28s ribosomal protein mitochondrial, snap_masked-scaffold104_size368486-processed-gene-2.3 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 28s ribosomal protein mitochondrial vs. SwissProt
Match: gi|31077184|sp|Q9Y3D9.2|RT23_HUMAN (RecName: Full=28S ribosomal protein S23, mitochondrial; Short=MRP-S23; Short=S23mt; AltName: Full=Mitochondrial small ribosomal subunit protein mS23) HSP 1 Score: 94.7449 bits (234), Expect = 1.636e-23 Identity = 60/167 (35.93%), Postives = 89/167 (53.29%), Query Frame = 0 Query: 1 MAQSRLEKVGTIYSRMRALLNTGAVKEEHTPLWYPLYEAFPPQHEPRWD----RVPQRDTPIPRILYREDMVRAQFYRQFGDHHEVMNLLDQASPPPLSQVFLDKYRQIQAEAPPETDFKGLFVRTVDALELDGVRLRAMDREAALKMSSEMMEERDETSPKPRRTM 163 MA SRLE VG+I+SR R L+ G +KE+ PLW+ +Y+AFPP EP + R + PI I Y ED +RA+FY +G +L + + Q F++KY ++Q ETD + LFV T AL +GV LR + S + + + S +P+ + Sbjct: 1 MAGSRLETVGSIFSRTRDLVRAGVLKEK--PLWFDVYDAFPPLREPVFQRPRVRYGKAKAPIQDIWYHEDRIRAKFYSVYGSGQRAFDLFN-PNFKSTCQRFVEKYTELQKLG--ETDEEKLFVETGKALLAEGVILRRVGEARTQHGGSHVSRKSEHLSVRPQTAL 162
BLAST of 28s ribosomal protein mitochondrial vs. SwissProt
Match: gi|31076981|sp|Q8VE22.1|RT23_MOUSE (RecName: Full=28S ribosomal protein S23, mitochondrial; Short=MRP-S23; Short=S23mt) HSP 1 Score: 92.0485 bits (227), Expect = 1.443e-22 Identity = 62/159 (38.99%), Postives = 90/159 (56.60%), Query Frame = 0 Query: 1 MAQSRLEKVGTIYSRMRALLNTGAVKEEHTPLWYPLYEAFPPQHEPRWD----RVPQRDTPIPRILYREDMVRAQFYRQFGDHHEVMNLLDQASPPPLSQVFLDKYRQIQAEAPPETDFKGLFVRTVDALELDGVRLRAMDREA-----ALKMSSEMME 150 MA SRLE VG+++SR R L+ G +KE+ PLWY +Y+AFPP EP + R + I I Y+ED +RA+F+ +G + +L + + Q F++KY ++Q ETD + LFV T AL +G+ LR + REA L+ SSE E Sbjct: 1 MAGSRLETVGSVFSRTRDLMRAGVLKEK--PLWYDIYKAFPPLREPVFRRPRLRYGKAKADIQDIFYQEDQIRAKFFATYGSGQKAFDLFN-PNFKSTCQRFVEKYTELQNLG--ETDEEKLFVETGKALLAEGIILRRV-REARTVSVRLQASSEGHE 153
BLAST of 28s ribosomal protein mitochondrial vs. SwissProt
Match: gi|122136506|sp|Q2NL27.1|RT23_BOVIN (RecName: Full=28S ribosomal protein S23, mitochondrial; Short=MRP-S23; Short=S23mt) HSP 1 Score: 89.3521 bits (220), Expect = 1.854e-21 Identity = 54/142 (38.03%), Postives = 81/142 (57.04%), Query Frame = 0 Query: 1 MAQSRLEKVGTIYSRMRALLNTGAVKEEHTPLWYPLYEAFPPQHEPRWD----RVPQRDTPIPRILYREDMVRAQFYRQFGDHHEVMNLLDQASPPPLSQVFLDKYRQIQAEAPPETDFKGLFVRTVDALELDGVRLRAMDR 138 MA SRLE VG+I++R R L+ G +KE+ PLW+ +Y AFPP EP + R + +P I Y ED +RA+FY +G + +L + + Q F++KY ++Q ETD + LFV AL +GV LR +++ Sbjct: 1 MAGSRLETVGSIFTRTRDLIRAGVLKEK--PLWFDVYNAFPPLREPVFRRPRLRYGKAKSPTQDIYYHEDQIRAKFYAAYGSGPKAFDLFN-PNFKSTCQRFVEKYIELQKLG--ETDEEKLFVEAGKALLAEGVILRRVEK 137
