h2b3_tigca ame: full, snap_masked-scaffold110_size354795-processed-gene-2.8 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of h2b3_tigca ame: full vs. L. salmonis genes
Match: EMLSAG00000001022 (supercontig:LSalAtl2s:LSalAtl2s116:679040:679821:-1 gene:EMLSAG00000001022 transcript:EMLSAT00000001022 description:"snap-LSalAtl2s116-processed-gene-6.25") HSP 1 Score: 195.667 bits (496), Expect = 1.950e-65 Identity = 98/113 (86.73%), Postives = 104/113 (92.04%), Query Frame = 0
Query: 25 KTAGKAQKNIAK-GDKKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 136
K AGK QK+ K K+S KRKESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA+E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS
Sbjct: 11 KKAGKVQKDAPKTAGXKRSHKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDLFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
BLAST of h2b3_tigca ame: full vs. SwissProt
Match: gi|462238|sp|P35069.2|H2B3_TIGCA (RecName: Full=Histone H2B.3) HSP 1 Score: 222.246 bits (565), Expect = 5.624e-75 Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0
Query: 25 KTAGKAQKNIAKGDKKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 137
K AGKAQKNI+KGDKKK+RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 11 KKAGKAQKNISKGDKKKNRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
BLAST of h2b3_tigca ame: full vs. SwissProt
Match: gi|462237|sp|P35068.2|H2B1_TIGCA (RecName: Full=Histone H2B.1/H2B.2) HSP 1 Score: 221.476 bits (563), Expect = 1.086e-74 Identity = 110/113 (97.35%), Postives = 111/113 (98.23%), Query Frame = 0
Query: 25 KTAGKAQKNIAKGDKKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 137
K AGKAQKNI KGDKKK+RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 11 KKAGKAQKNITKGDKKKNRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
BLAST of h2b3_tigca ame: full vs. SwissProt
Match: gi|150417952|sp|P83863.2|H2B_LITVA (RecName: Full=Histone H2B) HSP 1 Score: 200.29 bits (508), Expect = 1.848e-66 Identity = 100/107 (93.46%), Postives = 103/107 (96.26%), Query Frame = 0
Query: 31 QKNIAKGDKKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 137
QK+I KGDKKK RKESY+IYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIA+EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 13 QKSITKGDKKK---RKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 116
BLAST of h2b3_tigca ame: full vs. SwissProt
Match: gi|110279003|sp|P0C1H5.2|H2B7_CHICK (RecName: Full=Histone H2B 7; AltName: Full=H2B VII) HSP 1 Score: 198.364 bits (503), Expect = 1.397e-65 Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0
Query: 36 KGDKKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 137
KGDKK+ R RKESY+IY+YKVLKQVHPDTGISSKAMSIMNSFVNDIFERIA EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 25 KGDKKRKRARKESYSIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
BLAST of h2b3_tigca ame: full vs. SwissProt
Match: gi|82237670|sp|Q6PC60.3|H2B3_DANRE (RecName: Full=Histone H2B 3) HSP 1 Score: 196.052 bits (497), Expect = 1.133e-64 Identity = 95/102 (93.14%), Postives = 98/102 (96.08%), Query Frame = 0
Query: 36 KGDKKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 137
KGDKK+ + RKESYAIY+YKVLKQVHPDTGISSKAM IMNSFVNDIFERIA EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 25 KGDKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
BLAST of h2b3_tigca ame: full vs. SwissProt
Match: gi|82230729|sp|Q5BJA5.3|H2B1_DANRE (RecName: Full=Histone H2B 1/2) HSP 1 Score: 196.052 bits (497), Expect = 1.211e-64 Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 0
Query: 32 KNIAKGDKKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 137
K KG KK+ R RKESYAIY+YKVLKQVHPDTGISSKAM IMNSFVNDIFERIA EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 19 KTAGKGGKKRKRTRKESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 124
BLAST of h2b3_tigca ame: full vs. SwissProt
Match: gi|122053|sp|P17271.2|H2B_DROHY (RecName: Full=Histone H2B >gi|51701473|sp|Q76FD7.3|H2B_DROSE RecName: Full=Histone H2B) HSP 1 Score: 195.282 bits (495), Expect = 2.392e-64 Identity = 103/107 (96.26%), Postives = 104/107 (97.20%), Query Frame = 0
Query: 31 QKNIAKGDKKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 137
QKNI K DKKK RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIA+EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 17 QKNITKNDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
BLAST of h2b3_tigca ame: full vs. SwissProt
Match: gi|110279002|sp|P0C1H4.2|H2B5_CHICK (RecName: Full=Histone H2B 5; AltName: Full=H2B V) HSP 1 Score: 195.282 bits (495), Expect = 2.753e-64 Identity = 94/102 (92.16%), Postives = 98/102 (96.08%), Query Frame = 0
Query: 36 KGDKKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 137
KGDKK+ + RKESY+IY+YKVLKQVHPDTGISSKAM IMNSFVNDIFERIA EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 25 KGDKKRRKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
BLAST of h2b3_tigca ame: full vs. SwissProt
