rho-related gtp-binding protein, snap_masked-scaffold1063_size65393-processed-gene-0.9 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of rho-related gtp-binding protein vs. L. salmonis genes
Match: EMLSAG00000012355 (supercontig:LSalAtl2s:LSalAtl2s903:193189:193806:1 gene:EMLSAG00000012355 transcript:EMLSAT00000012355 description:"augustus_masked-LSalAtl2s903-processed-gene-1.2") HSP 1 Score: 258.455 bits (659), Expect = 4.731e-88 Identity = 120/182 (65.93%), Postives = 147/182 (80.77%), Query Frame = 0 Query: 35 PPLRKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGL 216 P ++IKCV LGDGAVGKTSLI++YTT+GY EYVPTAIDTYD +V VDG P+T EMCDTPGQ+DFD LRPL YP+TDVF+LCFSVV P+SF NI+EKW+PELK+ + R PV+L+GTQSDLRE+ T+ EL R APV+E A+K+A +G + Y+ESSALTQKNLKE+FD AI G+ Sbjct: 7 PDSKRIKCVFLGDGAVGKTSLIVAYTTDGYTSEYVPTAIDTYDVVVRVDGVPLTFEMCDTPGQEDFDDLRPLVYPNTDVFILCFSVVSPTSFKNIKEKWIPELKKRSS--RKTPVLLVGTQSDLREDVNTLLELNRNYEAPVTENEAKKMASALGCKGYVESSALTQKNLKEIFDEAITLGI 186
BLAST of rho-related gtp-binding protein vs. L. salmonis genes
Match: EMLSAG00000006917 (supercontig:LSalAtl2s:LSalAtl2s391:521398:525466:1 gene:EMLSAG00000006917 transcript:EMLSAT00000006917 description:"maker-LSalAtl2s391-augustus-gene-5.30") HSP 1 Score: 195.282 bits (495), Expect = 2.793e-63 Identity = 101/200 (50.50%), Postives = 129/200 (64.50%), Query Frame = 0 Query: 38 RKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGLGGQRRQERRAAQKQRRREKRC 237 R IKCV++GDG VGKT ++ISYTT+ +P EYVPT D Y A + DG PV+L + DT GQ+D D LRPL+YP TDVFL+ FSVV PSSF N+ KW PE+K A P++L+GT+ DLRE+ T+ LA AP+ QKL I +YLE SALTQ+ LK+VFD A+ + L Q RRR+K+C Sbjct: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVCDGVPVSLGLWDTAGQEDXDRLRPLSYPQTDVFLITFSVVSPSSFENVTSKWCPEIKHHCADA---PILLVGTKIDLREDKETLQALADAGQAPIKREQGQKLCNKIRAVKYLECSALTQRGLKQVFDEAVRSVL---------RPQPVRRRQKKC 192
BLAST of rho-related gtp-binding protein vs. L. salmonis genes
Match: EMLSAG00000000691 (supercontig:LSalAtl2s:LSalAtl2s110:223932:225715:1 gene:EMLSAG00000000691 transcript:EMLSAT00000000691 description:"maker-LSalAtl2s110-augustus-gene-2.2") HSP 1 Score: 192.586 bits (488), Expect = 4.843e-62 Identity = 90/179 (50.28%), Postives = 124/179 (69.27%), Query Frame = 0 Query: 38 RKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGL 216 + IKCV++GDGAVGKT ++ISY T+ +PQEYVPT D Y V + +P TL + DT GQ+D+D LR L YP+TD+FL+CFSV+ P+SF N+R+KW E+K+ + P++L+GTQ DLR + T L++ K P++E + LA IG RY E SA+TQ LK+VFD AI+A L Sbjct: 7 KTIKCVVVGDGAVGKTCMLISYATDKFPQEYVPTVFDNYMVNVMIGDDPYTLGLFDTAGQEDYDNLRHLCYPNTDIFLVCFSVIRPNSFANVRQKWSSEVKKYYK----APILLVGTQVDLRNDEKTKEALSKCKQKPITEEQGRSLAKEIGAVRYSECSAITQNGLKDVFDEAIIAVL 181
BLAST of rho-related gtp-binding protein vs. L. salmonis genes