BLAST of 28s ribosomal protein mitochondrial vs. SwissProt
Match: gi|466062|sp|P34748.1|RT23_CAEEL (RecName: Full=Probable 28S ribosomal protein S23, mitochondrial) HSP 1 Score: 75.8702 bits (185), Expect = 9.033e-17 Identity = 42/132 (31.82%), Postives = 72/132 (54.55%), Query Frame = 0 Query: 4 SRLEKVGTIYSRMRALLNTGAVKEEHTPLWYPLYEAFPPQHEPRWD-RVPQRDTPIPRILYREDMVRAQFYRQFGDHHEVMNLLDQASPPPLSQVFLDKYRQIQAEAPPETDFKGLFVRTVDALELDGVRLR 134 +R E+ G I+SR+ L+ G + PLWY +Y + PP P W+ ++ + D PI I Y ED++RA+FY+ + + +S +SQ F+++Y+ +++E TD LF T L +G+ L+ Sbjct: 6 TRAERSGNIFSRVTGLIRAGQLNWADRPLWYDVYVSSPPLTPPDWNVKLAKYDEPIRSIFYEEDVLRAKFYKTY---RSTAGIQVDSSRTSVSQQFINEYKLVKSENAEATD-DQLFEMTQKRLNENGIVLK 133
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|961376366|gb|ALS04927.1| (mitochondrial 28S ribosomal protein S23 [Pseudodiaptomus poplesia]) HSP 1 Score: 147.517 bits (371), Expect = 8.596e-42 Identity = 82/180 (45.56%), Postives = 119/180 (66.11%), Query Frame = 0 Query: 1 MAQSRLEKVGTIYSRMRALLNTGAVKEEHTPLWYPLYEAFPPQHEPRWDRVPQRDTPIPRILYREDMVRAQFYRQFGDHHEVMNLLDQASPPPLSQVFLDKYRQIQAEAPPETDFKGLFVRTVDALELDGVRLRAMDREAALKMSSEMMEERDETSPKPRRTMGKPSFRELFGQQSEKRT 180 MAQSRLEK+GT+YSR+R LL T A++ E TPLWY +YEAFPP++EPRWDR P D P+P+ILY+ED++RA+FY +FG E +NLL P SQVF++KY ++ E + + ++ +T+ ALEL+GV L SSE + D KP+ + SF+ELF ++++ ++ Sbjct: 1 MAQSRLEKIGTVYSRIRGLLETKALRAEQTPLWYDVYEAFPPKYEPRWDRKPNTD-PLPKILYQEDVIRAKFYHKFG-CQETLNLLQAHEQPLTSQVFINKYLELLNEG---HEPQSVWDKTIQALELEGVDLYGTKSSLDTSSSSESATDSDR---KPK--LSSISFQELFAKENDNKS 170
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|1325270217|ref|XP_023319686.1| (probable 28S ribosomal protein S23, mitochondrial [Eurytemora affinis]) HSP 1 Score: 136.346 bits (342), Expect = 1.468e-37 Identity = 80/180 (44.44%), Postives = 113/180 (62.78%), Query Frame = 0 Query: 1 MAQSRLEKVGTIYSRMRALLNTGAVKEEHTPLWYPLYEAFPPQHEPRWDRVPQRDTPIPRILYREDMVRAQFYRQFGDHHEVMNLLDQASPPPLSQVFLDKYRQIQAEAPPETDFKGLFVRTVDALELDGVRLRAMDREAALKMSSEMMEERDE-TSPK-PRRTMGKPSFRELFGQQSEK 178 MAQSRLEK+GTI+S++R +GA++ E PLWY +YEAFPP++EPRWDR P + PI +ILY+ED++RA++Y+ FG+ EV+NL Q SQ F++KY ++ E P L+ RTV ALEL D+EA + E DE T+PK P + SF++LF ++ K Sbjct: 1 MAQSRLEKIGTIFSKIRGFQASGAIQPEQVPLWYNIYEAFPPKYEPRWDRKPT-NNPIKKILYKEDVIRAKYYQTFGN-KEVVNL--QVDGNLASQTFINKYLSLEQEGHPAD---SLWERTVQALEL--------DKEATI--------ENDELTTPKRPEKI----SFKDLFNEKDNK 153
