g1 s-specific cyclin- partial, maker-scaffold96_size378025-snap-gene-1.20 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of g1 s-specific cyclin- partial vs. L. salmonis genes
Match: EMLSAG00000000386 (supercontig:LSalAtl2s:LSalAtl2s1060:22308:23429:-1 gene:EMLSAG00000000386 transcript:EMLSAT00000000386 description:"maker-LSalAtl2s1060-augustus-gene-0.9") HSP 1 Score: 55.8398 bits (133), Expect = 2.885e-9 Identity = 46/146 (31.51%), Postives = 73/146 (50.00%), Query Frame = 0 Query: 16 LIARSDPNPFRILQ--SMELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQQDLESQPPMGPTVN-LNDVVQKLRKYTEIEMDSLRHCIDQIEE 158 L+ +D N IL+ EL++L+ L+WDL AVT Y LD+LL L E E++RR +E + L T+ F P+ VA + L +A++ G V+ L+ V++ L T + +++ C+DQIEE Sbjct: 142 LVIYTD-NSVSILEITQWELILLNVLEWDLSAVTPYGILDHLLRTLNI------------ESSSSETIRRHAETFVALXATEFVFXQHGPAAVAVSCLGAALR---------GLNVSTLSSVLEHLHYTTGVNTITIKDCMDQIEE 265
BLAST of g1 s-specific cyclin- partial vs. L. salmonis genes
Match: EMLSAG00000003477 (supercontig:LSalAtl2s:LSalAtl2s18:214560:217374:1 gene:EMLSAG00000003477 transcript:EMLSAT00000003477 description:"maker-LSalAtl2s18-augustus-gene-2.4") HSP 1 Score: 53.1434 bits (126), Expect = 1.715e-8 Identity = 33/104 (31.73%), Postives = 58/104 (55.77%), Query Frame = 0 Query: 14 STLIARSDPNPFRI-LQSMELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQ 116 S L+ SD N I + E+L+LS L WD+ AV A D+L++++ L +L ++ +R+Q+E I LC++ F S+ PSL+A A + ++++ Sbjct: 131 SKLVEYSDFNLTLIDIMEWEVLLLSKLDWDMSAVIASDFLEHIVQRLT----------ILDVSSNLVHIRQQAEARILLCSSHYEFSSINPSLIAIACVLASLE 224
BLAST of g1 s-specific cyclin- partial vs. SwissProt
Match: gi|1345742|sp|P48961.1|CCND3_RAT (RecName: Full=G1/S-specific cyclin-D3) HSP 1 Score: 57.3806 bits (137), Expect = 2.530e-8 Identity = 45/162 (27.78%), Postives = 80/162 (49.38%), Query Frame = 0 Query: 28 LQSMELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQQDLESQPPMGP-TVNLNDVVQKLRKYTEIEMDSLRHCIDQ---------IEELFISGATPRPQSP----SSGP 175 L+ E+L+L LKWDL AV A+D+L +L L PS D + L +++ ++ + LC TD F PS++A+ ++ +A+ +G +++ +++ + L T E+D LR C +Q + E + +P P++P S GP Sbjct: 137 LREWEVLVLGKLKWDLAAVIAHDFLALILHRLSLPS----DRQAL--------VKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVLG-------LGACSMSADELTELLAGITGTEVDCLRACQEQQIEAALRESLREAAQTAPSPVPKAPGGSSSQGP 279
BLAST of g1 s-specific cyclin- partial vs. SwissProt