Match: gi|82117080|sp|Q9PSW9.3|H2B8_CHICK (RecName: Full=Histone H2B 8; AltName: Full=H2B VIII) HSP 1 Score: 194.897 bits (494), Expect = 3.245e-64 Identity = 94/102 (92.16%), Postives = 98/102 (96.08%), Query Frame = 0
Query: 36 KGDKKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 137
KGDKK+ + RKESY+IY+YKVLKQVHPDTGISSKAM IMNSFVNDIFERIA EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 25 KGDKKRRKTRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
BLAST of h2b3_tigca ame: full vs. SwissProt
Match: gi|59799554|sp|P69069.2|H2B_ONCMY (RecName: Full=Histone H2B >gi|59799555|sp|P69070.2|H2B_SALTR RecName: Full=Histone H2B) HSP 1 Score: 194.897 bits (494), Expect = 3.285e-64 Identity = 95/106 (89.62%), Postives = 98/106 (92.45%), Query Frame = 0
Query: 32 KNIAKGDKKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 137
K KG KK+ R RKESYAIY+YKVLKQVHPDTGISSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 19 KTAGKGGKKRKRSRKESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 124
BLAST of h2b3_tigca ame: full vs. nr
Match: gi|38564153|dbj|BAD02422.1| (histone 2B, partial [Drosophila yakuba] >gi|295292767|dbj|BAJ06137.1| histone 2B, partial [Drosophila yakuba]) HSP 1 Score: 206.453 bits (524), Expect = 2.481e-66 Identity = 102/107 (95.33%), Postives = 103/107 (96.26%), Query Frame = 0
Query: 31 QKNIAKGDKKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 137
QKNI K DKK RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIA+EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 17 QKNITKTDKKMKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
BLAST of h2b3_tigca ame: full vs. nr
Match: gi|1229889429|ref|XP_022165088.1| (histone H2B-like [Myzus persicae]) HSP 1 Score: 206.453 bits (524), Expect = 3.120e-66 Identity = 99/113 (87.61%), Postives = 108/113 (95.58%), Query Frame = 0
Query: 25 KTAGKAQKNIAKGDKKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 137
K+ GKAQKNIAK DKK+ KRKESY++YIYKVLKQVHPDTG+SSKAMSIMNSF+ND+FERIA+E+SRL HYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 14 KSFGKAQKNIAKSDKKRKPKRKESYSVYIYKVLKQVHPDTGVSSKAMSIMNSFINDLFERIATESSRLVHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
BLAST of h2b3_tigca ame: full vs. nr
Match: gi|193591751|ref|XP_001950269.1| (PREDICTED: histone H2B-like [Acyrthosiphon pisum] >gi|1229896038|ref|XP_022168618.1| histone H2B-like [Myzus persicae]) HSP 1 Score: 205.682 bits (522), Expect = 5.765e-66 Identity = 100/113 (88.50%), Postives = 107/113 (94.69%), Query Frame = 0
Query: 25 KTAGKAQKNIAKGDKKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 137
K++GKAQKNI K KK+ KRKESY IYIYKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA+E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 14 KSSGKAQKNIVKAGKKRKPKRKESYGIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDLFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
BLAST of h2b3_tigca ame: full vs. nr
Match: gi|1228364684|ref|XP_021943219.1| (histone H2B.3 [Folsomia candida]) HSP 1 Score: 205.682 bits (522), Expect = 6.651e-66 Identity = 106/122 (86.89%), Postives = 110/122 (90.16%), Query Frame = 0
Query: 25 KTAGKAQ--------KNIAKGD-KKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 137
KT GKA KNI+KGD KK+ RKRKESYA+YIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 4 KTGGKASGKKAVSKAKNISKGDGKKRHRKRKESYAVYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125
BLAST of h2b3_tigca ame: full vs. nr
Match: gi|242003202|ref|XP_002422651.1| (histone H2B.3, putative [Pediculus humanus corporis] >gi|242020962|ref|XP_002430916.1| histone H2B.3, putative [Pediculus humanus corporis] >gi|212505452|gb|EEB09913.1| histone H2B.3, putative [Pediculus humanus corporis] >gi|212516134|gb|EEB18178.1| histone H2B.3, putative [Pediculus humanus corporis]) HSP 1 Score: 204.527 bits (519), Expect = 1.271e-65 Identity = 112/128 (87.50%), Postives = 118/128 (92.19%), Query Frame = 0
Query: 10 PPINEVKATFRLLTFKTAGKAQKNIAKGDKKKSRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 137
PP KAT + + K AGKAQKNI+KGDKKK R+RKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIA+EASRL+HYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 2 PP----KATGKAV--KKAGKAQKNISKGDKKKKRRRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLSHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123 The following BLAST results are available for this feature:
BLAST of h2b3_tigca ame: full vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of h2b3_tigca ame: full vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of h2b3_tigca ame: full vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold110_size354795:333163..335252+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold110_size354795-processed-gene-2.8 ID=snap_masked-scaffold110_size354795-processed-gene-2.8|Name=h2b3_tigca ame: full|organism=Tigriopus kingsejongensis|type=gene|length=2090bp|location=Sequence derived from alignment at scaffold110_size354795:333163..335252+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'h2b3_tigca ame: full' has the following synonyms
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