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|290562261|gb|ADD38527.1| (28S ribosomal protein S23, mitochondrial [Lepeophtheirus salmonis]) HSP 1 Score: 127.872 bits (320), Expect = 3.578e-34 Identity = 68/138 (49.28%), Postives = 92/138 (66.67%), Query Frame = 0 Query: 1 MAQSRLEKVGTIYSRMRALLNTGAVKEEHTPLWYPLYEAFPPQHEPRWDRVP--QRDTPIPRILYREDMVRAQFYRQFGDH-HEVMNLLDQASPPPLSQVFLDKYRQIQAEAPPETDFKGLFVRTVDALELD-GVRLR 134 MAQSRLEK+GTIYSR +LLN+GAVK H P+WY +YEAFPP++EPRWDR P +D ++LY ED++RA+FY F ++ HE +NL D S +SQ+F++ Y + D K F+ VD LEL+ + LR Sbjct: 1 MAQSRLEKIGTIYSRTSSLLNSGAVK--HKPIWYDVYEAFPPKYEPRWDRSPPLSKDNSKRKVLYEEDIIRARFYDHFQENIHETINLHDPES-KCISQLFIEAYNATCV----DIDDKSRFLAAVDTLELEKNINLR 131
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|936699767|ref|XP_014227857.1| (probable 28S ribosomal protein S23, mitochondrial [Trichogramma pretiosum]) HSP 1 Score: 119.013 bits (297), Expect = 2.098e-30 Identity = 69/140 (49.29%), Postives = 94/140 (67.14%), Query Frame = 0 Query: 1 MAQSRLEKVGTIYSRMRALLNTGAVKEEHTPLWYPLYEAFPPQHEPRWDRVPQRDTPIPRILYREDMVRAQFYRQFGDHHEVMNLLDQASPPPLSQVFLDKYRQIQAEAPPETD-FKGLFVRTVDALELDGVRLRAMDRE 139 MAQSRLEK+GTIYSR+ ALL TGA+KEE+ PLWY +Y+AFPP++EPR+DR P DTP+ +I Y ED+VRA+F+R+ V N++D P + Q FL+ Y Q++ + E + F+ F L+LD RAM E Sbjct: 1 MAQSRLEKIGTIYSRVTALLKTGAMKEENKPLWYEIYKAFPPKYEPRFDR-PAPDTPVRKIFYPEDVVRARFHREHRALAAV-NMIDPNVPSRMEQ-FLNIYNQLKEKRVDENELFEKAFEEFSTKLKLD----RAMATE 133
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|225717966|gb|ACO14829.1| (Mitochondrial ribosomal protein S23 [Caligus clemensi]) HSP 1 Score: 117.472 bits (293), Expect = 4.829e-30 Identity = 75/188 (39.89%), Postives = 107/188 (56.91%), Query Frame = 0 Query: 1 MAQSRLEKVGTIYSRMRALLNTGAVKEEHTPLWYPLYEAFPPQHEPRWDRVPQRDTPIPR------ILYREDMVRAQFYRQFGDH-HEVMNLLDQASPPPLSQVFLDKYRQIQAEAPPETDFKGLFVRTVDALELD-GVRLRAMDREAALKMSSEMMEERDETSPKPRRTMGKPSFRELFGQQSEKRT 180 MAQSRLEKVG++YSRM +LL +GAVK PLW+ +YEAFPP++EPR DR PI + ++Y ED +RA FY+ F D E MNLL+ + LSQ F++ Y+ P + K F+ VD +EL+ G+ LR +EA + ++ P+ R + S +ELF Q K++ Sbjct: 1 MAQSRLEKVGSVYSRMSSLLQSGAVK--IKPLWFDVYEAFPPKYEPRCDRF----LPIEKPNWEREVIYEEDAIRAMFYKHFQDSLQETMNLLNPEA-KSLSQAFIEAYKS----TPEDIGEKARFLAAVDKIELEKGINLRQKTQEAVV----------EDIGPEKSRQI---SMKELFLQNQAKQS 164
