++V + ++AV+ VS ++ ECFG LGLNGAGK++ F +LT E T+G + +GYCP+ +++ +T REML +Y ++RGI + K+ +DL L++ C + SGG KR + +A +G+P +IL+DEP++GMD V +R +W T++R E+G+++++TSHSMEECE LCTRL IM G+F+CLGSP +K KFG + + + + + + AF+ FP H N + + + +LS + QA +ED ++S+ SL+++F+NF +S +E Sbjct: 1024 FNNQAYHSPSLALTLVDNLLFKL------LSGANASITTTNYPQPQTAIEVSESILYQGPKGHYLVVNFLFGIAFLSSSFSILTVGEKSVKSKSLQFVSGVSTAVFWLSALLWDLISFLVPTLLLVLVFLWYKEEAFAHHESIPAVVLIMMLYGWAVIPLVYTVSFSFNTPGSACVKLVVMLTFLSISPVVLVTVTSEKDLGYT-----ELSDSLDHIFLILPGHCLGMALSNLYYNFELKKFCSAKNLSDIDCNDVLEGYVVQENIY----AWESLGIGKYLTALAVLGPVYITMLFLTEANAFYVLKSRLSGFFPSFWKEKSGMIFDVAEPEDEDVLEEAETIKRYLETLVKKNPLVVKEVSKVYKDKVPLLAVNKVSFVVKEEECFGLLGLNGAGKTSIFNMLTSEQPITSGDAFVKGFNIKSDIAKVRQWIGYCPEFDALLNFMTGREMLVMYARIRGI-----PECHIKACVDLILENLLMCVCADKLVKTYSGGNKRMLSTGIALVGEPAVILLDEPSTGMDPVARRLLWDTVERVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGISYSLQAKVRRKWQQQMLEEFKAFVDLTFPGSNLEDEHQNMLQYYLPGPNLSWAKVFSIMEQAKKDYMLEDYSISQLSLEDIFLNFTRPESSTKEQ 1687 HSP 2 Score: 148.673 bits (374), Expect = 1.523e-35 Identity = 92/336 (27.38%), Postives = 167/336 (49.70%), Query Frame = 0 Query: 399 LSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLN---------PPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSIL---NLKRHHNTITFNVQCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVN-----------FAEKKSHGEENPRLGRV 711 + ++ K F + + A+ +S+ + G+ LG NGAGK+T +LTG + P+ GH ++ +G+CPQ + + TV + L Y Q++G+ +D + + + LGL + + R LSGG KRK+ +A + K++++DEPTSG+D+ ++R +W +Q+Q + R+V++T+H M+E + L R+ I+A G+ QC GSP+ +K+K+G G+++ + + +Y P+ + N+ ++ + Q LGI S T+++EVF+ EK+ PR RV Sbjct: 521 IQHLYKVFYSGRSKRTAIRDLSMNLYKGQVTVLLGHNGAGKTTVCSVLTGLITPSKGHAYIHGCEISKDMVQIRKSLGWCPQHDILFDNFTVTDHLYFYGQLKGLSPQDCHEQTQEMLHLLGLKDKWNSRSKFLSGGMKRKLSIGIALIAGSKVLILDEPTSGLDSPSRRAIWDLLQQQ-KGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGSPSFLKQKYGAGYYMTIIKTPLCDTSKLSEVIYHHIPNAVLESNIGEEMIVTLPKKTIHRFEALFNDLELRQTELGISTFATSVTTMEEVFIRVCKLADPSTNVLTEKRHSLHPLPRHHRV 855
BLAST of abca2 partial vs. SwissProt
Match: gi|1035995929|sp|E9PU17.1|ABCAH_RAT (RecName: Full=ATP-binding cassette sub-family A member 17) HSP 1 Score: 243.432 bits (620), Expect = 9.447e-67 Identity = 190/685 (27.74%), Postives = 327/685 (47.74%), Query Frame = 0 Query: 71 YNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILL-LTTIILDVLYAIK--AARQAREVLHWIFLFVPSYSLGEGLLVLATNF--------------ITNELFDSVEYPSNRY--------KPPLSWAVLGPNVLILAL--ETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATG-EDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRR---IVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKAR---KFVASSVAFLYARFPSILNLKRHHNTITFNVQCRSLS--VIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENPRLGR 710 +NN+ H+ PS A+ + +L + A+ ITT N+P T +L+ T + Q + V L +F+ SS + E++ + K +Q ++GVS +W AL+ DL L ++ +V + ++ + P V+++M Y A LVY + F P G C +++ + L ++ ++L + + K + + L IFL P + LG L NF N++ + N Y K + A+LGP + L E F L ++ LR + TG EDEDV E + + + V KE ++V + ++AV+ VS ++ ECFG LGLNGAGK++ F +LT E T+G + +GYCP+ +++ +T REML ++ ++RGI + ++ + +L + S G KR + A+A LG+P +IL+DEP++GMD V +R VW + R E+G+++++TSHSMEECE LCTRL IM G+F+CLGSP +K +FG G+ + + + + + AF+ FP H + + + + ++LS ++G + + +ED ++S+ SL+++F++F +EN + G+ Sbjct: 1030 FNNQAYHS-PSLALALVDNVLFKLLSGANA-----SITTTNYPQPQTAMELSETILYQGPKGHYLVVNFLFGIAFLSSSFSILTVGEKSIKSKNLQFLSGVSMAAFWLSALLWDLISFLVPTLLLVLVFFWYKEEAFAHPQSIPAVVLIMMLYGWAIIPLVYTVSFSFKTPGSG-----CVKLVAMLTFLSISPVVLVTVTSEKDLGYTELSDTLDHIFLIFPGHCLGMAFSNLYYNFEIKKFCNAKNLSDIDCNDVLEGYVVQKNIYAWESLGIGKYLTALAILGPVYITLLFLTEANAFCALKARLSGFFCKQKLR--------MLLNVTGAEDEDVLEEAENIKYHLDTLIKKSPLVVKELSKVYKEKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQWIGYCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSRFGSGYSLQAKVRRKWQQQMLEEFKAFVDLTFPGSSLEDEHQSMVQYYLPGQNLSWAKVFGIMEQAKKDYVLEDYSISQLSLEDIFLSFTRPVPDTKENIQQGQ 1695 HSP 2 Score: 162.925 bits (411), Expect = 3.751e-40 Identity = 95/336 (28.27%), Postives = 174/336 (51.79%), Query Frame = 0 Query: 399 LSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCRSL---SVIYGHILPNQALLGIEDVNVSKTSLDEVFVN-----------FAEKKSHGEENPRLGRV 711 + ++ K F + + +AV +S+ + G+ LG NGAGK+T +LTG + P+ GH ++ +G+CPQ + + TV + L Y Q++G+ +D + I + + LGL+ + + R LSGG KRK+ +A + K++++DEPTSGMD+ ++R +W +Q+Q + R+V++T+H M+E + L R+ I+A G+ QC G+P+ +K+K+G G+++ + +Y P+ + R + F + +++ ++ + Q LGI S T+++EVF+ EK+ PR RV Sbjct: 527 IQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQ-KGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFLKQKYGAGYYMTIIKTPLCDTEKLAKVIYHHIPNAILESRIGEEMIFTLPKKAMPRFEALFADLEQRQTELGISTFGASVTTMEEVFIRVCKLADPSTNVLTEKRPSLRHLPRNHRV 861
BLAST of abca2 partial vs. SwissProt
