poly rna polymerase gld2-a, maker-scaffold959_size76551-snap-gene-0.21 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of poly rna polymerase gld2-a vs. L. salmonis genes
Match: EMLSAG00000008531 (supercontig:LSalAtl2s:LSalAtl2s526:109566:111701:-1 gene:EMLSAG00000008531 transcript:EMLSAT00000008531 description:"maker-LSalAtl2s526-augustus-gene-1.27") HSP 1 Score: 51.6026 bits (122), Expect = 7.437e-8 Identity = 43/130 (33.08%), Postives = 68/130 (52.31%), Query Frame = 0 Query: 128 LEDLVSKTFPGGFAQV--FGSTLNGFGSSSSDMDMCIFL--ITNGVEDQSQLH---RLEFIKQSLFRLRRVIKKDLGHRILPDIEMIP----AKVPILKLHDGLSDVSIDISCNHPIGVRNTHLLYHYSQ 246 LE +S F G F + FGS++N FGS SD+DM I + + SQL+ + F ++++ ++ I +L I+P I + A+VPILK H L ++ D+S + GV + LLY Y + Sbjct: 252 LELCLSGLF-GTFVSILPFGSSVNSFGSCDSDLDMVINFSSLEKNDDSASQLYFHVKGGFGQRNMSQMYIRILANLLQDIVPGIRNVQSISNARVPILKYHHQLLNLECDLSASSLSGVFMSELLYLYGE 380
BLAST of poly rna polymerase gld2-a vs. SwissProt
Match: gi|81883541|sp|Q5U315.1|GLD2_RAT (RecName: Full=Poly(A) RNA polymerase GLD2; AltName: Full=PAP-associated domain-containing protein 4) HSP 1 Score: 64.6994 bits (156), Expect = 7.172e-11 Identity = 49/158 (31.01%), Postives = 76/158 (48.10%), Query Frame = 0 Query: 97 QSQLSTDMARFFLANRQDPEFFRKKIELWASLEDLVSKTFPGGFAQVFGSTLNGFGSSSSDMDMCI--------FLITNGVEDQSQLHRLEFI-KQSLFRLRRVIKKDLGHRILPDIEMIPAKVPILKLHDGLSDVSIDISCNHPIGVRNTHLLYHYS 245 + +LS + F +Q +KK A L+ + FP + GS+LNGFG+ SSD D+C+ F + E + H L + K RL I++ ++I AKVPI+K D +S V D++ N+ +G+RNT LL Y+ Sbjct: 153 KDKLSQQILELFETCQQQASDLKKKELCRAQLQREIQLLFPQSRLFLVGSSLNGFGARSSDGDLCLVVKEEPCFFQVNQKTEAR---HILTLVHKHFCTRLSGYIERP---------QLIRAKVPIVKFRDKVSCVEFDLNVNNTVGIRNTFLLRTYA 298
BLAST of poly rna polymerase gld2-a vs. SwissProt
Match: gi|75099140|sp|O64642.2|URT1_ARATH (RecName: Full=UTP:RNA uridylyltransferase 1) HSP 1 Score: 64.3142 bits (155), Expect = 1.150e-10 Identity = 42/132 (31.82%), Postives = 75/132 (56.82%), Query Frame = 0 Query: 116 EFFRKKIELWASLEDLVSKTFPGGFAQVFGSTLNGFGSSSSDMDMCIFLITNGVEDQSQLHRLEFIKQSLFRLRRVIKKDLGHRILPDIEMIP-AKVPILKLHDGLSDVSIDISCNHPIGVRNTHLLYHYSQ 246 E K+ +L A LE+LV+K +P ++GS N FG SD+D+C+ + + + ++S++ L +L +++ D L +++ + A+VPI+KL D ++ +S DI N+ + V NT LL Y+Q Sbjct: 450 EELEKQRQLMAHLENLVAKEWPHAKLYLYGSCANSFGFPKSDIDVCLAIEGDDI-NKSEM---------LLKLAEILESD----NLQNVQALTRARVPIVKLMDPVTGISCDICINNVLAVVNTKLLRDYAQ 567