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|225710030|gb|ACO10861.1| (Mitochondrial ribosomal protein S23 [Caligus rogercresseyi]) HSP 1 Score: 114.005 bits (284), Expect = 1.123e-28 Identity = 77/187 (41.18%), Postives = 111/187 (59.36%), Query Frame = 0 Query: 1 MAQSRLEKVGTIYSRMRALLNTGAVKEEHTPLWYPLYEAFPPQHEPRWDRVP-QRDTPIP----RILYREDMVRAQFYRQFGDH-HEVMNLLDQASPPPLSQVFLDKYRQIQAEAPPETDFKGLFVRTVDALELD-GVRLRAMDREAALKMSSEMMEERDETSPKPRRTMGKPSFRELFGQQSEKRT 180 MAQSRLEKVGTIYSRM AL+ +GA ++ PLW +YE+FPP++EPRWDR P + + + +ILY ED++RA+FY+ F + HE NL D +S+ F++ Y+ P + D K F+ +DALEL G+ L RE + ++ S EE++E P + S +ELF Q +R Sbjct: 1 MAQSRLEKVGTIYSRMSALIQSGARTDK--PLWLDIYESFPPKYEPRWDRKPLTKSSGVENWDRKILYAEDIIRAKFYKHFQNTLHETQNLRD-PDFKSISEHFIEAYQS----TPMDLDDKSRFLAALDALELQKGINL----REPSSRIESS--EEQNEKKP-------QISMKELFLQNQAERN 167
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|1321303254|ref|XP_023293545.1| (probable 28S ribosomal protein S23, mitochondrial [Lucilia cuprina]) HSP 1 Score: 113.235 bits (282), Expect = 5.003e-28 Identity = 68/185 (36.76%), Postives = 110/185 (59.46%), Query Frame = 0 Query: 1 MAQSRLEKVGTIYSRMRALLNTGAVKEEHTPLWYPLYEAFPPQHEPRWDRVPQRDTPIPRILYREDMVRAQFYRQFGDHHEVMNLLDQASPPPLSQVFLDKYRQIQAEAPPETDFKGLFVRTVDALELDGVRLRAMDREAALKMSSEMMEERDETSPKPRRTMGKPSFRELFGQQSEKRTPSSEE 185 MAQSRLEK+GTI++R+ LL +GA+K E P+WY LYEAFPP+ EPR+DR P +D PI I Y ED+ RA+F++ E++NL D+ SQ F+ Y+ ++++ D + +F +V+ L+ + +++A +E L+ S+E +E+ KPS E F + + + +S + Sbjct: 1 MAQSRLEKIGTIFTRVTGLLRSGAMKPEDKPIWYDLYEAFPPKLEPRFDR-PAKDLPIRNIFYEEDVARAKFHKTM-KQQEMINLFDRKRETQ-SQQFIKIYQGLKSQGA--LDEEKIFETSVELLQQERQQMKADSQEPLLE-SAESLED------------SKPSLTEAFNEAKQAKEATSNQ 167
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|669304185|gb|KFD47767.1| (hypothetical protein M513_11379 [Trichuris suis] >gi|669327283|gb|KFD67486.1| hypothetical protein M514_11379 [Trichuris suis] >gi|730372874|gb|KHJ44231.1| hypothetical protein D918_05583 [Trichuris suis]) HSP 1 Score: 108.612 bits (270), Expect = 5.828e-27 Identity = 52/134 (38.81%), Postives = 84/134 (62.69%), Query Frame = 0 Query: 1 MAQSRLEKVGTIYSRMRALLNTGAVKEEHTPLWYPLYEAFPPQHEPRWDRVPQRDTPIPRILYREDMVRAQFYRQFGDHHEVMNLLDQASPPPLSQVFLDKYRQIQAEAPPETDFKGLFVRTVDALELDGVRLR 134 M +SR+EKVG+I+SR+ L+ +GA+K P+WY +Y AFPP++EPR+DR I Y ED VR +F+++FG+ + L DQ S +S+ F+ K+ ++ + +++ +F TVDAL +GV L+ Sbjct: 1 MCESRVEKVGSIFSRLNGLIKSGAMKHADRPIWYDVYAAFPPKYEPRYDRPAALAPNFREIFYPEDFVRGRFFKEFGNIGRINLLTDQGS--SVSEKFVAKFFELCSGRDKIQNYEQVFADTVDALSSEGVVLK 132