Match: gi|74997327|sp|Q555Z5.1|ABCA4_DICDI (RecName: Full=ABC transporter A family member 4; AltName: Full=ABC transporter ABCA.4) HSP 1 Score: 229.95 bits (585), Expect = 2.620e-62 Identity = 179/663 (27.00%), Postives = 332/663 (50.08%), Query Frame = 0 Query: 69 VWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIK----AARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDS--VEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEY--KLIQRWLRPQRTANPASTIGATGEDEDVALER----QRVNGQTTGDL-----LWLSNVTKEFTRV--QRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPG---------TLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHN-TITFNV-----QCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAE 697 V++N HALP Y+N + + +LR+ V ++ + P+ V A+ + VA + ++ L +FS + +S + ER+ R K++ ++G+ YW LI D T FI+V + + I + + +F + + + + L Y + F+ + + G+I + + IL V +AIK + + +++ + F + + +L + T F D ++Y S + L PN IL L +V+ + L+++Y ++ ++ + +N S I + ED DV+ ER Q ++ T G + +N+ K+F V + +AV + ++ I G+ FG LGLNG GKSTT +++GE+ PT G +LN T +GYC Q +++ LL+ RE L++YC+++G+ + +N + + L+S + SGG KRKV ++A +G P ++L+DE + G+DA KR +W + +++ +++I+T+HS+ EC+ +C +L IM DGK Q LGS IK+KFG G+ I + FK ++++ + V FPS + H + +F + LS I+ +I + + ++D +VS+TS++++F+ + Sbjct: 969 VFFNKDYLHALPIYINFVDSEILRS-VTGKRIQTTSLPFEHIQSPLEV------ASLDVNFVAIVFFIILTLASFSLIAASHAGNISHERSTRVKRLLYISGLRKSIYWLSNLIWDYLQT--FILVIFLTIVIIAVDD-KFRTHFDLYISGVVLFTFSIIPLSYLMSFKFSSHGKAVGAIFAIHFGVGLIFTVISFILRV-WAIKENSISFQFLTDIIEYCFYAISPFFCFSKILAIVTKFPGVSRVDQSFIDYWSFHFG-------LLPNA-ILFLHCIVWITWILLIDYSSEIKGKFTISKLFSN--SPIPDSNEDSDVSNERIIVKQLLDNNTNGGSGNVYPIIFNNLYKKFNSVGNYKSKIAVYNSTLAIPTGQTFGLLGLNGCGKSTTLGMISGEISPTGGKIKLNGYDLIKNRNDALTSIGYCFQFDALIGLLSAREQLELYCRIKGVDESKIKDTVNAFIQMMDLESISNSNTSGYSGGNKRKVSLSIACIGSPSILLLDEISCGVDACVKRFMWNVLM-ELKKNKAIILTTHSIAECQAVCDKLTIMKDGKLQALGSNQHIKDKFGSGYSIEVKFK-KEYLENGVELFLQSFPSASLIDNQHALSASFELPNPPNNPIKLSSIFSNIEQSLKFI-LDDYSVSQTSIEQIFIKLTK 1607 HSP 2 Score: 162.925 bits (411), Expect = 3.422e-40 Identity = 109/369 (29.54%), Postives = 183/369 (49.59%), Query Frame = 0 Query: 386 QRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLN---------PPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKI-INKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLG-DPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCRSLS-VIYGHI----------------LPNQAL----------------LGIEDVNVSKTSLDEVFVNFAEKKSHGEENPRLGR 710 +++ Q + + N+ KEF +AV+ +S+ + +LG NG+GKSTT +LTG +EPT+G +N +G CPQ + + LTV E L+ Y ++G + K+ K +++GL + + G LSGG KRK+C A+AF+G + +IL+DEPTSG+DA +R +W I + EN +++I+ SH +EEC+ L + I+A+G+ +C GS +K +FG G+ +L + + HN+I + +++S +I+ HI LPN+++ L IE+ +S T+L+EVF+ S+ E NP + Sbjct: 481 EKIEHQLERPTISIRNLRKEFKTGDGNRIAVNDLSIDMYKNRIHSFLGPNGSGKSTTLSMLTGMIEPTSGDALINGFDIRNNIDEIRKHLGVCPQSDIIWEQLTVMEHLEFYAALKGFTNSNQRKVEATKIALEVGLGEKLNAPAGTLSGGQKRKLCLAIAFIGPNSDIILIDEPTSGLDASNRRLIWDFILKYREN-KTIILVSHYLEECDILSNTISIIANGELKCNGSSLFLKNRFGVGY-------------------------LLTISKEHNSINNSNLTKTISDIIFNHIPKGSLLSDAGTELCFRLPNESIGNFSNLFKELDDRKKQLSIENYGISITTLEEVFLKII---SNSETNPNFNQ 820
BLAST of abca2 partial vs. SwissProt
Match: gi|75018036|sp|Q8T6J5.1|ABCA2_DICDI (RecName: Full=ABC transporter A family member 2; AltName: Full=ABC transporter ABCA.2) HSP 1 Score: 229.565 bits (584), Expect = 3.700e-62 Identity = 176/658 (26.75%), Postives = 318/658 (48.33%), Query Frame = 0 Query: 60 LGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTA-FSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAA---RQAREVLHWIF-LFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEY--KLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDL-LWLSNVTKEFTRVQRRI--VAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTLM---------GYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNV-----QCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFV 693 + T + +YN H+LP ++N +++A+LR + + GI N P + N++ I ++++ A ++ + S + ERT R K++ ++G YW L+ D + I++T +L GI K+ F + + + +C + L Y L FA + + G+I ++ ++ L + I ++A + + +F + P ++ L F+ +E SV + + S G ++ILA +V+ + ++L+Y +LI + P+ N + ED DV ER R+ D L N+ K F V + AV + ++ I G+ FG LGLNGAGK+TT +L G++ P++G +N + G CPQ +++ TLL+ RE L +YC ++G+ ++++ + + L + + G SGG KRK ++A LG+P ++ +DEP++G DAV ++++W + ++ + +I+TSHSM E E LC R+ IM DGK +CLGS IK KFG G+ + FK ++++ S + + P+ + L H +F + +S ++ + L ++D NVS+TSL+ VF+ Sbjct: 968 VSSTTIDYTAFYNKDYIHSLPVHINLVNDAVLR--------KHNNIGIQVTNMPFKHVLSNFDLASEGMNISSIVYFIIIMMAGYALMAGSFAGNVAQERTNRVKRLLYISGCKKYVYWLSNLVWDYFFSFILILLTTCILA--GIRE-NYKSQFGLMFLCLILFCVSVVPLSYLLSYRFASFGKATGAITAIHFAIGIIFVIISLNLRIQVLIDQDVDFQKAADAVDIVFCILSPLFAYSRIL------FLVSEFPGSVRVGTLKVDNYWSMDYGGSPMIILAAHCIVWVSWIMILDYTPELIGKIRNPK---NIEAPPPPDDEDSDVTAERTRLLSVGPNDEPLQFRNLHKLFPAVGKAAPKAAVYNSTLSIPKGQTFGLLGLNGAGKTTTIAMLCGDIVPSSGEVTINGHDLITDRGQALRSNGLCPQFDALITLLSAREQLTLYCAIKGVPEDKVKEVVEAFIKMMDLGAIANSNTGGYSGGNKRKTSLSIAMLGNPSIVSLDEPSTGCDAVVRKYIWNVVS-ELAKDKVIILTSHSMAEVEALCYRMTIMRDGKMKCLGSIQHIKSKFGAGYTFDVKFK-KEYLDSGIQTVLKAIPNSIVLDEHDVMASFEIPNPPDNPVKISTLFESL---SHLTILDDYNVSQTSLESVFL 