BLAST of poly rna polymerase gld2-a vs. SwissProt
Match: gi|122135693|sp|Q2HJ44.1|GLD2_BOVIN (RecName: Full=Poly(A) RNA polymerase GLD2; AltName: Full=PAP-associated domain-containing protein 4) HSP 1 Score: 62.7734 bits (151), Expect = 3.312e-10 Identity = 49/158 (31.01%), Postives = 76/158 (48.10%), Query Frame = 0 Query: 97 QSQLSTDMARFFLANRQDPEFFRKKIELWASLEDLVSKTFPGGFAQVFGSTLNGFGSSSSDMDMCI--------FLITNGVEDQSQLHRLEFI-KQSLFRLRRVIKKDLGHRILPDIEMIPAKVPILKLHDGLSDVSIDISCNHPIGVRNTHLLYHYS 245 + +LS + F A +Q +KK L+ + FP + GS+LNGFG+ SSD D+C+ F + E + H L + K RL I++ ++I AKVPI+K D +S V D++ N+ +G+RNT LL Y+ Sbjct: 153 KDKLSQQILELFEACQQQVSDLKKKELCRTELQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEAR---HILTLVHKHFCTRLSGYIERP---------QLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYA 298
BLAST of poly rna polymerase gld2-a vs. SwissProt
Match: gi|74737798|sp|Q6PIY7.1|GLD2_HUMAN (RecName: Full=Poly(A) RNA polymerase GLD2; Short=hGLD-2; AltName: Full=PAP-associated domain-containing protein 4; AltName: Full=Terminal uridylyltransferase 2; Short=TUTase 2) HSP 1 Score: 60.8474 bits (146), Expect = 1.510e-9 Identity = 48/158 (30.38%), Postives = 75/158 (47.47%), Query Frame = 0 Query: 97 QSQLSTDMARFFLANRQDPEFFRKKIELWASLEDLVSKTFPGGFAQVFGSTLNGFGSSSSDMDMCI--------FLITNGVEDQSQLHRLEFI-KQSLFRLRRVIKKDLGHRILPDIEMIPAKVPILKLHDGLSDVSIDISCNHPIGVRNTHLLYHYS 245 + +LS + F +Q +KK L+ + FP + GS+LNGFG+ SSD D+C+ F + E + H L + K RL I++ ++I AKVPI+K D +S V D++ N+ +G+RNT LL Y+ Sbjct: 153 KDKLSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEAR---HILTLVHKHFCTRLSGYIERP---------QLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYA 298
BLAST of poly rna polymerase gld2-a vs. nr
Match: gi|954574601|ref|XP_014611640.1| (PREDICTED: poly(A) RNA polymerase gld-2 homolog A-like isoform X1 [Polistes canadensis]) HSP 1 Score: 119.013 bits (297), Expect = 6.604e-27 Identity = 67/173 (38.73%), Postives = 105/173 (60.69%), Query Frame = 0 Query: 74 KYLSLSTTIQMDLPPCAWEESSKQSQLSTDMARFFLANRQDPEFFRKKIELWASLEDLVSKTFPGGFAQVFGSTLNGFGSSSSDMDMCIFLITNGVEDQSQLHRLEFIKQSLFRLRRVIKKDLGHRILPDIEMIPAKVPILKLHDGLSDVSIDISCNHPIGVRNTHLLYHYSQ 