Match: gi|1705782|sp|P50755.1|CCND1_XENLA (RecName: Full=G1/S-specific cyclin-D1) HSP 1 Score: 56.225 bits (134), Expect = 6.065e-8 Identity = 39/131 (29.77%), Postives = 74/131 (56.49%), Query Frame = 0 Query: 31 MELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQ-QDLESQPPMGPTVNLNDVVQKLRKYTEIEMDSLRHCIDQIEELF 160 MEL +L+ LKWDL +VT +D++++ L+ + P + ++ I +R+ ++ + LC TD +F+S PS++A+ ++ +A+Q +L + + T L + ++ K + D LR C +QIE L Sbjct: 138 MELRVLNKLKWDLASVTPHDFIEHFLN--KMP--------LTEDTKQI--IRKHAQTFVALCATDVNFISNPPSMIAAGSVAAAVQGLNLGNADSVFSTQRLTLFLSQVIK---CDPDCLRACQEQIESLL 253
BLAST of g1 s-specific cyclin- partial vs. SwissProt
Match: gi|1705785|sp|P53782.1|CCND2_XENLA (RecName: Full=G1/S-specific cyclin-D2) HSP 1 Score: 55.8398 bits (133), Expect = 8.017e-8 Identity = 39/136 (28.68%), Postives = 73/136 (53.68%), Query Frame = 0 Query: 28 LQSMELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQQDLESQPPMGPT-VNLNDVVQKLRKYTEIEMDSLRHCIDQIEELFIS 162 L EL++L LKW+L AVT +D+++++L L P + +R+ ++ I LC TD +F PS++A+ ++ +A+ Q +G T ++ + + + L K T ++D L+ C +QIE + +S Sbjct: 136 LLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPLPKDKLL------------LIRKHAQTFIALCATDFNFAMYPPSMIATGSVGAAI---CGLQLDVGETSLSGDSLTEHLAKITSTDVDCLKACQEQIESVLVS 256
BLAST of g1 s-specific cyclin- partial vs. SwissProt
Match: gi|1705781|sp|P55169.1|CCND1_CHICK (RecName: Full=G1/S-specific cyclin-D1) HSP 1 Score: 54.6842 bits (130), Expect = 2.001e-7 Identity = 46/166 (27.71%), Postives = 81/166 (48.80%), Query Frame = 0 Query: 28 LQSMELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQQDLESQPPMGPT---VNLNDVVQKLRKYTEIEMDSLRHCIDQIEELFISGATPRPQSPSSGPGLHKESAMDGTTTTT 190 L MELL+++ LKW+L A+T +D++++ L + P A ++ I +R+ ++ + LC TD F+S PS++A+ ++ +A+Q +G T ++ + L + + + D LR C +QIE L S Q S E D + T T Sbjct: 137 LLQMELLLVNKLKWNLAAMTPHDFIEHFLT--KMPLA--------EDTKQI--IRKHAQTFVALCATDVKFISNPPSMIAAGSVVAAVQ-----GLHLGNTNTFLSYQCLTHFLSQVIKCDPDCLRACQEQIESLLESSLRQAQQHNVSSETKTVEDEADLSCTPT 285
BLAST of g1 s-specific cyclin- partial vs. SwissProt
Match: gi|116153|sp|P25322.1|CCND1_MOUSE (RecName: Full=G1/S-specific cyclin-D1) HSP 1 Score: 53.1434 bits (126), Expect = 6.271e-7 Identity = 36/125 (28.80%), Postives = 66/125 (52.80%), Query Frame = 0 Query: 36 LSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQQDLESQPPMGPTVNLNDVVQKLRKYTEIEMDSLRHCIDQIEELF 160 ++ LKW+L A+T +D++++ L + P A DE + +++R+ ++ + LC TD F+S PS+VA+ ++ +AMQ P ++ L + + + D LR C +QIE L Sbjct: 145 VNKLKWNLAAMTPHDFIEHFLS--KMPEA---DE-------NKQTIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAMQGLNLGSP--NNFLSCYRTTHFLSRVIKCDPDCLRACQEQIEALL 255
BLAST of g1 s-specific cyclin- partial vs. nr