1600 HSP 2 Score: 151.754 bits (382), Expect = 1.547e-36 Identity = 99/345 (28.70%), Postives = 179/345 (51.88%), Query Frame = 0 Query: 372 IGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALT---FKARKFVASSVA-FLYARFPSILNLKRHHNTITFNVQCRSL---SVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKS 700 I +T ++EDV + V + T + + N+ KE+ VAV+ + + + + LG NG+GKSTT ++TG PT G+ ++ G L +G CPQ + + LTV + LK+Y ++G+ + ++ K +++ L + + G+LSGG KRK+C +AF+G +I +DE +SGMD +++R VW + + + GR++I+T+H +EE ++L R+ I++ GK +C GS +K KFG G+ + + F A V F++ P L +++ + SL + + G+ +S T+L+EVF++ + + Sbjct: 462 IESTYQNEDVEMTPVGVGQKVT---ISIRNLRKEYNTGDGLRVAVNDLYLDMYENQIHALLGPNGSGKSTTIGMMTGLTPPTNGNAFVHGYGILNQMSSVRKHLGVCPQTDIIWQQLTVLDHLKIYASLKGVSPSEIQREAEKMAVEVDLGEKIHSQAGSLSGGQKRKLCLGIAFIGRSDVIFLDEVSSGMDPLSRRVVWDFLLK-YKKGRTIILTTHYLEEADYLGDRIAIISHGKLRCDGSSLYLKNKFGCGYLLTCSKILSSMNNFNAQQVTEFIHNYIPEATILSNAGTELSYRLPTASLPHFAQFFREFDDRLQSFGLLTYGISVTTLEEVFLSLGREAA 802
BLAST of abca2 partial vs. nr
Match: gi|586962490|gb|AHK05633.1| (ATP-binding cassette transporter sub-family A member 13 [Tigriopus japonicus]) HSP 1 Score: 842.032 bits (2174), Expect = 0.000e+0 Identity = 411/708 (58.05%), Postives = 532/708 (75.14%), Query Frame = 0 Query: 10 PRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAAR---QAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQT----------TGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFA---EKKSH 701 PR +MN+TDV+FD+T+Q P+ WILN+H QF+D+RFGGWS+ SP S +GGT ENL+VWYNNKG HA+PSYLNA+HNAMLR TV ++ + +QFGITT+NHP+++ + TIIQNVADIGIA+M+LT+FSFVPSS I+Y+ITER QREKQVQ+VAGVSP+TYW I DL V L + +VTGIV QIF IGSYT K+NF VL+LMFF+C+AS ++VYC+EK F+EPSLGQL VLC+N+L G++LL+ I+LD+LYAIKA + R L+ IF F P+YSLG GLL LATN+IT E+ +S Y + YKPP S+ V+G N+LILALET+ FF NLV+EYKL+ W + P T ED DV ERQRV Q DLL + N++K F + +AV++VSVGI+ GECFGW+GLNGAGKSTTFK+LTGE++P+AG YQLNPP TL GYCPQEN++D LLTVRE L+VYCQVRG+ +DS+K I+ S++DL LD+Q + C +LSGGTKRKVCAAVAFLG PKLILMDEPTSGMDA TKR VW+ IQR+VE G +VI+T+HSMEECE LC+RL IMA+G+ +C+GSP +K+KFG+G+ + L+F++ ++ L + F I N+ +H+ ++FN+Q S I+ I+P Q LGI ++NV+ T+LDEVFV FA +K+SH Sbjct: 2415 PRMIMNTTDVIFDLTDQPSPSHWILNSHTQFIDKRFGGWSIGEPSPSSEVIGGTTENLIVWYNNKGVHAVPSYLNAIHNAMLRTTVAESEQDPTQFGITTYNHPLLLNAKEATTATIIQNVADIGIALMMLTSFSFVPSSFISYVITERIQREKQVQIVAGVSPLTYWCSTFIWDLGVILIYTIVTGIVFQIFKIGSYTDKSNFSAVLVLMFFFCTASASIVYCIEKWFSEPSLGQLTVLCSNVLLGILLLMIIILLDMLYAIKATMGLGRLRRFLNVIFRFAPAYSLGGGLLALATNYITGEVLESAMYDEDGYKPPFSFDVIGLNILILALETLFFFGLNLVVEYKLLADWCPWWTSPLPQVDSEMTQEDSDVKRERQRVESQQHHPFSYPNVQKPDLLRIKNLSKAFVNGNQTKLAVNNVSVGIKYGECFGWIGLNGAGKSTTFKVLTGEIQPSAGEYQLNPPDTLRGYCPQENALDPLLTVRETLQVYCQVRGLSPQDSKKAIDHSIVDLALDTQGNTMCKDLSGGTKRKVCAAVAFLGQPKLILMDEPTSGMDAGTKRQVWKIIQREVEKGTTVILTTHSMEECEQLCSRLTIMAEGQLKCIGSPQHVKKKFGQGYKVQLSFESLCLAQKALRVLRSMFNRITNVSQHYTNLSFNIQDMPQSEIFARIVPRQKALGITNLNVASTTLDEVFVGFATKPKKQSH 3122 HSP 2 Score: 165.622 bits (418), Expect = 1.734e-38 Identity = 109/373 (29.22%), Postives = 202/373 (54.16%), Query Frame = 0 Query: 363 QRTANPASTIGATGEDE-DVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIV-AVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQL---NPPG------TLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWR-DSEKIINK--SVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSIL-NLKRHHNTITFNVQ--------------CRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENP 706 Q+ N GE+ + ER +V + G + + N+TK+F ++ + AV+++++ + GE LG NGAGKSTT K+LTG T+G+ ++ + P + +G+CPQ++ + L+ RE L+ Y +++GI + E +N +++G E +R NLS G +R+VC ++AF+G K++++DEPTSG+D + +R++W I R ++ R+++MT+H ++E E L R+ I+ G+ GS + +K +FG+G + +T+ + + L ++F S+L N K ++NT+ N Q C+ L+++ I Q + N+ T+L+++F++F NP Sbjct: 1861 QKIENGTQGFSVPGENRTNEQRERNKVKDKIIG--ISMKNITKDFPMLKNKTKRAVNNLTMDLYEGEITVLLGDNGAGKSTTMKLLTGMESLTSGNIEICGYSYPDEWAQIQSKIGFCPQQSVLFPDLSTREHLQFYGKLKGIHNPVELETAVNDLIEAMNIGAAQHEPVR--NLSEGNQRRVCISLAFIGGSKVVILDEPTSGVDPIARRYIWDLITR-FKHERTILMTTHHLDEAEILSDRIAIIHKGELMTDGSLSSLKRQFGDGMKLTITWNNNPRLQETRNHLLSKFWSMLPNAKYYNNTVESNEQFFIPYSQHIMPKGLCQFLAILEKQIEQRQVV----SFNLEGTTLEDIFLSFVMGSREHVNNP 2224
BLAST of abca2 partial vs. nr