246 ++L+ S ++++ P S +LS D+ + F+ N+Q +R K+ LW L L+ TFP + GST+NGFGS +SD+DMC+ L+ + DQ R E I L ++ R +K+ I+ +E+I AKVPILK HD + ++ +D++CN+ +G+RNTHLLY YSQ Sbjct: 297 RFLARSHLVEVNYTPADLITGSTWDKLSQDIWKKFITNQQTEVVYRNKMNLWKYLYVLIKGTFPKYGLFLVGSTMNGFGSDNSDVDMCL-LVRHTEMDQ----RNEAIGH-LDQILRCLKRS---DIITQLELIQAKVPILKFHDAMQNLDVDLNCNNAVGIRNTHLLYCYSQ 460
BLAST of poly rna polymerase gld2-a vs. nr
Match: gi|954574605|ref|XP_014611643.1| (PREDICTED: poly(A) RNA polymerase gld-2 homolog A-like isoform X3 [Polistes canadensis]) HSP 1 Score: 119.013 bits (297), Expect = 6.651e-27 Identity = 67/173 (38.73%), Postives = 105/173 (60.69%), Query Frame = 0 Query: 74 KYLSLSTTIQMDLPPCAWEESSKQSQLSTDMARFFLANRQDPEFFRKKIELWASLEDLVSKTFPGGFAQVFGSTLNGFGSSSSDMDMCIFLITNGVEDQSQLHRLEFIKQSLFRLRRVIKKDLGHRILPDIEMIPAKVPILKLHDGLSDVSIDISCNHPIGVRNTHLLYHYSQ 246 ++L+ S ++++ P S +LS D+ + F+ N+Q +R K+ LW L L+ TFP + GST+NGFGS +SD+DMC+ L+ + DQ R E I L ++ R +K+ I+ +E+I AKVPILK HD + ++ +D++CN+ +G+RNTHLLY YSQ Sbjct: 283 RFLARSHLVEVNYTPADLITGSTWDKLSQDIWKKFITNQQTEVVYRNKMNLWKYLYVLIKGTFPKYGLFLVGSTMNGFGSDNSDVDMCL-LVRHTEMDQ----RNEAIGH-LDQILRCLKRS---DIITQLELIQAKVPILKFHDAMQNLDVDLNCNNAVGIRNTHLLYCYSQ 446
BLAST of poly rna polymerase gld2-a vs. nr
Match: gi|954574603|ref|XP_014611642.1| (PREDICTED: poly(A) RNA polymerase gld-2 homolog A-like isoform X2 [Polistes canadensis]) HSP 1 Score: 118.627 bits (296), Expect = 8.050e-27 Identity = 67/173 (38.73%), Postives = 105/173 (60.69%), Query Frame = 0 Query: 74 KYLSLSTTIQMDLPPCAWEESSKQSQLSTDMARFFLANRQDPEFFRKKIELWASLEDLVSKTFPGGFAQVFGSTLNGFGSSSSDMDMCIFLITNGVEDQSQLHRLEFIKQSLFRLRRVIKKDLGHRILPDIEMIPAKVPILKLHDGLSDVSIDISCNHPIGVRNTHLLYHYSQ 246 ++L+ S ++++ P S +LS D+ + F+ N+Q +R K+ LW L L+ TFP + GST+NGFGS +SD+DMC+ L+ + DQ R E I L ++ R +K+ I+ +E+I AKVPILK HD + ++ +D++CN+ +G+RNTHLLY YSQ Sbjct: 290 RFLARSHLVEVNYTPADLITGSTWDKLSQDIWKKFITNQQTEVVYRNKMNLWKYLYVLIKGTFPKYGLFLVGSTMNGFGSDNSDVDMCL-LVRHTEMDQ----RNEAIGH-LDQILRCLKRS---DIITQLELIQAKVPILKFHDAMQNLDVDLNCNNAVGIRNTHLLYCYSQ 453
BLAST of poly rna polymerase gld2-a vs. nr