Match: EMLSAG00000000880 (supercontig:LSalAtl2s:LSalAtl2s1152:93052:93616:-1 gene:EMLSAG00000000880 transcript:EMLSAT00000000880 description:"maker-LSalAtl2s1152-augustus-gene-0.18") HSP 1 Score: 185.267 bits (469), Expect = 1.104e-59 Identity = 89/165 (53.94%), Postives = 115/165 (69.70%), Query Frame = 0 Query: 37 LRKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQ 201 ++ IKCV++GDGAVGKT L+ISYTTN +P EYVPT D Y V + GEP TL + DT GQ+D+D LRPL+YP TDVFL+C+SVV PSS+ N+REKWVPE+ H Q P + +G Q LR+ A T+ +L + K P+S +KLA + RY+E SALTQ Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCYSVVSPSSYENVREKWVPEISH-HCQ--RTPFLXVGXQIXLRDEAATIEKLTKNKQKPLSMEVGEKLAKELKAVRYVECSALTQ 162
BLAST of rho-related gtp-binding protein vs. L. salmonis genes
Match: EMLSAG00000001745 (supercontig:LSalAtl2s:LSalAtl2s12:127607:129096:-1 gene:EMLSAG00000001745 transcript:EMLSAT00000001745 description:"maker-LSalAtl2s12-snap-gene-1.31") HSP 1 Score: 135.961 bits (341), Expect = 9.763e-40 Identity = 70/164 (42.68%), Postives = 99/164 (60.37%), Query Frame = 0 Query: 41 KCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNL 204 K V++GDGA GKT L+I ++ + +P+ YVPT + Y A + V+ L + DT GQ+D+D LRPL+YP TDV L+CFS+ P S NI EKW PE+K P+IL+G + DLR + T+ EL + K PV + +A I YLE SA +++ L Sbjct: 64 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVE-----LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV---PIILVGNKKDLRNDPNTIKELGKMKQEPVKPEDGRTMAEKINAFAYLECSAKSKEGL 219
BLAST of rho-related gtp-binding protein vs. L. salmonis genes
Match: EMLSAG00000002241 (supercontig:LSalAtl2s:LSalAtl2s1425:37157:38278:-1 gene:EMLSAG00000002241 transcript:EMLSAT00000002241 description:"maker-LSalAtl2s1425-augustus-gene-0.6") HSP 1 Score: 131.724 bits (330), Expect = 2.889e-38 Identity = 67/175 (38.29%), Postives = 104/175 (59.43%), Query Frame = 0 Query: 38 RKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAI 212 + IK V++GDGA GKTSL++SY N +P+ + PT D + + L + DT GQ+D+D LRPLAY H DVFLLCF++ +S N + KW PEL + H+ PV+LIG ++DLR+++ + +S+ +A I +YLE S+L ++ + VF++A+ Sbjct: 9 KDIKLVVVGDGAXGKTSLLVSYARNHFPESHDPTVFDCITTSLQRHNIKIKLNLWDTAGQEDYDRLRPLAYHHADVFLLCFALNSNASLYNAKAKWAPELNK-HSNA---PVLLIGLKADLRKDSNS-----------ISKREGSDIARSIKTVKYLECSSLKREGVTTVFESAV 168
BLAST of rho-related gtp-binding protein vs. L. salmonis genes
Match: EMLSAG00000000863 (supercontig:LSalAtl2s:LSalAtl2s1149:7505:31613:1 gene:EMLSAG00000000863 transcript:EMLSAT00000000863 description:"maker-LSalAtl2s1149-augustus-gene-0.4") HSP 1 Score: 118.627 bits (296), Expect = 9.012e-32 Identity = 66/199 (33.17%), Postives = 102/199 (51.26%), Query Frame = 0 Query: 38 RKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAG--LGGQRRQERRAAQKQRRRE 234 R I VL+GD +GK++LI T N + QEY PT+ D V+G+ + + DT G +D +R L Y VFLLCF + P+S ++R KW+ EL+R + P+IL G Q+DLR + T+A L++ +PV+ A + I Y+E+S+ + EVF+ A L R + + +R Sbjct: 10 RSITVVLVGDTKIGKSALINRITKNAFSQEYTPTSFDKVAVKRNVEGKWLEFALWDTSGCSAYDNVRSLPYEEAHVFLLCFKISDPASLSSVRHKWMKELRRHRPEV---PIILCGCQADLRHDPPTIASLSKMGRSPVAPEQALAVCCEIDAVSYVETSSKEGDSFYEVFEVCAHAAPPLSTTENTHRNNSSLKNKRN 205
BLAST of rho-related gtp-binding protein vs. L. salmonis genes