Match: gi|926615426|ref|XP_013772792.1| (ATP-binding cassette sub-family A member 1-like [Limulus polyphemus]) HSP 1 Score: 514.227 bits (1323), Expect = 4.382e-160 Identity = 283/711 (39.80%), Postives = 443/711 (62.31%), Query Frame = 0 Query: 10 PRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQ--RWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTG-DLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQL---------NPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFV-ASSVAFLYARFPSILNLKRHHNTITFNVQCRS--LSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705 P + + D+++++T+ N ++LNT+ F++QR+GGWS S +A + VW+ N G HA+P+Y+NA+ NA+LR ++ + +FGIT +NHP+ +T+ QL+ +++ VA++GIA++ L F+F+PSS + YL+ ERTQ EK++Q V GV P YW +LI D+ + + + + +++ F + Y +K N P VL+L+ + A T L+Y LEKLF E S+ +++ C NI G+ +++ ++L + A L +I + P Y+L GL+ LA N I E+F + + Y P S +LG + +ILA+E ++FF+ NL+LE + + + +P T ED DVA ER+RV + + D+L L +++KEF + R VAVD+VS+ I GECFG LG+NGAGK+T F+ILTG+LE T+G+ + + TL+GYCPQ ++VD LLT + L +Y ++RGI +D K++ K++I L S + GNLS GTKRK+C+A++ LG+P+LIL+DEPTSGMD +TKR VW +Q V++ RSV+ TSHSMEEC+ LC+RL IM +GK +CLGSP+ +K K G G+ I + K + F++ FP+ + H N I F++ ++ LSVI+G + N LGI D +VS+T+LD+VFV+FA +++ G E+ Sbjct: 948 PLYDTRTEDIIYNLTDVV-INDYLLNTYPAFIEQRYGGWSAERSGENAA--------MKVWFENSGYHAVPAYMNALSNAILRYNMKVQGQDPREFGITVYNHPLHLTSAQLSRESLLHRVAEVGIALVFLLGFAFIPSSFVVYLVRERTQEEKRLQFVGGVGPALYWFSSLIWDMFLVVIAVCLAAVIIAGFSLPVYVTKLNMPAVLLLLLLFGWAMTPLMYLLEKLFKEASIAFMVLYCINIFIGINIMVANLLLTIFEVDNMADDVMVTLKYIGVLFPQYALIGGLVDLAKNHIQAEIF--AMFGQDTYISPFSMELLGYHYIILAVEGLIFFILNLLLELHFFNCLKSFQHSKPRDPLFT-----EDNDVAEERKRVMSEASKHDVLKLVSLSKEFQSIAGRNVAVDNVSLAIPKGECFGLLGVNGAGKTTLFRILTGQLEATSGNVYIKNKTVEDIVSCSNTLLGYCPQADAVDDLLTPEQHLVIYAKLRGIPPKDVGKVVQKALIKFHLKLYASRKVGNLSRGTKRKLCSAISMLGNPQLILLDEPTSGMDPLTKRLVWNNVQLAVKDQRSVLFTSHSMEECDILCSRLSIMVNGKLKCLGSPHYLKYKLGTGYTITIRMAENKADWGPVINFIHTFFPTSVLRAHHCNMIEFSLPTKNVPLSVIFGCLEENGEELGIRDFSVSQTTLDQVFVSFARQQTDGIED 1642 HSP 2 Score: 158.688 bits (400), Expect = 2.465e-36 Identity = 158/628 (25.16%), Postives = 273/628 (43.47%), Query Frame = 0 Query: 150 LIAYLITERTQREK----QVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGM---------------------ILLLTTIILDVLYAIKAARQAREVLHWIFLF---VPSYSLGEGLLVL------ATNFITNELFDSVEYPSN--RYKP------PLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHY---------QLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKI---INKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKAR-------------------KFVASSVAFLYARFPSILNLKRHHNT-ITFNVQCRS-------LSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFA 696 L+A+LI ER ++ Q+ V G+ P+ W +S L V + ++ +L++ GI Y+ ++ V I + Y A Y + F ++ L + A +LS + +L+ T+ LY + +Q + W ++ +P S+ L + F+ +V + N R +P P W P + + TV F ++ LIQ + N G TG+ G + +L + N + F AV +++ + G LG NGAGK+TT +LTG+ +PT+G + + L+GYCPQ N + LTV+E L + +++GI D +K+ I++ + GL + + + LSGG +R++C A+AF+G KLI++DEPTS +D V +R++W I + +GR++++T+H M+E + L R+ ++ GK C GSP +K +FG G+ + L+ S V L F L+ H + + ++ RS LS ++ H+ N LG +S T+L+EVF+ Sbjct: 125 LVAFLIRERVLEQELHLEQILYVMGLKPLVSWMAWFLSGLVVLTSVVICVVAILKLGGILPYS---DWLVVFIFLMDYALALLMFSYMMSVFFKIATIAALTGIIAYLLSFLPFVLIVTLETHIELWKKLLNCLLMSTSFCYGCLYFTRFEKQGVGI-QWDNIWESPMPGDSMNFALACIMMLVDSVVYFLVAWYVSTVWHAGNKARRQPWYFFLTPRYWGCCRPRRVYIVPPTVPF---SMNTGAYLIQEI---KNLDNCEMATGTTGQ-----------VGISLHNLHVVYNAGRSFQHT-----AVAGLTLELYEGHITTLLGQNGAGKTTTINVLTGQQQPTSGAAFVYGKILPDEFSGVQKLLGYCPQYNILFARLTVKEHLLFFAKLKGIL--DGKKLQQDIDEMLHSTGLWNLQDTQAQFLSGGMQRRLCVALAFVGGSKLIILDEPTSSVDPVARRNIWDLIVK-YRHGRTILLTTHHMDEADILSDRVAMIHRGKLLCYGSPLLLKSQFGCGYQLTLSHHGSDTDHDSDSGRASTNGSDVDSCDMSGVMVLIKSFVPTAQLQEDHGSEMIISLPQRSSDGTPYNLSGLFTHLEENLHKLGFGSYGLSSTTLEEVFLTLC 723
BLAST of abca2 partial vs. nr
Match: gi|919079559|ref|XP_013420949.1| (uncharacterized protein LOC106181188 [Lingula anatina]) HSP 1 Score: 509.605 bits (1311), Expect = 2.830e-155 Identity = 277/715 (38.74%), Postives = 427/715 (59.72%), Query Frame = 0 Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATV-ESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGI---VLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQRR-IVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGF----HIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNV--QCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHG 702 P W N+T+ ++++ ++ D WILNTH+ F+++R+GGWS ++ + VW+NNKG HALPS++NAM N +LRA + E+ + + +GIT NHP+ ++ QL+ T+ Q AD GIAV +L A+SF+P++ + YLITER ++EK++Q V GV P YW AL+ DL L +++ G+ ++ IF I YT++ N P V +L+F Y A +Y K+F + + +++ N+ G++ L+ +L L+ I+ + +L +FL P Y LG GL+ L N + +F + + Y P S+ +L + + LA+E VFF+ L++EYK Q+ PA ED+DV ERQRV +GQT DLL S ++K + RR ++AVD+V+ GI GECFG LG+NGAGK+TTFK+LTG+ + ++G LN +GYCPQ +++D LT RE+L VY +++GI + + +++ ++ L L SGGTKRK+ AVA LG+P ++ MDEPT+GMD VT+R VW TI+R V+ RSV++TSHSM EC+ LCTRL IM +G+F+CLGSP +K K+G G+ +A + S F+ FP + +H N + F++ + LS I+G I + L IED ++S+T+LD+VF+ FAE+++ G Sbjct: 5488 