Match: gi|972209035|ref|XP_015186859.1| (PREDICTED: poly(A) RNA polymerase gld-2 homolog A-like isoform X1 [Polistes dominula] >gi|972209037|ref|XP_015186860.1| PREDICTED: poly(A) RNA polymerase gld-2 homolog A-like isoform X1 [Polistes dominula] >gi|972209039|ref|XP_015186861.1| PREDICTED: poly(A) RNA polymerase gld-2 homolog A-like isoform X1 [Polistes dominula]) HSP 1 Score: 115.931 bits (289), Expect = 8.595e-26 Identity = 66/173 (38.15%), Postives = 104/173 (60.12%), Query Frame = 0 Query: 74 KYLSLSTTIQMDLPPCAWEESSKQSQLSTDMARFFLANRQDPEFFRKKIELWASLEDLVSKTFPGGFAQVFGSTLNGFGSSSSDMDMCIFLITNGVEDQSQLHRLEFIKQSLFRLRRVIKKDLGHRILPDIEMIPAKVPILKLHDGLSDVSIDISCNHPIGVRNTHLLYHYSQ 246 ++L+ S ++++ P S +LS D+ + F+ N+Q +R K+ LW L L+ TFP + GST+NGFGS +SD+DMC+ L+ + DQ R E I L ++ R +K+ I+ + +I AKVPILK HD + ++ +D++CN+ +G+RNTHLLY YSQ Sbjct: 297 RFLARSHLVEVNYTPADLITGSTWDKLSQDIWKKFITNQQTEVVYRNKMNLWKYLYVLIKGTFPKYGLFLVGSTMNGFGSDNSDVDMCL-LVRHTEMDQ----RNEAIGH-LDQILRCLKRS---DIITKLVLIQAKVPILKFHDAMQNLDVDLNCNNAVGIRNTHLLYCYSQ 460
BLAST of poly rna polymerase gld2-a vs. nr
Match: gi|972209045|ref|XP_015186864.1| (PREDICTED: poly(A) RNA polymerase gld-2 homolog A-like isoform X4 [Polistes dominula]) HSP 1 Score: 115.546 bits (288), Expect = 8.634e-26 Identity = 66/173 (38.15%), Postives = 104/173 (60.12%), Query Frame = 0 Query: 74 KYLSLSTTIQMDLPPCAWEESSKQSQLSTDMARFFLANRQDPEFFRKKIELWASLEDLVSKTFPGGFAQVFGSTLNGFGSSSSDMDMCIFLITNGVEDQSQLHRLEFIKQSLFRLRRVIKKDLGHRILPDIEMIPAKVPILKLHDGLSDVSIDISCNHPIGVRNTHLLYHYSQ 246 ++L+ S ++++ P S +LS D+ + F+ N+Q +R K+ LW L L+ TFP + GST+NGFGS +SD+DMC+ L+ + DQ R E I L ++ R +K+ I+ + +I AKVPILK HD + ++ +D++CN+ +G+RNTHLLY YSQ Sbjct: 224 RFLARSHLVEVNYTPADLITGSTWDKLSQDIWKKFITNQQTEVVYRNKMNLWKYLYVLIKGTFPKYGLFLVGSTMNGFGSDNSDVDMCL-LVRHTEMDQ----RNEAIGH-LDQILRCLKRS---DIITKLVLIQAKVPILKFHDAMQNLDVDLNCNNAVGIRNTHLLYCYSQ 387
BLAST of poly rna polymerase gld2-a vs. nr
Match: gi|972209043|ref|XP_015186863.1| (PREDICTED: poly(A) RNA polymerase gld-2 homolog A-like isoform X3 [Polistes dominula]) HSP 1 Score: 115.546 bits (288), Expect = 9.136e-26 Identity = 66/173 (38.15%), Postives = 104/173 (60.12%), Query Frame = 0 Query: 74 KYLSLSTTIQMDLPPCAWEESSKQSQLSTDMARFFLANRQDPEFFRKKIELWASLEDLVSKTFPGGFAQVFGSTLNGFGSSSSDMDMCIFLITNGVEDQSQLHRLEFIKQSLFRLRRVIKKDLGHRILPDIEMIPAKVPILKLHDGLSDVSIDISCNHPIGVRNTHLLYHYSQ 246 ++L+ S ++++ P S +LS D+ + F+ N+Q +R K+ LW L L+ TFP + GST+NGFGS +SD+DMC+ L+ + DQ R E I L ++ R +K+ I+ + +I AKVPILK HD + ++ +D++CN+ +G+RNTHLLY YSQ Sbjct: 283 RFLARSHLVEVNYTPADLITGSTWDKLSQDIWKKFITNQQTEVVYRNKMNLWKYLYVLIKGTFPKYGLFLVGSTMNGFGSDNSDVDMCL-LVRHTEMDQ----RNEAIGH-LDQILRCLKRS---DIITKLVLIQAKVPILKFHDAMQNLDVDLNCNNAVGIRNTHLLYCYSQ 446