Match: gi|961124557|ref|XP_014783733.1| (PREDICTED: G1/S-specific cyclin-D2-like [Octopus bimaculoides] >gi|918296259|gb|KOF72476.1| hypothetical protein OCBIM_22039413mg [Octopus bimaculoides]) HSP 1 Score: 78.9518 bits (193), Expect = 2.290e-13 Identity = 49/131 (37.40%), Postives = 71/131 (54.20%), Query Frame = 0 Query: 28 LQSMELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQQDLESQPPMGPTVNLNDVVQKLRKYTEIEMDSLRHCIDQIEE 158 L +MEL +L LKWDLMA+T D+++ +L L S I +++ + I +C TD FM+ TPS +A + +AMQ + P VN N ++QKL + T IE+D LR C DQIE+ Sbjct: 136 LLAMELHLLCVLKWDLMAITPNDFIELILRRLPIDSL------------RINIIKKHAHTFIAMCYTDCKFMTYTPSTIAVGCIGAAMQGLTNT-----PMVNFN-LLQKLHEITHIELDYLRACQDQIEQ 248
BLAST of g1 s-specific cyclin- partial vs. nr
Match: gi|1022776287|gb|KZS20005.1| (G1/S-specific cyclin-D2-like protein [Daphnia magna]) HSP 1 Score: 77.0258 bits (188), Expect = 4.167e-13 Identity = 45/141 (31.91%), Postives = 77/141 (54.61%), Query Frame = 0 Query: 27 ILQSMELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQQDLESQPPMGPT-VNLNDVVQKLRKYTEIEMDSLRHCIDQIEELFISGATP 166 + Q ELL+L+ LKWD+ ++T +D++D+L+ L +V G + RR + I LC + F PS++A A + +A++ +L+ P M T +ND++ +L+ T IE + LR C +Q++E S A P Sbjct: 38 LFQQWELLVLNRLKWDICSITPHDFVDHLMTRL----------DVSNPWGPV---RRTAHGYIALCALEYKFAMCPPSMIACACVVAAIRNELD--PTMSATDFTVNDIIAQLQTITHIETEILRGCFEQVDEFLRSLAPP 163
BLAST of g1 s-specific cyclin- partial vs. nr
Match: gi|957834144|ref|XP_014667160.1| (PREDICTED: G1/S-specific cyclin-D2-like [Priapulus caudatus]) HSP 1 Score: 77.7962 bits (190), Expect = 6.626e-13 Identity = 49/147 (33.33%), Postives = 77/147 (52.38%), Query Frame = 0 Query: 28 LQSMELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQQDLESQPPMGPTVNLNDVVQKLRKYTEIEMDSLRHCIDQIEELF---ISGATPRPQSP 171 L E+ +LS LKWDL AVTA+D+L++L+ LQ S + +RR ++ I LC TD F PS++ +A++ +A L S +N ++ +L K + +E+D LR CI+Q+EE +S P Q+P Sbjct: 151 LMDWEVYVLSRLKWDLSAVTAHDFLEHLMSRLQLTS------------DRADMVRRHAQTFIALCATDFSFAMYPPSMICAASIGAAAHGLLTSSSGTS-AAEMNALLHRLSKLSNMEVDVLRSCIEQVEETVNTSLSTVDPLEQTP 284
BLAST of g1 s-specific cyclin- partial vs. nr
Match: gi|1009531706|ref|XP_015931167.1| (G1/S-specific cyclin-D2 [Parasteatoda tepidariorum]) HSP 1 Score: 74.7146 bits (182), Expect = 8.227e-12 Identity = 54/154 (35.06%), Postives = 85/154 (55.19%), Query Frame = 0 Query: 28 LQSMELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQQDLESQPPMGPTVNLNDVVQKLRKYTEIEMDSLRHCIDQIEELFIS--GATPRPQSPSSGPGLHK 179 L + ELL+L+ LKWDL A+T +D++ ++L L+ V EEV++ H I +C TD F PS++A+A+L +A+ Q L S+ + + +++ L + T I++D LR C +QIEE +S A P + SS PG HK Sbjct: 136 LINWELLVLNTLKWDLSAITPFDFVSHILRRLRV----VQREEVIKRHAH---------TFIGICTTDVKFAMYPPSMIAAASLGAAI-QGLSSRIEQKWS-SATELLSSLNEITGIDVDCLRSCWEQIEECIVSHIAAATHPLT-SSLPGSHK 273
BLAST of g1 s-specific cyclin- partial vs. nr
