Ca, maker-scaffold987_size73085-snap-gene-0.6 (gene) Tigriopus kingsejongensis

Overview
NameCa
Unique Namemaker-scaffold987_size73085-snap-gene-0.6
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of Ca vs. L. salmonis genes
Match: EMLSAG00000012432 (supercontig:LSalAtl2s:LSalAtl2s910:17613:93877:-1 gene:EMLSAG00000012432 transcript:EMLSAT00000012432 description:"maker-LSalAtl2s910-snap-gene-0.10")

HSP 1 Score: 62.7734 bits (151), Expect = 3.306e-12
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 0 
Query:   89 LSTFKPPQGSPMLLKVPGPPNNHAHHHHRTSSGVDLGSHRSSGDGGSEIDTESDAPYATLKIMAEMETEEEEESHYSLIRQPDGRADDPAYSPL 182
            +STF+P Q SP  L +    + H HH    S G      RS+GDGGS +D   +A YATL +   +   + E SHY+LIR+PDGRAD+P YS L
Sbjct:  478 MSTFRPHQNSP--LPILPSSSQHLHHSRDVSGGSSSIGGRSAGDGGSVVD---EANYATL-LQENIADNDNESSHYTLIRKPDGRADEPNYSTL 565
The following BLAST results are available for this feature:
BLAST of Ca vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000124323.306e-1245.74supercontig:LSalAtl2s:LSalAtl2s910:17613:93877:-1 ... [more]
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BLAST of Ca vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ca vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold987_size73085supercontigscaffold987_size73085:5959..8061 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:voltage-gated calcium channel activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold987_size73085-snap-gene-0.6-mRNA-1maker-scaffold987_size73085-snap-gene-0.6-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold987_size73085:5959..8061-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold987_size73085-snap-gene-0.6 ID=maker-scaffold987_size73085-snap-gene-0.6|Name=Ca|organism=Tigriopus kingsejongensis|type=gene|length=2103bp|location=Sequence derived from alignment at scaffold987_size73085:5959..8061- (Tigriopus kingsejongensis)
GATTTGGCGACCACCACCCACACTTGTACAGAGAGAAGGAGAGTGGGATG
ATGTTCAACACCATTGACACACGACCTTCGGCTTCGAGGAGAGGTCGCGA
GGCCGCGGCCTCCGACCTCAAGAGTCAATTCGATACCTTTCCCAGGCATC
ATCAGCATTCCAGCTTGAGTACAGGCTCTCCCCTGATGGCCCATCCTCCC
TCAATGACCTCACGTGGAGGCAATGAGGCCGCTGCCACCAAGACCTCAAT
TGGAAATGGGGTCTCCGCTCATCAATTGCAACAACAGTTATCCACTTTCA
AGCCGCCTCAGGTAGGCACACGAGCGAGAGCTCACGTCTCCAAACTGCCA
ATTGGCCCAATGTCCCCCAAAGTGGCCTCCGAAAGTAGCCTTTTTAGGCC
TCTAAAAGACCGACCACGATGGGTCAATTGATTTTTGGTCCCAATAGCTT
GAAATGGAGCACCCTCATTTATCAACCCAGGTAACAGATCGGTCCTCAAT
CAACCATTCAGAGCCGAACAGGACTTGTCAGAGCTTTCAAAGAACTACCA
GAAGCAGTGACATTACAGTATTTGCTAGGCCATGTTATTAAATTTGGTCC
ACAAATGTCTTCCAGCCCGCCATGGACTCAATGACACATTGTACTATGTA
CATGTTTCGAGCTCTGGATGTACGAGTTTGATCACCTTAATTAAGCTAAT
AGGTACAGTCCGGTACAATAATAATCGGTACGGTAAATATATACTAGCGA
AAGCTGAAGCAGGAAGGTTGCGAGAGCCAGTTCAATTATTTGCGCAAAAT
CTAACCAAAGTTCAGTTGGATTGCTTTCGGAAAGGAAGGTGTACCCCCGA
TTTGGTACTTTTTGAACTGCATATTATTCATGTCTACATTGCATTGTGCC
TTTAATTGTTGTGATAACAATTTCGTTTTTCTTCAGTTTCATAGCCTGAA
ATGTTTTTGATGAGACTCTCCCGTGAGTCATTTCAGGGTGGCCAAAATGT
ACACTTAAACTTGCCGGGCAGATACGTAATAGGGGCATCCAGAAGGCATA
TTTGTACGTTTAGAGTGCTGTTATTTCAATATTCACTCAAAGATTGGCAG
TGCTCTCATCCCAATATATAGTTCGTAATTAAGGCGATGCGGCTCAAACG
GGTTCAGTTAGTCAGTTTGAAATTGGGCCGAGAAATGGGAGAAATTCACC
CTTTGTTCGATATTCACGAGGGCGTGTTGATCGGATCAGAGACGACCTTG
AGCATATTTTGGAAGACGGAAAGCGATTCCACGGGGGATTTGAGATCGTA
GGAACCATCACAAAGGTATTCCGCCTTTCCTAGGGAGGTGAACGCGATGC
AATCATCTTTGGAAGGGAAATGTGATCCCTATTTGTTCAGTGTTCCATAA
CAAAATGGAACATGAACACCAGGGGGAGGCTCCTGAAGGAGAGTGGATCC
AATAGGTTGAGACGACGACCTTGTTGTGCGCTTCTTCTGGAGCTGAGTAT
ATGGAAATCATATGCCGGACTATCCAGGTTCCCTCCTCAAGAAGAAGGGT
CAAAGTAGGATTAGAGGATTAGACAAATCCCGAGCCCATCGCCTCTGATA
GTGGGACCAGGCTGGGAGCATTATTCCCACTTTGAGTATGATTCCCAACG
ATAGACCCACTTTTTTGCTCAGTGGCTAGAGGGTTGGCGAGAAGACTTCT
TTTGATCCCCTCTCTTCTCATGGAAATTCAATTTTGACAAGCAGGCTGAA
ATGTGATCTGCCACTTCAAAGCTAGAAAAGTGTGAGAAGCTCTTGGGGAA
CACGCGGAACCGTGCCAGCTAGCTCTACCTTCAACTCCATTCTAGGGCTC
TCCCATGCTGCTCAAGGTGCCAGGCCCGCCCAATAACCACGCCCACCACC
ACCATCGAACCTCGTCGGGCGTGGATTTGGGCAGTCACAGATCCTCCGGC
GACGGGGGATCGGAAATTGACACCGAGTCCGACGCTCCCTACGCCACCCT
CAAGATCATGGCCGAAATGGAGACCGAGGAGGAGGAAGAGTCCCATTACT
CACTCATCCGACAACCCGACGGAAGGGCCGATGATCCCGCGTACTCACCT
CTG
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Synonyms
The feature 'Ca' has the following synonyms
Synonym
Tk07687
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