BLAST of poly rna polymerase gld2-a vs. nr
Match: gi|1233174405|ref|XP_022188463.1| (poly(A) RNA polymerase gld-2 homolog A-like [Nilaparvata lugens]) HSP 1 Score: 114.005 bits (284), Expect = 9.836e-26 Identity = 62/173 (35.84%), Postives = 98/173 (56.65%), Query Frame = 0 Query: 74 KYLSLSTTIQMDLPPCAWEESSKQSQLSTDMARFFLANRQDPEFFRKKIELWASLEDLVSKTFPGGFAQVFGSTLNGFGSSSSDMDMCIFLITNGVEDQSQLHRLEFIKQSLFRLRRVIKKDLGHRILPDIEMIPAKVPILKLHDGLSDVSIDISCNHPIGVRNTHLLYHYSQ 246 K+LS + ++Q+ PP S +LS + FL N+Q E + KK+ LW SL + +P + GST++GFGS++SD+DMC+ + + +E +S ++L+ L V+ +IE+I AKVPILK ++ +D+SCN+ +GVRNTHLLY Y+ Sbjct: 66 KFLSNTNSVQITKPPPQLTNGSVWDELSKAVWNKFLTNQQTKETYEKKLTLWKSLYVYLKTVYPRYSLFMVGSTMSGFGSNTSDIDMCLIVKQSEMEQRS---------EALYHLSHVMNLFNEFDFFTNIELIHAKVPILKFKSVTDELDVDLSCNNTVGVRNTHLLYCYAN 229
BLAST of poly rna polymerase gld2-a vs. nr
Match: gi|972209041|ref|XP_015186862.1| (PREDICTED: poly(A) RNA polymerase gld-2 homolog A-like isoform X2 [Polistes dominula]) HSP 1 Score: 115.546 bits (288), Expect = 1.060e-25 Identity = 66/173 (38.15%), Postives = 104/173 (60.12%), Query Frame = 0 Query: 74 KYLSLSTTIQMDLPPCAWEESSKQSQLSTDMARFFLANRQDPEFFRKKIELWASLEDLVSKTFPGGFAQVFGSTLNGFGSSSSDMDMCIFLITNGVEDQSQLHRLEFIKQSLFRLRRVIKKDLGHRILPDIEMIPAKVPILKLHDGLSDVSIDISCNHPIGVRNTHLLYHYSQ 246 ++L+ S ++++ P S +LS D+ + F+ N+Q +R K+ LW L L+ TFP + GST+NGFGS +SD+DMC+ L+ + DQ R E I L ++ R +K+ I+ + +I AKVPILK HD + ++ +D++CN+ +G+RNTHLLY YSQ Sbjct: 290 RFLARSHLVEVNYTPADLITGSTWDKLSQDIWKKFITNQQTEVVYRNKMNLWKYLYVLIKGTFPKYGLFLVGSTMNGFGSDNSDVDMCL-LVRHTEMDQ----RNEAIGH-LDQILRCLKRS---DIITKLVLIQAKVPILKFHDAMQNLDVDLNCNNAVGIRNTHLLYCYSQ 453
BLAST of poly rna polymerase gld2-a vs. nr