PQHWETNTTETVWNLKDR-DVANWILNTHEMFVEKRYGGWSFDSTKAK------------VWFNNKGHHALPSFVNAMSNLILRANINETVRGDQADYGITVHNHPLALSAQQLSQETLTQKAADTGIAVTILCAYSFIPAAFVIYLITERLRKEKRLQFVNGVGPGLYWFAALVWDL---LQYLIPVGLGIGIIAIFQIDIYTARLNLPAVALLLFMYGWACIPGMYMTVKIFKDSATAYMVLFLTNMGIGILTTLSIFLLSSLFWIEILQDVMVILDKVFLIFPQYCLGGGLVKLTRNQLQANVFSI--FGQDTYVNPFSYEMLAWHFVALAIEGSVFFIITLLIEYKCCGSCCIRQKKPAPADY----KEDDDVGRERQRVISGQTESDLLVSSGLSKVYGNCMRRSVMAVDNVTFGIPRGECFGLLGVNGAGKTTTFKMLTGDTKRSSGFALLNGKNITSDMDNMAQNVGYCPQVDALDDYLTGRELLTVYAKIKGIPGSEIKAVVDTALTKLQLQLYADKAVKTYSGGTKRKLSTAVALLGEPDIVFMDEPTTGMDPVTRRLVWNTIRRVVKEDRSVLLTSHSMAECDTLCTRLAIMVNGQFKCLGSPQHLKSKYGTGYIMKIRVAYQDNGLPDLGSVTDFVQGTFPGVALKGQHGNLLEFHIPSEVAKLSFIFGIIESERERLWIEDYSLSQTTLDQVFIGFAEQQTDG 6180 HSP 2 Score: 130.183 bits (326), Expect = 4.054e-27 Identity = 67/222 (30.18%), Postives = 125/222 (56.31%), Query Frame = 0 Query: 415 AVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVID-----LGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALT 622 AV+ +S+ G+ +LG NGAGK+TT +LTG P+ G + + +G+CPQ+ + L+V+E L+ YC ++G S K I K +D +GL + +LSGG +R++ A+AF+G +++++DEPT+G+D +R +W I ++ R++++++H ++E + + R+ ++ GK C GS +K+ FG G+ + ++ Sbjct: 4962 AVNGLSIDFYQGQITSFLGHNGAGKTTTINMLTGMFPPSEGTAVIYGKDIYSDSSDIRDNLGFCPQQEVLFDFLSVKEHLEFYCGLKG----KSGKFIVKDEVDNMLQNMGLWAMRHEPVSHLSGGMQRRLSVAIAFIGGSQVVILDEPTAGVDPSARRAIWDVILEHRKD-RTILLSTHHLDEADVISDRIAVIHKGKLLCCGSSMYLKKNFGSGYMLTMS 5178
BLAST of abca2 partial vs. nr
Match: gi|14250599|gb|AAH08755.1| (ABCA2 protein, partial [Homo sapiens]) HSP 1 Score: 462.225 bits (1188), Expect = 5.695e-148 Identity = 256/721 (35.51%), Postives = 406/721 (56.31%), Query Frame = 0 Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGG-----------WSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEF-TRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCR--SLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705 PP+ + + D+L DIT + + ++L T +F R+G S T +P + V+YNNKG H++P+YLN+++NA+LRA + + + +GIT NHP+ T+ L+ ++Q D+ IA+ ++ A SFVP+S + +L+ E++ + K +Q V+G +P+ YW + D+ L I+L +F + +YTS NFP VL L Y + T ++Y F PS + ++ N+ G+ + T +L + K + L FL P+Y+LG GL+ +A N NE + + ++ K P W ++ ++ +A+E VV FL ++ +Y ++R PQR P ST +D DVA ERQRV G D++ + N+TK + +R RI+AVD + +G++ GECFG LG+NGAGK++TFK+LTG+ T G +N L +GYCPQ +++ LT RE L++Y ++RGI W+D +++ ++ L L G SGG KRK+ A+A +G P I +DEPT+GMD +R +W I ++ GRSV++TSHSMEECE LCTRL IM +G+ +CLGS +K +FG+G+ I + K+ + V V F FP + +RHH + + ++ SL+ ++ + +LGIED +VS+T+LD VFVNFA+K+S E Sbjct: 91 PPQMRVVAGDILTDITGH-NVSEYLLFTSDRFRLHRYGAITFGNVLKSIPASFGTRAPPMVRKIAVRRAAQVFYNNKGYHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLLQGT-DVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPIIYWLANYVWDMLNYLVPATCCVIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVINLFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYYAKIGQ-FDKMKSPFEWDIVTRGLVAMAVEGVVGFLLTIMCQYNFLRR---PQRM--PVST-KPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKELLQVQQSLGYCPQCDALFDELTAREHLQLYTRLRGISWKDEARVVKWALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQSVKDVVRFFNRNFPEAMLKERHHTKVQYQLKSEHISLAQVFSKMEQVSGVLGIEDYSVSQTTLDNVFVNFAKKQSDNLEQ 802
BLAST of abca2 partial vs. nr
Match: gi|260810768|ref|XP_002600120.1| (hypothetical protein BRAFLDRAFT_118238 [Branchiostoma floridae] >gi|229285406|gb|EEN56132.1| hypothetical protein BRAFLDRAFT_118238 [Branchiostoma floridae]) HSP 1 Score: 456.062 bits (1172), Expect = 2.701e-147 Identity = 249/648 (38.43%), Postives = 376/648 (58.02%), Query Frame = 0 Query: 70 WYNNKGDHALPSYLNAMHNAMLRATVESADME---ASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEFTRVQR--RIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCR--SLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKS 700 WYN+KG H++P+YLN ++NA+LRA + ++ + + +GIT NHP+ T+ +L + I+Q D+ IA+ ++ A SFVP+S + +L+ ER+ + K +Q V+GV+PV YW D+ L I+L IF + +YTS NFP V+ L Y + T ++Y + F PS + ++ N+ G+ + T + + K E + FL P+Y LG GL+ LA N NE + + ++ K P W ++ +++ +A E +VFF ++ EYK + +P+ A I ED DVA ERQR+ G DL+ L+N+TK + +R + AVD + V + GECFG LG+NGAGK+TTFK+LTGE+ T G LN L +GYCPQ +++ LT R L +Y ++RGI W ++++++N ++ L L G LSGG KRK+ A+A +G P LI +DEPT+GMD +R +W I+ ++ GRSVI+TSHSMEECE LCTRL IM +G+F+CLGS +K +FG+G+ I + K V V F FP + +RHHN + + ++ SLS I+ + Q L IED +VS+T+LD VFVNFA+K+S Sbjct: 17 WYNHKGYHSMPTYLNTLNNAILRANIPKSEQDLGNPAAYGITVINHPMNETSTRLTSEYILQG-TDVVIAIFIIVAMSFVPASFVVFLVFERSIKAKHLQFVSGVNPVIYWVSNYAWDMLNYLLPATCCVIILTIFDLPAYTSSTNFPAVVALFLMYGWSITPMMYPVSFWFNVPSHAYVFLIVINLFIGITATVATFMFQLFQYDKDLHAINEYMRKAFLLFPNYCLGRGLMDLAYNEYFNEYYLKIG-QEDKVKSPFDWELVTRSLVAMAAEGLVFFFITILCEYKF---FFKPKYIAVSDEPI--EDEDIDVANERQRILRGDADKDLMKLANLTKVYKTSKRNGQTPAVDRLCVAVPCGECFGLLGVNGAGKTTTFKMLTGEIAVTGGEAFLNGHSILKDIIKVHQSIGYCPQFDALLDELTARGHLTMYARLRGIPWSETDQVVNWALRKLALMPYADKPAGTLSGGNKRKLSTAIALIGFPPLIFLDEPTTGMDPAARRFLWDLIKSIIQTGRSVILTSHSMEECEALCTRLAIMVNGRFKCLGSIQHLKNRFGDGYMITVRVKPGAEVKQVVRFFNRTFPEAVMKERHHNMVQYELKSADLSLSFIFSKMEEVQETLRIEDYSVSQTTLDNVFVNFAKKQS 657