Match: gi|1016696759|ref|XP_016070725.1| (PREDICTED: G1/S-specific cyclin-D2 isoform X2 [Miniopterus natalensis]) HSP 1 Score: 72.0182 bits (175), Expect = 5.996e-11 Identity = 52/166 (31.33%), Postives = 83/166 (50.00%), Query Frame = 0 Query: 28 LQSMELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSA---MQQDLESQPPMGPTVNLNDVVQKLRKYTEIEMDSLRHCIDQIEELFISGATPRPQSPSSGPGLHKESAMDGTTTTT 190 L EL++L LKW+L AVT +D+++ +L L PS V +R+ ++ I LC TD F PS++A+ ++ +A +QQD E G + +V+ L K T ++D L+ C +QIEE+ +S Q + G G E +D +T T Sbjct: 136 LLEWELVVLGKLKWNLAAVTPHDFIEPILRRLPQPSEKVS------------VVRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTG-----DALVELLAKITNTDVDCLKACQEQIEEVLLSSLQQFQQ--AQGEGSKSEDELDQASTPT 282
BLAST of g1 s-specific cyclin- partial vs. nr
Match: gi|987970898|ref|XP_015427658.1| (PREDICTED: G1/S-specific cyclin-D3 isoform X5 [Myotis davidii]) HSP 1 Score: 68.9366 bits (167), Expect = 1.160e-10 Identity = 50/164 (30.49%), Postives = 82/164 (50.00%), Query Frame = 0 Query: 29 QSMELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQQDLESQPPMGPTVNLNDVVQKLRKYTEIEMDSLRHCIDQIEELFISGATPRPQ-SPSSGPGLHKESAMDGTTTTTS 191 + E+L+L LKWDL AV A+D+L +L L PS D + L +R+ ++ + LC TD F PS++A+ ++ +A+ Q L + P + +++ + L T E+D LR C +QIE Q SPS P + S+ G + T++ Sbjct: 10 EDWEVLVLGKLKWDLAAVIAHDFLALILYRLSLPS----DRQAL--------VRKHAQTFLALCATDYTFAMYPPSMIATGSIGAAV-QGLGAWP-----ASADELTELLAGITGTEVDCLRACQEQIEAALRESLREAAQTSPSPAPKAPRGSSSQGPSQTST 155
BLAST of g1 s-specific cyclin- partial vs. nr
Match: gi|634835375|ref|XP_007934445.1| (PREDICTED: G1/S-specific cyclin-D3 isoform X2 [Orycteropus afer afer]) HSP 1 Score: 69.707 bits (169), Expect = 1.825e-10 Identity = 44/133 (33.08%), Postives = 72/133 (54.14%), Query Frame = 0 Query: 25 FRILQSMELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQQDLESQPPMGPTVNLNDVVQKLRKYTEIEMDSLRHCIDQIE 157 + +L+ ELL+L LKWDL AV A+D+L +L L PS D E L +R+ ++ + LC TD F PS++A+ ++ +A+Q S +++ +++ + L T E+D LR C +QIE Sbjct: 62 YWMLEDWELLVLGRLKWDLAAVIAHDFLSVILHRLPLPS----DREAL--------VRKHAQTFLALCATDYTFAMYPPSMIATGSVGAAVQGLSAS------SLSADELTEMLAGITGTEVDCLRACQEQIE 176
BLAST of g1 s-specific cyclin- partial vs. nr
Match: gi|1042306288|ref|XP_017349596.1| (PREDICTED: G1/S-specific cyclin-D2-like [Ictalurus punctatus]) HSP 1 Score: 70.8626 bits (172), Expect = 1.864e-10 Identity = 46/163 (28.22%), Postives = 85/163 (52.15%), Query Frame = 0 Query: 28 LQSMELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQQDLESQPPMGPTVNLND-------VVQKLRKYTEIEMDSLRHCIDQIEELFISGATPRPQSPS--SGPGLHKES 181 L + EL++L LKW+L AVT +D+++++L L P G +E +R+ ++ I LC TD F+ TPS++A+ ++ +A+ G +N + + L K T IE++ L+ C ++IE+L ++ + + Q P G ++KE+ Sbjct: 136 LLNWELMVLGKLKWNLAAVTPHDFIEHILRKLPLPE------------GRVELIRKHAQTFIALCATDHSFVMYTPSMIATGSIGAAV---------CGLQINRTESSVWGESTTELLAKITHIEVECLKSCQEKIEQL-LASSLRQSQQPKHQKGRAINKEA 276