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|1059398214|ref|XP_017772039.1| (PREDICTED: probable 28S ribosomal protein S23, mitochondrial [Nicrophorus vespilloides]) HSP 1 Score: 109.383 bits (272), Expect = 5.839e-27 Identity = 62/156 (39.74%), Postives = 91/156 (58.33%), Query Frame = 0 Query: 1 MAQSRLEKVGTIYSRMRALLNTGAVKEEHTPLWYPLYEAFPPQHEPRWDRVPQRDTPIPRILYREDMVRAQFYRQFGDHHEVMNLLDQASPPPLSQVFLDKYRQIQAEAPPETDFKGLFVRTVDAL----ELDGVRLRAMDREAALKMSSEMMEER 152 MA SRLEK+GTIY+R R LL +GA+ PLWY +YEAFPP+ EPR+DR P + + ILY ED++RA+ + F V NL + + L+Q F+D Y ++ A+ E D + LF T+D L EL + + D A + +++ E + Sbjct: 1 MASSRLEKIGTIYTRTRGLLQSGAMSWNDRPLWYDIYEAFPPKEEPRYDR-PAPNMQVKEILYEEDIIRAKVHSHFKSVGTV-NLRNNQT-QTLTQKFIDCYNKLGAQYGNEADSQILFDETLDILKKERELKAIEA-SEDSSAGVNITTNFTEAK 152
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|669214789|emb|CDW61146.1| (MRP-S23 domain containing protein [Trichuris trichiura]) HSP 1 Score: 108.612 bits (270), Expect = 6.929e-27 Identity = 52/136 (38.24%), Postives = 84/136 (61.76%), Query Frame = 0 Query: 1 MAQSRLEKVGTIYSRMRALLNTGAVKEEHTPLWYPLYEAFPPQHEPRWDRVPQRDTPIPRILYREDMVRAQFYRQFGDHHEVMNLLDQASPPPLSQVFLDKYRQIQAEAPPETDFKGLFVRTVDALELDGVRLRAM 136 M +SR+EKVG+I+SR+ L+ +GA+K P+WY +Y AFPP++EP +DR I Y ED VR +F+++FG+ + L DQ S LS+ F+ K+ ++ + +++ +F TVDAL +GV L+ + Sbjct: 1 MCESRVEKVGSIFSRLNGLIKSGAMKHADRPVWYDVYAAFPPKYEPHYDRPAALAPNFREIFYPEDFVRGRFFKEFGNIGRINLLTDQGS--SLSEKFVAKFFELCPDREKSHNYEQVFANTVDALSSEGVVLKKV 134 The following BLAST results are available for this feature:
BLAST of 28s ribosomal protein mitochondrial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 0
BLAST of 28s ribosomal protein mitochondrial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 4
BLAST of 28s ribosomal protein mitochondrial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold104_size368486:205303..205860+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold104_size368486-processed-gene-2.3 ID=snap_masked-scaffold104_size368486-processed-gene-2.3|Name=28s ribosomal protein mitochondrial|organism=Tigriopus kingsejongensis|type=gene|length=558bp|location=Sequence derived from alignment at scaffold104_size368486:205303..205860+ (Tigriopus kingsejongensis)back to top Synonyms
The feature '28s ribosomal protein mitochondrial' has the following synonyms
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