Match: EMLSAG00000007171 (supercontig:LSalAtl2s:LSalAtl2s403:51534:52749:-1 gene:EMLSAG00000007171 transcript:EMLSAT00000007171 description:"maker-LSalAtl2s403-augustus-gene-0.3") HSP 1 Score: 93.2041 bits (230), Expect = 1.977e-22 Identity = 57/180 (31.67%), Postives = 90/180 (50.00%), Query Frame = 0 Query: 39 KIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSA-LTQKNLKEVFDAAILAGLG 217 +++ L+GD VGKT+L+ Y + Y T+ + + TV + + DT G ++ R LA + DVFLLC+ + ++ + W PE++ P+IL+G QSDLR + ++ LARQ APVS A L I Y+E++A + + F+ A LA LG Sbjct: 14 EVRVTLVGDSRVGKTALLQRYIHKKFVDGYKSTSFEKCSSSSTVSSRRIKFTIWDTAGSHSPNSSRSLAIRNADVFLLCYKISDSNTLFSAINHWTPEIRAVST----APIILVGCQSDLRSDRDVLSSLARQGRAPVSSDQALTLGQQIACRMYVETTAKHSFTSASSAFEVAALASLG 189
BLAST of rho-related gtp-binding protein vs. L. salmonis genes
Match: EMLSAG00000012715 (supercontig:LSalAtl2s:LSalAtl2s965:433029:434186:-1 gene:EMLSAG00000012715 transcript:EMLSAT00000012715 description:"maker-LSalAtl2s965-snap-gene-3.54") HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-21 Identity = 49/162 (30.25%), Postives = 84/162 (51.85%), Query Frame = 0 Query: 37 LRKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSA 198 +++ K V++GDGA GKTSL+ + T +P+ Q+ +D LR L YP DV ++CF++ P + N+R++W+PE+ R H +G P++L+G + DLR++ ++ L + + APV A + +A I + E SA Sbjct: 7 VKRYKLVVVGDGACGKTSLLTVFKTGIFPK-----------------------------SQEFYDRLRILTYP-ADVIIICFAIDRPETLANVRKRWIPEV-RQHCKG--VPILLVGNKIDLRDDRMVLSNLRKVQKAPVLFAETRSMAYSINATAFHECSA 135
BLAST of rho-related gtp-binding protein vs. L. salmonis genes
Match: EMLSAG00000001832 (supercontig:LSalAtl2s:LSalAtl2s1315:101571:120466:-1 gene:EMLSAG00000001832 transcript:EMLSAT00000001832 description:"maker-LSalAtl2s1315-augustus-gene-1.4") HSP 1 Score: 80.1073 bits (196), Expect = 5.680e-19 Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 0 Query: 89 LEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKN 203 + DT G +D +R L+Y DVFLLC+ + P+S N++ KW E++R P+IL G S+LR ++ TMA+L++ +PV+ A + I Y+E+SA N Sbjct: 2 FSIWDTSGFPSYDAIRSLSYQEADVFLLCYKISDPASLYNVKNKWSAEVRRHRPDV---PIILCGXHSELRHDSVTMAQLSKTGRSPVTIEQALAICCEIXAVNYIETSAKENSN 113
BLAST of rho-related gtp-binding protein vs. SwissProt
Match: gi|172046189|sp|Q7L0Q8.1|RHOU_HUMAN (RecName: Full=Rho-related GTP-binding protein RhoU; AltName: Full=CDC42-like GTPase 1; AltName: Full=GTP-binding protein-like 1; AltName: Full=Rho GTPase-like protein ARHU; AltName: Full=Ryu GTPase; AltName: Full=Wnt-1 responsive Cdc42 homolog 1; Short=WRCH-1) HSP 1 Score: 239.965 bits (611), Expect = 1.582e-78 Identity = 117/196 (59.69%), Postives = 144/196 (73.47%), Query Frame = 0 Query: 40 IKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGLGGQRRQERRAAQKQRRREK 235 +KCVL+GDGAVGKTSL++SYTTNGYP EY+PTA D + A+V+VDG PV L++CDT GQD+FD LRPL Y +TD+FLLCFSVV PSSF N+ EKWVPE+ R H P+IL+GTQSDLRE+ + EL + K PV E AA+ A I Y+E SALTQKNLKEVFDAAI+AG+ Q++ K R +K Sbjct: 50 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKA--PIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLCAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRTPDK 242
BLAST of rho-related gtp-binding protein vs. SwissProt