BLAST of g1 s-specific cyclin- partial vs. nr
Match: gi|1207835770|gb|OWK13274.1| (CCND3 [Cervus elaphus hippelaphus]) HSP 1 Score: 68.5514 bits (166), Expect = 2.342e-10 Identity = 51/171 (29.82%), Postives = 81/171 (47.37%), Query Frame = 0 Query: 23 NPFRILQSMELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQQDLESQPPMGPTVNLND-VVQKLRKYTEIEMDSLRHCIDQIEELFISGATPRPQ-SPSSGPGLHKESAMDGTTTTTS 191 +P LQ E+L+L LKWDL AV A+D+L +L L P D + L +++ ++ + LC TD F PS++A+ ++ +A+Q +G D + + L T E+D LR C +QIE Q SPS P + S+ G + T++ Sbjct: 17 DPALFLQDWEVLVLGKLKWDLAAVIAHDFLALILHRLSLPR----DRQAL--------VKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQG-------LGACSTSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREAAQTSPSPAPKAPRGSSSQGPSQTST 168
BLAST of g1 s-specific cyclin- partial vs. nr
Match: gi|762096835|ref|XP_011430967.1| (PREDICTED: G1/S-specific cyclin-D2 [Crassostrea gigas] >gi|405959930|gb|EKC25904.1| G1/S-specific cyclin-D2 [Crassostrea gigas]) HSP 1 Score: 70.4774 bits (171), Expect = 2.353e-10 Identity = 46/148 (31.08%), Postives = 76/148 (51.35%), Query Frame = 0 Query: 28 LQSMELLILSHLKWDLMAVTAYDYLDYLLDVLQTPSAHVGDEEVLQEPGHIESLRRQSERLITLCNTDPHFMSVTPSLVASAALTSAMQQDLESQPPMGPTVNLNDVVQKLRKYTEIEMDSLRHCIDQIEELFISGATPRPQSPSSGP 175 L MEL +LS LKWDL AVT +D+L+ +L + T D+E +++ S+ I LC+TD F++ PS++A+ ++ +A L++ ++Q L + I++D L+ C DQIE+ S + Q S P Sbjct: 136 LTEMELFVLSKLKWDLSAVTPHDFLEQILSRICT------DQE------RCNVIKKHSQTFIALCSTDCKFINYPPSMIAAGSVGAAAHGLLKTDN--------TKLLQSLHQILNIDVDCLKSCQDQIEQTLSSNLSHMAQLSESAP 263 The following BLAST results are available for this feature:
BLAST of g1 s-specific cyclin- partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 2
BLAST of g1 s-specific cyclin- partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 15
Pagesback to top
BLAST of g1 s-specific cyclin- partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold96_size378025:172297..173206- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold96_size378025-snap-gene-1.20 ID=maker-scaffold96_size378025-snap-gene-1.20|Name=g1 s-specific cyclin- partial|organism=Tigriopus kingsejongensis|type=gene|length=910bp|location=Sequence derived from alignment at scaffold96_size378025:172297..173206- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'g1 s-specific cyclin- partial' has the following synonyms
Add to Basket
|