BLAST of abca2 partial vs. nr
Match: gi|957821257|ref|XP_014680948.1| (PREDICTED: uncharacterized protein LOC106820868 [Priapulus caudatus]) HSP 1 Score: 482.256 bits (1240), Expect = 6.837e-146 Identity = 260/714 (36.41%), Postives = 418/714 (58.54%), Query Frame = 0 Query: 5 TTAIPPRWVMNSTDVLFDITNQTDPNT-WILNTHKQFLDQRFGGWSLAT---SSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVN-GQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPG---------TLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARK-FVASSVAFLYARFPSILNLKRHHNTITFNV-QCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHG 702 T +PPRWV N++D+++D+ + T ++L +H++F+ +RFGGW++ S+ +S GT VW++N G H+LPSY N M NA+LR ++ D + S++GITT+NHP+ + QL T+ V D+GIA+ +L AF+ +P++ + + I ER E Q+Q V GVS YW I D+ + + ++ ++L +FG+ Y + N + +L+ Y AS +VY + K+ + S +++ N++ G+ + ++L + I A A +L +FL P Y++ GL+ L N + ++F+ + + YK P + +LG N + LA++ VFFL +++ R + + A EDEDV +ER+RV+ G +LL L ++TK + V R VAV+ + VGI GECFG LG+NGAGK+TTFK+LTG + P+ G LN +GYCPQ N++D+ LT +EM+ Y ++RG+ D+++II K + L +Q+ LSGG KRK+CAA++ LGDP LILMDEPT+GMD T+R VW I + + RSV++TSHSM+EC++LCTRL IM +G+FQCLG+P +K++FG+G+ + + K V V FL F + NT+ F++ + L +I+ + + L +E+ +VS+T LD+VF + ++ G Sbjct: 5598 TGYVPPRWVTNTSDIIYDLRDMPIGLTEYLLKSHQEFIQKRFGGWTVGDTIDSNKDSIRTRGT-----VWFDNTGFHSLPSYFNGMTNAILRQKIKDMDADPSEYGITTYNHPLKMHHEQLNRQTLQGRVHDVGIALTILVAFALIPAAFVVFPIEERNNEEAQLQFVYGVSRSMYWFSTFIFDIGCYIVSVALSIVILNVFGLPEYNDRENLGAISLLLLLYGWASIPIVYIMAKVLRDSSAAYVLIFGINMVIGINTMFLVLLLSLFPKIPALVNAHHILQCVFLVCPQYAMAGGLITLIRNQVETDIFE--RFGLDVYKSPYTMEMLGWNYVALAIQGTVFFLIVILV------NGCRCSFGSQHGKEV-AIKEDEDVRMERKRVHAGGAEDNLLKLFDLTKVYQNVLGRNVAVNKLCVGIPRGECFGLLGVNGAGKTTTFKMLTGHILPSEGEALLNGTSITDGISNMQNAVGYCPQANALDSYLTCKEMMTFYARLRGLHHDDTKEIIKKLLKRFNLYTQKGKVVKQLSGGNKRKLCAAISLLGDPPLILMDEPTTGMDPQTRRLVWNNINSIIRDNRSVVLTSHSMDECDNLCTRLAIMVNGEFQCLGNPQHLKDRFGDGYTLIVKMKRDHGDVMPIVTFLGGHFAGCVFKNHAFNTLEFSIPKTNRLGLIFDIMELARHNLHVENYSVSQTHLDQVFTSLTRHQTDG 6297 HSP 2 Score: 127.872 bits (320), Expect = 2.474e-26 Identity = 89/318 (27.99%), Postives = 155/318 (48.74%), Query Frame = 0 Query: 422 GIQAGE-CFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRG-IRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIAL--TFKARKF--------VASSVAFLYARFPSILNLKRHH---NTITFNVQ-------------CRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHG 702 G + GE C W + ++TT IL+GE T G + Q N +G CPQ + + L++ E L+ Y +++G + + ++ I++ + L + R NLSGG +R++ AVAF+G + +++DEPTSG+D V +RH+W I ++GR++++++H ++E + + R+ I+ GK GS +K K G G+ + + T + R F A AF R +L L R H + ++Q R ++ + N + L IE +S T+L+EVF+ E+ G Sbjct: 5090 GGKDGELCHTWPEHRSSTRTTTINILSGEYPATEGAAYIHGKDVNSQFNDIRGKLGICPQHDILFDGLSIIEHLEFYGKLKGTMNKKKLDEDIHRMLEATDLWDLQQERVENLSGGMRRRLSVAVAFVGGSRTVILDEPTSGIDPVARRHIWDLIS-AYKDGRTIVLSTHHLDEADIMSDRVAIIHQGKLLACGSSLYLKSKLGSGYQLTIRKTLEGRGFGTCSNLHNPAGRSAFDVKR---VLGLVRRHIANAQLVEDLQQEALLLLPNDDDDVRRYHQLFNALDTNASALCIESYGISGTTLEEVFLTLCEQADEG 5403
BLAST of abca2 partial vs. nr
Match: gi|1191057612|ref|XP_020906931.1| (ATP-binding cassette sub-family A member 1-like [Exaiptasia pallida]) HSP 1 Score: 481.1 bits (1237), Expect = 1.114e-145 Identity = 259/728 (35.58%), Postives = 418/728 (57.42%), Query Frame = 0 Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGGWSLATSSPE-SAFLGGTQE----------NLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQT--TGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVA-FLYARFPSILNLKRHHNTITFNVQCRSLSV--IYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEENPRLGRV 711 P +W S D+L ++T + P +L TH Q++ +R+GG + + P + + +Q+ N WY+NKG HALP+Y+N + N +LR + + +++GI+TFNHP+ T QL T I+ D+ +A+ ++ A SFVP+S + +L+ ER + K + +V+GV P YWT D+ L ++ ++ F SYTS NFP +L+ Y A T L+Y +F+ PS ++++CAN+ G+ L T IL++ + L IFL P+Y LG GL+ LA N ++F + N K P SW + G N++ + ++ VFF N+++EY+ +++ + N +T+ + ED+DV ER+RV T + D + L N+TK F + VAV+ + VG+ GECFG LG+NGAGK+TTFK+LTG+L T+G +N L MGYCPQ +++D LLT +E L +Y ++RG+ +K++ + + L + + G SGG KRK+ A+A +G+P ++ MDEPT+GMD +R +W I V+ GR+VI+TSHSMEECE LC R+ IM +G+F+CLGSP +K K+G+G+ + L V+ F+ FP+ + +H N + + + + LSV ++G + N+ + IED +VS+T+LD+VF+NFA+ ++ G ++ R R+ Sbjct: 1671 PRQWTSYSGDILQNVTGRYIPEL-LLKTHDQYIRKRYGGITFGDNIPNLPSSIRESQDPVVKRMISYRNTKAWYDNKGYHALPTYVNVLSNNILRNKAKMKGLNPTEYGISTFNHPMNYTKEQLNDQTFIKQAVDVLVAICVVFALSFVPASFVVFLVNERATKAKHLHMVSGVRPYIYWTANYFWDMCSYLIPAIICVLIFLAFNDESYTSAMNFPPTFLLLLLYGWAVTPLMYPASYIFSVPSTAYIVMICANLFIGINCTLATFILEMFQDDQELIDINNSLKAIFLIFPNYCLGRGLIDLAKNQFM-DIFS--RFGQNLVKDPFSWDITGRNIMAMIIQGFVFFAINVLIEYRF---FIKQRPVKNVVNTL--SEEDDDVKQERRRVVSGTGSSTDAMRLVNLTKIFKVRSKVNVAVNQLCVGVSKGECFGLLGVNGAGKTTTFKMLTGDLPVTSGEAYVNGYSVLSEIHDAHQTMGYCPQFDALDELLTAKEHLYLYARLRGVPEAQIQKVVMSLIARMNLRQYQDVCAGKYSGGNKRKLSTAIALVGNPNIVFMDEPTTGMDPKARRFLWNIITSIVKEGRTVILTSHSMEECEALCNRVAIMVNGQFKCLGSPQHLKNKYGDGYTVVLRVAGPNPKTEQVSEFIKTVFPNAILKDQHLNMLEYQLPSQGLSVANVFGQLEANRKIFNIEDYSVSQTTLDQVFINFAKDQTDGIDDTRPKRL 