Match: gi|81872485|sp|Q9EQT3.1|RHOU_MOUSE (RecName: Full=Rho-related GTP-binding protein RhoU; AltName: Full=Rho GTPase-like protein ARHU; AltName: Full=Wnt-1 responsive Cdc42 homolog 1; Short=WRCH-1) HSP 1 Score: 237.654 bits (605), Expect = 1.793e-77 Identity = 114/196 (58.16%), Postives = 144/196 (73.47%), Query Frame = 0 Query: 40 IKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGLGGQRRQERRAAQKQRRREK 235 +KCVL+GDGAVGKTSL++SYTTNGYP EY+PTA D + A+V+VDG PV L++CDT GQD+FD LRPL Y +TD+FLLCFSVV P+SF N+ EKWVPE++R + P+IL+GTQSDLRE+ + EL + K PV E AA+ A + Y+E SALTQKNLKEVFDAAI+AG+ Q + K R +K Sbjct: 53 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPTSFQNVGEKWVPEIRRHCPKA---PIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLCAEEVKAVSYIECSALTQKNLKEVFDAAIVAGIQHSDSQLQPKKSKSRTPDK 245
BLAST of rho-related gtp-binding protein vs. SwissProt
Match: gi|172047278|sp|A5D7J5.1|RHOU_BOVIN (RecName: Full=Rho-related GTP-binding protein RhoU) HSP 1 Score: 236.498 bits (602), Expect = 4.166e-77 Identity = 116/196 (59.18%), Postives = 143/196 (72.96%), Query Frame = 0 Query: 40 IKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGLGGQRRQERRAAQKQRRREK 235 +KCVL+GDGAVGKTSL++SYTTNGYP EY+PTA D + A+V+VDG PV L++CDT GQD+FD LRPL Y + D+FLLCFSVV PSSF N+ EKWVPE+ R H P+IL+GTQSDLRE+ + EL + K PV E AA+ A I Y+E SALTQKNLKEVFDAAI+AG+ Q++ K R +K Sbjct: 47 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVKLQLCDTAGQDEFDKLRPLCYTNADIFLLCFSVVGPSSFQNVSEKWVPEI-RCHCPKA--PIILVGTQSDLREDVKVLIELDKCKEKPVPEEAARLCAEEIKATSYIECSALTQKNLKEVFDAAIVAGIQYSDSQQQPKKSKSRTPDK 239
BLAST of rho-related gtp-binding protein vs. SwissProt
Match: gi|81882106|sp|Q9Z1Y0.1|RHOV_RAT (RecName: Full=Rho-related GTP-binding protein RhoV; AltName: Full=Rho family GTPase Chp) HSP 1 Score: 214.927 bits (546), Expect = 6.883e-69 Identity = 112/199 (56.28%), Postives = 139/199 (69.85%), Query Frame = 0 Query: 40 IKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELAR-QKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGLGGQRRQERRAAQKQRRREKRC 237 IKCVL+GDGAVGK+SLI+SYT NGYP Y PTA+DT+ V VDG PV +E+ DT GQ+DFD LR L YP TDVFL CFSVV PSSF NI EKW+PE++ + Q PV+L+GTQ+DLR++ + +L + + PV E AQ LA I YLE SALTQKNLKEVFD+AIL+ + + R E++ K R RC Sbjct: 32 IKCVLVGDGAVGKSSLIVSYTCNGYPSRYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQA---PVLLVGTQADLRDDVNVLIQLDQGGREGPVPEPQAQGLAEKIRACCYLECSALTQKNLKEVFDSAILSAIEHKARLEKKLNAKGVRTLSRC 227
BLAST of rho-related gtp-binding protein vs. SwissProt
Match: gi|121993808|sp|Q29HY3.1|CDC42_DROPS (RecName: Full=Cdc42 homolog; Flags: Precursor) HSP 1 Score: 213.001 bits (541), Expect = 8.129e-69 Identity = 102/180 (56.67%), Postives = 130/180 (72.22%), Query Frame = 0 Query: 37 LRKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGL 216 ++ IKCV++GDGAVGKT L+ISYTTN +P EYVPT D Y V + GEP TL + DT GQ+D+D LRPL+YP TDVFL+CFSVV PSSF N++EKWVPE+ H Q P +L+GTQ DLR+ +T+ +LA+ K P++ +KLA + +Y+E SALTQK LK VFD AILA L Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCQKT--PFLLVGTQIDLRDETSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 177
BLAST of rho-related gtp-binding protein vs. SwissProt
