40s ribosomal protein s20- partial, snap_masked-scaffold11_size778918-processed-gene-6.20 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 40s ribosomal protein s20- partial vs. L. salmonis genes
Match: EMLSAG00000007940 (supercontig:LSalAtl2s:LSalAtl2s469:339565:342801:-1 gene:EMLSAG00000007940 transcript:EMLSAT00000007940 description:"maker-LSalAtl2s469-augustus-gene-3.36") HSP 1 Score: 61.6178 bits (148), Expect = 3.979e-13 Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVE 92 E + + MRIHKRVIDL SPSEIVKQITSISIEPGVE Sbjct: 230 GEGSKTWDHFTMRIHKRVIDLHSPSEIVKQITSISIEPGVE 270
BLAST of 40s ribosomal protein s20- partial vs. SwissProt
Match: gi|46397701|sp|P60868.1|RS20_RAT (RecName: Full=40S ribosomal protein S20 >gi|46397703|sp|P60866.1|RS20_HUMAN RecName: Full=40S ribosomal protein S20; AltName: Full=Small ribosomal subunit protein uS10 >gi|46397704|sp|P60867.1|RS20_MOUSE RecName: Full=40S ribosomal protein S20 >gi|75075993|sp|Q4R5D0.1|RS20_MACFA RecName: Full=40S ribosomal protein S20 >gi|108860955|sp|Q3ZBH8.1|RS20_BOVIN RecName: Full=40S ribosomal protein S20) HSP 1 Score: 74.3294 bits (181), Expect = 1.495e-17 Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E + MRIHKR+IDL SPSEIVKQITSISIEPGVEVEVTIADA Sbjct: 71 GEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of 40s ribosomal protein s20- partial vs. SwissProt
Match: gi|75054944|sp|Q5R924.1|RS20_PONAB (RecName: Full=40S ribosomal protein S20) HSP 1 Score: 74.3294 bits (181), Expect = 1.495e-17 Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E + MRIHKR+IDL SPSEIVKQITSISIEPGVEVEVTIADA Sbjct: 71 GEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of 40s ribosomal protein s20- partial vs. SwissProt
Match: gi|133883|sp|P23403.1|RS20_XENLA (RecName: Full=40S ribosomal protein S20; AltName: Full=S22) HSP 1 Score: 74.3294 bits (181), Expect = 1.511e-17 Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E + MRIHKR+IDL SPSEIVKQITSISIEPGVEVEVTIADA Sbjct: 71 GEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of 40s ribosomal protein s20- partial vs. SwissProt
Match: gi|189043876|sp|A1XQU9.1|RS20_PIG (RecName: Full=40S ribosomal protein S20) HSP 1 Score: 69.3218 bits (168), Expect = 1.503e-15 Identity = 36/49 (73.47%), Postives = 38/49 (77.55%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E + MRI KR+IDL SPSEIVKQITSISIEPGVEVEVTIADA Sbjct: 71 GEGSKTWDRFQMRIPKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of 40s ribosomal protein s20- partial vs. SwissProt
Match: gi|2500436|sp|P55828.1|RS20_DROME (RecName: Full=40S ribosomal protein S20) HSP 1 Score: 68.1662 bits (165), Expect = 3.865e-15 Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIAD 99 E + MRIHKR+IDL SPSEIVK+ITSI+IEPGVEVEVTIA+ Sbjct: 73 GEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120
BLAST of 40s ribosomal protein s20- partial vs. SwissProt
Match: gi|6094168|sp|O74893.1|RS20_SCHPO (RecName: Full=40S ribosomal protein S20) HSP 1 Score: 67.3958 bits (163), Expect = 8.392e-15 Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0 Query: 63 MRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIA 98 MRIHKR+IDL SPSEIVKQITSI IEPGVEVEVTIA Sbjct: 82 MRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117
BLAST of 40s ribosomal protein s20- partial vs. SwissProt
Match: gi|109940157|sp|P35686.2|RS20_ORYSJ (RecName: Full=40S ribosomal protein S20) HSP 1 Score: 65.4698 bits (158), Expect = 5.305e-14 Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIAD 99 E T+ MR+HKRVIDL S +++VKQITSI+IEPGVEVEVTI+D Sbjct: 80 GEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127
BLAST of 40s ribosomal protein s20- partial vs. SwissProt
Match: gi|75266342|sp|Q9STY6.1|RS202_ARATH (RecName: Full=40S ribosomal protein S20-2) HSP 1 Score: 63.929 bits (154), Expect = 2.009e-13 Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E T+ +R+HKRVIDL S ++VKQITSI+IEPGVEVEVTIAD+ Sbjct: 74 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
BLAST of 40s ribosomal protein s20- partial vs. SwissProt
Match: gi|21542443|sp|P49200.2|RS201_ARATH (RecName: Full=40S ribosomal protein S20-1) HSP 1 Score: 63.929 bits (154), Expect = 2.057e-13 Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E T+ +R+HKRVIDL S ++VKQITSI+IEPGVEVEVTIAD+ Sbjct: 76 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