2389 HSP 2 Score: 139.813 bits (351), Expect = 3.187e-30 Identity = 75/221 (33.94%), Postives = 126/221 (57.01%), Query Frame = 0 Query: 414 VAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG---------HYQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKA 625 +AVD +++ + + +LG NGAGK+TT ILTG PT G ++ +G CPQ N + LTV + L Y ++G+ I K + D+GL+++ NLSGG KRK+ +AF+ K++++DEPT+G+D +R +W + + + GR+V++++H M+E + L R+ I++ GK QC GS +K +G G+++ LT K+ Sbjct: 1114 LAVDGLNLNLYENQITSFLGHNGAGKTTTMSILTGLYPPTHGTAVISGMDIRTDIDLVRKSLGMCPQYNVLFDQLTVEDHLWFYSSLKGMEKSKIPDEIEKFLKDIGLENKRHELACNLSGGMKRKLSVGMAFIAGSKVVILDEPTAGVDPYARRGIWDLLLK-YKPGRTVLLSTHHMDEADVLGDRIAIISQGKLQCCGSSLFLKGHYGNGYYLTLTKKS 1333
BLAST of abca2 partial vs. nr
Match: gi|927143426|ref|XP_013913848.1| (PREDICTED: ATP-binding cassette sub-family A member 2 [Thamnophis sirtalis]) HSP 1 Score: 453.751 bits (1166), Expect = 1.727e-145 Identity = 255/720 (35.42%), Postives = 404/720 (56.11%), Query Frame = 0 Query: 9 PPRWVMNSTDVLFDITNQTDPNTWILNTHKQFLDQRFGG-----------WSLATSSPESAFLGGTQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRV-NGQTTGDLLWLSNVTKEF-TRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHYQLNPPGTL---------MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVAFLYARFPSILNLKRHHNTITFNVQCR--SLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEE 704 PP+ + + D+L DIT + + + ++L T +F R+G S ++P + V+YNNKG H++P+YLNA++NA+LRA + S+ + +GIT NHP+ T+ L+ ++Q D+ IA+ ++ A SFVP+S + +L+ E++ + K +Q V+G PV YW + D+ L I+L +F + +YTS NFP VL L Y + T ++Y F PS + ++ N+ G+ + T +L + K + L FL P+Y+LG GL+ +A N NE + + ++ K P W ++ ++ + +E V F ++ +Y +++ PQR P ST +D DVA ERQRV G D+L + N+TK + +R RI+AVD + +G++ GECFG LG+NGAGK+TTFK+LTG+ T G +N L +GYCPQ +++ LT +E L++Y ++RGI W+D E+++ ++ L LD + SGG KRK+ A+A +G P I +DEPT+GMD +R +W I ++ GRSV++TSHSMEECE LCTRL IM +G+ +CLGS +K +FG+G+ I + K+ V F FP + +RHH + + ++ SL+ ++ + +LGIED +VS+T+LD VFVNFA+K+S E Sbjct: 16 PPQMKVVTGDILVDITGR-NVSEYLLYTSDRFRLHRYGAVTFGNIQRSIPASFGENAPPMLRKIAVRNTAQVYYNNKGYHSMPTYLNALNNAILRANLPSSRGNRAAYGITLTNHPMNKTSASLSLDYLLQG-TDVVIAIFIIVAMSFVPASFVVFLVAEKSIKAKHLQFVSGCDPVIYWLANYVWDMLNYLVPATCCIIILFVFDLPAYTSPTNFPAVLALFLLYGWSMTPIMYPASFWFEVPSSAYVFLIVINLFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYYAKIG-QFDKIKSPFEWDIVTRALVAMTVEGFVGFFITIMCQYNFLRK---PQRF--PVST-KPIEDDVDVATERQRVLRGDADNDMLKIENLTKVYKSRRIGRILAVDRLCMGVRPGECFGLLGVNGAGKTTTFKMLTGDEITTNGEAFINGHSILKELLQVQQSLGYCPQFDALFDELTAQEHLELYTRLRGIPWKDEERVVKWALKKLELDKCANKPASTFSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDIIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLKCLGSIQHLKNRFGDGYMITVRTKSSLNVKEVAQFFSRNFPEAVLKERHHTKVQYQLKSEHISLAQVFSKMEQVVDVLGIEDYSVSQTTLDNVFVNFAKKQSDNLE 726
BLAST of abca2 partial vs. nr
Match: gi|1160141872|ref|XP_020372190.1| (retinal-specific ATP-binding cassette transporter-like isoform X1 [Rhincodon typus]) HSP 1 Score: 450.669 bits (1158), Expect = 2.209e-145 Identity = 241/657 (36.68%), Postives = 384/657 (58.45%), Query Frame = 0 Query: 63 TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTANPASTIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGHY---------QLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVAS-----SVAFLYARFPSILNLKRHHNTITFNVQCRSLSVIYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKSHGEEN 705 T++N+ VW+NNKG HA+ +++N +NA+LRA + A +GIT NHP+ +T QL+ T++ D I++ ++ A SFVP+S + YLI ER K +Q V+G S TYW + D+ V+ ++ F +YTS N P + L+ FY A T ++Y +F+ PS + + C N+ G+ T IL++ +A + ++L I + P + LG GL+ +A N +++ + + Y P W +G N+ +A+E VV+FL NL+++++ L P S + A ED+DVA ER+R+ G D+L + +TK ++ R AVD +SVG++ GECFG LG+NGAGK+TTFK+LTG+++PT+G ++ MGYCPQ +++D LT RE L +Y ++RGI + E++ N + L L G SGG KRK+ A+A +G P ++L+DEPT+GMD ++R +W + + GR+V++TSHSMEECE LCTRL IM +G+F+CLG+ +K KFG+G+ + L K + AS + F + FP L +++HHN I + + SLS I+ ++ N+ L I++ +VS+T+LD+VFVNFA++++ + N Sbjct: 26 TEDNVKVWFNNKGWHAIVAFMNVANNAILRANLPEHHY-AEDYGITVINHPLNLTKEQLSEVTVLTTSLDAVISISVVFAMSFVPASFVLYLIQERVSNAKHLQFVSGTSHTTYWVSNFLWDMCNYSVTTVMVVLIFIGFNKKAYTSPQNLPAFIALLLFYGWAVTPMMYPASFVFSVPSTAYVALSCINLFIGINGSAATFILELFENNRALQMFNKILKNILIIFPHFCLGRGLIDMAMNQAVTDVY--ARFGEDFYFSPFHWEFVGKNLTAMAVEGVVYFLLNLIIQHRFFLTNLPPI-----LSNLPAIEEDDDVAKERERIRGTGKHDILKIKELTKYYSGRNRP--AVDRISVGVRPGECFGLLGVNGAGKTTTFKMLTGDIDPTSGEASVAGYSIFTHIDDVHQNMGYCPQFDAIDDFLTGREHLLLYARLRGIPEDEIEQVANWGIEKLDLAEYADQTAGTYSGGNKRKLSTAIALIGCPPVVLLDEPTTGMDPKSRRFLWNCLLSVIREGRAVVLTSHSMEECEALCTRLAIMVNGQFKCLGTIQHLKYKFGDGYVVTLKIKGTQPGASPDLNPAEEFFKSNFPDSLQIEKHHNMIQYQLSSSSLSKIFQLLISNKEQLKIDEYSVSQTTLDQVFVNFAKQQTAEDNN 672