Match: gi|729077|sp|P40793.1|CDC42_DROME (RecName: Full=Cdc42 homolog; Flags: Precursor) HSP 1 Score: 212.616 bits (540), Expect = 1.115e-68 Identity = 102/180 (56.67%), Postives = 130/180 (72.22%), Query Frame = 0 Query: 37 LRKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGL 216 ++ IKCV++GDGAVGKT L+ISYTTN +P EYVPT D Y V + GEP TL + DT GQ+D+D LRPL+YP TDVFL+CFSVV PSSF N++EKWVPE+ H Q P +L+GTQ DLR+ +T+ +LA+ K P++ +KLA + +Y+E SALTQK LK VFD AILA L Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCQKT--PFLLVGTQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 177
BLAST of rho-related gtp-binding protein vs. SwissProt
Match: gi|122068024|sp|Q16YG0.1|CDC42_AEDAE (RecName: Full=Cdc42 homolog; Flags: Precursor) HSP 1 Score: 212.616 bits (540), Expect = 1.299e-68 Identity = 102/180 (56.67%), Postives = 130/180 (72.22%), Query Frame = 0 Query: 37 LRKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGL 216 ++ IKCV++GDGAVGKT L+ISYTTN +P EYVPT D Y V + GEP TL + DT GQ+D+D LRPL+YP TDVFL+CFSVV PSSF N++EKWVPE+ H Q P +L+GTQ DLR+ +T+ +LA+ K P++ +KLA + +Y+E SALTQK LK VFD AILA L Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCQKT--PFLLVGTQIDLRDEQSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 177
BLAST of rho-related gtp-binding protein vs. SwissProt
Match: gi|97535840|sp|Q17031.2|CDC42_ANOGA (RecName: Full=Cdc42 homolog; AltName: Full=25 kDa GTP-binding protein; Flags: Precursor) HSP 1 Score: 212.231 bits (539), Expect = 1.530e-68 Identity = 102/180 (56.67%), Postives = 130/180 (72.22%), Query Frame = 0 Query: 37 LRKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGL 216 ++ IKCV++GDGAVGKT L+ISYTTN +P EYVPT D Y V + GEP TL + DT GQ+D+D LRPL+YP TDVFL+CFSVV PSSF N++EKWVPE+ H Q P +L+GTQ DLR+ +T+ +LA+ K P++ +KLA + +Y+E SALTQK LK VFD AILA L Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCQKT--PFLLVGTQIDLRDENSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 177
BLAST of rho-related gtp-binding protein vs. SwissProt
Match: gi|122145745|sp|Q17QI8.1|RHOV_BOVIN (RecName: Full=Rho-related GTP-binding protein RhoV) HSP 1 Score: 213.772 bits (543), Expect = 1.680e-68 Identity = 116/216 (53.70%), Postives = 145/216 (67.13%), Query Frame = 0 Query: 23 APLAPPGVPQPLPPLRKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELAR-QKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGLGGQRRQERRAAQKQRRREKRC 237 +P PPG P L IKCVL+GDGAVGK+SLI+SYT NGYP Y PTA+DT+ V VDG PV +E+ DT GQ+D D LR L YP TDVFL CFSVV PSSF NI EKW+PE++ + Q PV+L+GTQ+DLR++ + +L + + PV + AQ LA I YLE SALTQKNLKEVFD+AIL+ + + R E++ K R RC Sbjct: 16 SPTPPPGRGSASPEL-GIKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDLDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQA---PVLLVGTQADLRDDVNVLIQLDQGGREGPVPQPQAQGLAEKIRACCYLECSALTQKNLKEVFDSAILSAIEHKARLEKKLNAKGVRTLSRC 227
BLAST of rho-related gtp-binding protein vs. SwissProt