Match: gi|1000752316|ref|XP_015599030.1| (PREDICTED: poly(A) RNA polymerase gld-2 homolog A-like isoform X4 [Cephus cinctus]) HSP 1 Score: 111.694 bits (278), Expect = 1.738e-24 Identity = 63/173 (36.42%), Postives = 99/173 (57.23%), Query Frame = 0 Query: 74 KYLSLSTTIQMDLPPCAWEESSKQSQLSTDMARFFLANRQDPEFFRKKIELWASLEDLVSKTFPGGFAQVFGSTLNGFGSSSSDMDMCIFLITNGVEDQSQLHRLEFIKQSLFRLRRVIKKDLGHRILPDIEMIPAKVPILKLHDGLSDVSIDISCNHPIGVRNTHLLYHYSQ 246 ++L+ S IQ+ P S LS D+ F++N+Q +R K+ LW L + TFP + GST+NGFGS +SD+DMC+ L+ + DQ +++ L +++K + +E+I AKVPILK HD + ++ +D++CN+ +G+RNTHLLY YSQ Sbjct: 220 RFLARSHLIQVTHVPKDLLNGSHWDDLSRDVWEKFMSNQQTETTYRNKMMLWKYLYIYIKSTFPKYGLFLVGSTMNGFGSDNSDVDMCL-LVRHTEMDQR--------NEAIGHLEQILKCLKKCDFIEQLELIQAKVPILKFHDSMQNLEVDLNCNNAVGIRNTHLLYCYSQ 383
BLAST of poly rna polymerase gld2-a vs. nr
Match: gi|755981657|ref|XP_011309656.1| (PREDICTED: poly(A) RNA polymerase gld-2 homolog A-like [Fopius arisanus] >gi|755981660|ref|XP_011309657.1| PREDICTED: poly(A) RNA polymerase gld-2 homolog A-like [Fopius arisanus]) HSP 1 Score: 112.079 bits (279), Expect = 1.825e-24 Identity = 62/158 (39.24%), Postives = 91/158 (57.59%), Query Frame = 0 Query: 89 CAWEESSKQSQLSTDMARFFLANRQDPEFFRKKIELWASLEDLVSKTFPGGFAQVFGSTLNGFGSSSSDMDMCIFLITNGVEDQSQLHRLEFIKQSLFRLRRVIKKDLGHRILPDIEMIPAKVPILKLHDGLSDVSIDISCNHPIGVRNTHLLYHYSQ 246 C W+E LS DM FL N+Q FR K+ LW L + T+P + GST+NGFG+ SSD+DMC+ V + + R E I L +++ +K + + +I AKVPILK HDG+ ++ ID++CN+ +G+RNTH+LY YS+ Sbjct: 303 CRWDE------LSRDMWNKFLGNQQSEATFRNKMMLWKYLYIYIKSTYPRYGLFLVGSTMNGFGADSSDVDMCLL-----VRNTEMIQRNEAICH-LDQIKACLK---NCDFIDQLTLIQAKVPILKFHDGMQNLDIDLNCNNAVGIRNTHMLYCYSR 445 The following BLAST results are available for this feature:
BLAST of poly rna polymerase gld2-a vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of poly rna polymerase gld2-a vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 14
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BLAST of poly rna polymerase gld2-a vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold959_size76551:29716..30592- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold959_size76551-snap-gene-0.21 ID=maker-scaffold959_size76551-snap-gene-0.21|Name=poly rna polymerase gld2-a|organism=Tigriopus kingsejongensis|type=gene|length=877bp|location=Sequence derived from alignment at scaffold959_size76551:29716..30592- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'poly rna polymerase gld2-a' has the following synonyms
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