BLAST of abca2 partial vs. nr
Match: gi|156400722|ref|XP_001638941.1| (predicted protein [Nematostella vectensis] >gi|156226066|gb|EDO46878.1| predicted protein, partial [Nematostella vectensis]) HSP 1 Score: 472.626 bits (1215), Expect = 3.702e-145 Identity = 245/654 (37.46%), Postives = 381/654 (58.26%), Query Frame = 0 Query: 63 TQENLVVWYNNKGDHALPSYLNAMHNAMLRATVESADMEASQFGITTFNHPVMVTTGQLAATTIIQNVADIGIAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALISDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNFITNELFDSVEYPSNRYKPPLSWAVLGPNVLILALETVVFFLFNLVLEYKLIQRWLRPQRTA-NPASTIGATGEDEDVALERQRVN---GQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAGH---------YQLNPPGTLMGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFKARKFVASSVA-FLYARFPSILNLKRHHNTITFNVQCRSLSV--IYGHILPNQALLGIEDVNVSKTSLDEVFVNFAEKKS 700 + N+ +WYNNKG HALP++LN + N +LRA ++ ++ SQ+GIT +NHP+ T QL T ++ D+ +A+ ++ A SFVP+S + +L++ER + K + LV+GV P YW + D+ ++ + FG SYT+ NFP L+ Y + T L+Y F+ S ++++ N+ G+ L T IL++ K VL +FL P+Y LG GL+ LA N +F + N + P SW + G N+ + +E VFF +++EY+ + LRP + P ED+DV ERQRVN G T D L L N+TK + ++RIVAVD + VG+ GECFG LG+NGAGK+TTFK+LTG++ T+G +N MGYCPQ +++D LLT ++ L++Y ++RG+ R K++N + + L + + G SGG KRK+ A+A +G+P ++ MDEPT+GMD +R +W I ++ GR+VI+TSHSMEECE LC R+ IM +G+ +CLGSP +K KFG+G+ + L V F+ FP+ + +HHN + + + C+ LSV ++GH+ N+ + IED +V++T+LD+VF+NFA+ ++ Sbjct: 995 SPRNVKIWYNNKGYHALPAFLNTLSNTVLRAKAKARGLDPSQYGITAYNHPMNYTKEQLDDETFVKRAVDVLVAICVVFALSFVPASFVVFLVSERVSKAKHLHLVSGVKPYIYWLANYVWDMCNYFIPAMLCVFIFLAFGDESYTTAMNFPPTFCLLLLYGWSITPLMYPASHFFSVSSTAYIVLISINLFVGINCTLATFILELFEDDKELTDINTVLKSVFLVFPNYCLGRGLIDLAKNQFLG-IFS--RFGVNLTRDPFSWDITGRNIFAMIIEGFVFFTLTVLIEYRFFIK-LRPVKVVLKPVEE-----EDDDVQRERQRVNSGLGHAT-DALRLMNLTKVYRSRRKRIVAVDRLCVGVPKGECFGLLGVNGAGKTTTFKMLTGDIPVTSGEGFVDGHSILSDINGAHQSMGYCPQFDALDDLLTAKDHLRLYARLRGVPERYIPKVVNSLIQRMNLVQYQDVCAGKYSGGNKRKLSTAIALVGNPAIVFMDEPTTGMDPKARRFLWNIITGIMKEGRTVILTSHSMEECEALCNRVAIMVNGQMKCLGSPQHLKNKFGDGYTVILRVAGSNPDTEQVCQFIIQCFPNAVLKDKHHNMVEYQIPCQGLSVSRLFGHLEANRKMFDIEDYSVTQTTLDQVFINFAKDQT 1638 HSP 2 Score: 155.221 bits (391), Expect = 3.958e-35 Identity = 131/531 (24.67%), Postives = 243/531 (45.76%), Query Frame = 0 Query: 135 IAVMLLTAFSFVPSSLIAYLITERTQREKQVQLVAGVSPVTYWTVALI---SDLAVTLTFIVVTGIVLQIFGIGSYTSKANFPGVLILMFFYCSASTTLVYCLEKLFAEPSLGQLMVLCANILSGMILLLTTIILDVLYAIKAARQAREVLHWIFLFVPSYSLGEGLLVLATNF--ITNELFDSVEYP-----SNRYKPPLSWA--VLGPNVLILALETVVFFLFNLVLE--------------YKLIQRWLRPQRTANPA------STIGATGEDEDVALERQRVNGQTTGDLLWLSNVTKEFTRVQRRIVAVDHVSVGIQAGECFGWLGLNGAGKSTTFKILTGELEPTAG-----HYQLNPPGTL----MGYCPQENSVDTLLTVREMLKVYCQVRGIRWRDSEKIINKSVIDLGLDSQESIRCGNLSGGTKRKVCAAVAFLGDPKLILMDEPTSGMDAVTKRHVWRTIQRQVENGRSVIMTSHSMEECEHLCTRLVIMADGKFQCLGSPNQIKEKFGEGFHIALTFK 624 + + + A+ + + +I ++ E+ +R K+V V G+ +W I S + +T+ F+V+T G ++ + + + + A+ + + + F S + C I+ + L T++ W F+ S + L T F N L E +N Y P++ LG + ++ ++ V++ L +E + L + + PQ+ A+P S GAT + DVA+E + + + L + KE ++ AVD +++ + G+ +LG NGAGK+TT +LTG PT G Y + + +G CPQ N + LTV E L Y ++G+ I K + D+GL ++ NLSGG KRK+ A+AF+ + +++++DEPT+G+D +R +W + + ++ R+V++++H M+E + L R+ I++ GK QC G+ +K +G G+++ LT K Sbjct: 108 MPLFMTLAWIYTAAMIIKSIVYEKEKRLKEVMKVMGLGRTVHWVAWFINSASTMLITIIFLVIT------LKAGRILQHSDPFIIFLFLVVFMFATIMMCFLISVFF---SRANVSAACGGIIFFVTYLPYTMV-----------------RWFEAFMNSSQIAAACLSSTTAFGVACNYLARYEEQGVGAQWNNLYASPIAGDEFSLGYAMGMMMIDGVLYALATFYIEAVMPGQYGIPRPWYFPLQKSYWFPQKPASPDMDDVAFSPDGAT--NNDVAMETEPSHLSMGVSIRNLVKIYKEGKKL-----AVDGLNLNLYEGQILSFLGHNGAGKTTTMSVLTGLFPPTHGTALISGYDIRTDIDMVRRNLGMCPQHNVLFDCLTVEEHLWFYASLKGMEKSRIPGEIEKFLKDVGLTNKRHELSANLSGGMKRKLSVAMAFVAESRVVILDEPTAGVDPYARRSIWDLLLKYKKD-RTVLLSTHHMDEADVLGDRIAIISQGKLQCCGTSLFLKSHYGNGYYLTLTKK 604 The following BLAST results are available for this feature:
BLAST of abca2 partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 11
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BLAST of abca2 partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of abca2 partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold927_size80360:5181..10540- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold927_size80360-snap-gene-0.20 ID=maker-scaffold927_size80360-snap-gene-0.20|Name=abca2 partial|organism=Tigriopus kingsejongensis|type=gene|length=5360bp|location=Sequence derived from alignment at scaffold927_size80360:5181..10540- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'abca2 partial' has the following synonyms
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