Match: gi|74724228|sp|Q96L33.1|RHOV_HUMAN (RecName: Full=Rho-related GTP-binding protein RhoV; AltName: Full=CDC42-like GTPase 2; AltName: Full=GTP-binding protein-like 2; AltName: Full=Rho GTPase-like protein ARHV; AltName: Full=Wnt-1 responsive Cdc42 homolog 2; Short=WRCH-2) HSP 1 Score: 213.001 bits (541), Expect = 2.992e-68 Identity = 111/199 (55.78%), Postives = 139/199 (69.85%), Query Frame = 0 Query: 40 IKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELAR-QKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGLGGQRRQERRAAQKQRRREKRC 237 IKCVL+GDGAVGK+SLI+SYT NGYP Y PTA+DT+ V VDG PV +E+ DT GQ+DFD LR L YP TDVFL CFSVV PSSF NI EKW+PE++ + Q PV+L+GTQ+DLR++ + +L + + PV + AQ LA I YLE SALTQKNLKEVFD+AIL+ + + R E++ K R RC Sbjct: 32 IKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQA---PVLLVGTQADLRDDVNVLIQLDQGGREGPVPQPQAQGLAEKIRACCYLECSALTQKNLKEVFDSAILSAIEHKARLEKKLNAKGVRTLSRC 227
BLAST of rho-related gtp-binding protein vs. nr
Match: gi|1158935865|ref|XP_020316224.1| (rho-related GTP-binding protein RhoU-like [Oncorhynchus kisutch] >gi|1211303507|ref|XP_021431974.1| rho-related GTP-binding protein RhoU-like [Oncorhynchus mykiss] >gi|1367519166|ref|XP_024243906.1| rho-related GTP-binding protein RhoU-like [Oncorhynchus tshawytscha] >gi|642049728|emb|CDQ92450.1| unnamed protein product [Oncorhynchus mykiss]) HSP 1 Score: 245.743 bits (626), Expect = 2.958e-78 Identity = 119/212 (56.13%), Postives = 151/212 (71.23%), Query Frame = 0 Query: 38 RKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGLGG-----QRRQERRAAQKQRRREKRCLGRGGCL 244 RK+KCVL+GDGAVGKTSLI+SYTTNGYP EYVPTA D + A+V VDG+PV L++CDT GQD+FD LRPL Y + D+FLLCFSVV PSSF N+ EKWVPE++R Q PV+L+GTQSDLRE+ + ELA+ K PV AQ+ A + Y+E S+LTQKNLKEVFDAAI+A + Q R ++R K ++ + C + C+ Sbjct: 44 RKVKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFAAVVAVDGKPVKLQLCDTAGQDEFDKLRPLCYTNADIFLLCFSVVSPSSFQNVTEKWVPEIRRHCPQA---PVVLVGTQSDLREDVKVLIELAKYKERPVEPQEAQQCAEDMRAVSYMECSSLTQKNLKEVFDAAIVASIQHSDSQQQHRLKKRTPDKMKKLSRSCWKKYCCV 252
BLAST of rho-related gtp-binding protein vs. nr
Match: gi|944210886|gb|KQK77671.1| (rho-related GTP-binding protein RhoU-like protein [Amazona aestiva]) HSP 1 Score: 246.514 bits (628), Expect = 2.976e-78 Identity = 121/200 (60.50%), Postives = 148/200 (74.00%), Query Frame = 0 Query: 36 PLRKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGLGGQRRQERRAAQKQRRREK 235 P R IKCVL+GDGAVGKTSL++SYTTNGYP EY+PTA D + A+V+VDG+PV L++CDT GQD+FD LRPL Y +TD+FLLCFSVV PSSF N+ EKWVPE+ R H P+IL+GTQSDLRE+ + EL + K PVSE AA+ A I Y+E SALTQKNLKEVFDAAI+AG+ Q++ K R +K Sbjct: 68 PRRSIKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGKPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPK--APIILVGTQSDLREDVKVLIELDKCKEKPVSEEAAKLCAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKCRTPDK 264
BLAST of rho-related gtp-binding protein vs. nr
Match: gi|1209979470|ref|XP_021382863.1| (rho-related GTP-binding protein RhoU [Lonchura striata domestica] >gi|1208036850|gb|OWK63167.1| Rho-related GTP-binding protein RhoU [Lonchura striata domestica]) HSP 1 Score: 246.514 bits (628), Expect = 2.979e-78 Identity = 121/200 (60.50%), Postives = 148/200 (74.00%), Query Frame = 0 Query: 36 PLRKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGLGGQRRQERRAAQKQRRREK 235 P R IKCVL+GDGAVGKTSL++SYTTNGYP EY+PTA D + A+V+VDG+PV L++CDT GQD+FD LRPL Y +TD+FLLCFSVV PSSF N+ EKWVPE+ R H P+IL+GTQSDLRE+ + EL + K PVSE AA+ A I Y+E SALTQKNLKEVFDAAI+AG+ Q++ K R +K Sbjct: 67 PRRSIKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGKPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPK--APIILVGTQSDLREDVKVLIELDKCKEKPVSEEAAKLCAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKCRTPDK 263
BLAST of rho-related gtp-binding protein vs. nr
Match: gi|542165091|ref|XP_005491157.1| (PREDICTED: rho-related GTP-binding protein RhoU [Zonotrichia albicollis]) HSP 1 Score: 246.128 bits (627), Expect = 4.656e-78 Identity = 121/200 (60.50%), Postives = 148/200 (74.00%), Query Frame = 0 Query: 36 PLRKIKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGLGGQRRQERRAAQKQRRREK 235 P R IKCVL+GDGAVGKTSL++SYTTNGYP EY+PTA D + A+V+VDG+PV L++CDT GQD+FD LRPL Y +TD+FLLCFSVV PSSF N+ EKWVPE+ R H P+IL+GTQSDLRE+ + EL + K PVSE AA+ A I Y+E SALTQKNLKEVFDAAI+AG+ Q++ K R +K Sbjct: 67 PRRSIKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGKPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPK--APIILVGTQSDLREDVKVLIELDKCKEKPVSEEAAKLCAEEIKAVSYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKCRTPDK 263
BLAST of rho-related gtp-binding protein vs. nr
Match: gi|676589274|gb|KFO77067.1| (Rho-related GTP-binding protein RhoU, partial [Cuculus canorus]) HSP 1 Score: 242.662 bits (618), Expect = 9.069e-78 Identity = 118/196 (60.20%), Postives = 146/196 (74.49%), Query Frame = 0 Query: 40 IKCVLLGDGAVGKTSLIISYTTNGYPQEYVPTAIDTYDAIVTVDGEPVTLEMCDTPGQDDFDTLRPLAYPHTDVFLLCFSVVCPSSFVNIREKWVPELKRTHAQGRMPPVILIGTQSDLRENATTMAELARQKAAPVSEAAAQKLAGHIGFERYLESSALTQKNLKEVFDAAILAGLGGQRRQERRAAQKQRRREK 235 IKCVL+GDGAVGKTSL++SYTTNGYP EY+PTA D + A+V+VDG+PV L++CDT GQD+FD LRPL Y +TD+FLLCFSVV PSSF N+ EKWVPE+ R H P+IL+GTQSDLRE+ + EL + K PV+E AA+ A I Y+E SALTQKNLKEVFDAAI+AG+ Q++ K R +K Sbjct: 1 IKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGKPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPK--APIILVGTQSDLREDVKVLIELDKCKEKPVAEEAAKLCAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKCRTPDK 193 The following BLAST results are available for this feature:
BLAST of rho-related gtp-binding protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of rho-related gtp-binding protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of rho-related gtp-binding protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1063_size65393:9809..10549- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold1063_size65393-processed-gene-0.9 ID=snap_masked-scaffold1063_size65393-processed-gene-0.9|Name=rho-related gtp-binding protein|organism=Tigriopus kingsejongensis|type=gene|length=741bp|location=Sequence derived from alignment at scaffold1063_size65393:9809..10549- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'rho-related gtp-binding protein' has the following synonyms
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