BLAST of 40s ribosomal protein s20- partial vs. SwissProt
Match: gi|730687|sp|P38701.3|RS20_YEAST (RecName: Full=40S ribosomal protein S20; AltName: Full=Small ribosomal subunit protein uS10) HSP 1 Score: 56.9954 bits (136), Expect = 9.530e-11 Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 0 Query: 63 MRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIA 98 MRIHKR IDL++P +IVK+IT I+IEPGV+VEV +A Sbjct: 84 MRIHKRYIDLEAPVQIVKRITQITIEPGVDVEVVVA 119
BLAST of 40s ribosomal protein s20- partial vs. nr
Match: gi|1229153703|ref|XP_022089492.1| (40S ribosomal protein S20-like [Acanthaster planci]) HSP 1 Score: 76.6406 bits (187), Expect = 7.499e-16 Identity = 38/49 (77.55%), Postives = 40/49 (81.63%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E + MRIHKR+IDLQSPSEIVKQITSISIEPGVEVEVTIADA Sbjct: 72 GEGSKTWDRYQMRIHKRLIDLQSPSEIVKQITSISIEPGVEVEVTIADA 120
BLAST of 40s ribosomal protein s20- partial vs. nr
Match: gi|1043419588|gb|OCA32219.1| (hypothetical protein XENTR_v90016818mg [Xenopus tropicalis]) HSP 1 Score: 75.0998 bits (183), Expect = 9.621e-16 Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E + MRIHKR+IDL SPSEIVKQITSISIEPGVEVEVTIADA Sbjct: 38 GEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 86
BLAST of 40s ribosomal protein s20- partial vs. nr
Match: gi|719798845|ref|XP_010225190.1| (PREDICTED: 40S ribosomal protein S20-like [Tinamus guttatus]) HSP 1 Score: 74.7146 bits (182), Expect = 1.017e-15 Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E + MRIHKR+IDL SPSEIVKQITSISIEPGVEVEVTIADA Sbjct: 17 GEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 65
BLAST of 40s ribosomal protein s20- partial vs. nr
Match: gi|679199572|gb|KFW88254.1| (40S ribosomal protein S20, partial [Manacus vitellinus] >gi|697424677|gb|KGL85677.1| 40S ribosomal protein S20, partial [Tinamus guttatus]) HSP 1 Score: 74.3294 bits (181), Expect = 1.108e-15 Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E + MRIHKR+IDL SPSEIVKQITSISIEPGVEVEVTIADA Sbjct: 13 GEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 61
BLAST of 40s ribosomal protein s20- partial vs. nr
Match: gi|1227965442|ref|XP_021914058.1| (40S ribosomal protein S20 [Zootermopsis nevadensis]) HSP 1 Score: 75.8702 bits (185), Expect = 1.129e-15 Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E + MRIHKRVIDL SPSEIVKQITSISIEPGVEVEVTIADA Sbjct: 71 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of 40s ribosomal protein s20- partial vs. nr
Match: gi|847134874|ref|XP_012819996.1| (PREDICTED: 40S ribosomal protein S20 isoform X1 [Xenopus tropicalis]) HSP 1 Score: 76.2554 bits (186), Expect = 1.348e-15 Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E + MRIHKR+IDL SPSEIVKQITSISIEPGVEVEVTIADA Sbjct: 82 GEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 130
BLAST of 40s ribosomal protein s20- partial vs. nr
Match: gi|516024005|ref|WP_017454588.1| (30S ribosomal protein S10, partial [Herbaspirillum rubrisubalbicans]) HSP 1 Score: 75.0998 bits (183), Expect = 1.398e-15 Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E + MRIHKR+IDL SPSEIVKQITSISIEPGVEVEVTIADA Sbjct: 41 GEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 89
BLAST of 40s ribosomal protein s20- partial vs. nr
Match: gi|683942406|ref|XP_009099315.1| (PREDICTED: 40S ribosomal protein S20, partial [Serinus canaria]) HSP 1 Score: 75.0998 bits (183), Expect = 1.457e-15 Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E + MRIHKR+IDL SPSEIVKQITSISIEPGVEVEVTIADA Sbjct: 43 GEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 91
BLAST of 40s ribosomal protein s20- partial vs. nr
Match: gi|119569445|gb|EAW49060.1| (hCG2028078 [Homo sapiens]) HSP 1 Score: 74.3294 bits (181), Expect = 1.470e-15 Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E + MRIHKR+IDL SPSEIVKQITSISIEPGVEVEVTIADA Sbjct: 16 GEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 64
BLAST of 40s ribosomal protein s20- partial vs. nr
Match: gi|506965630|gb|AGM32167.1| (eukaryotic translation initiation factor 3 subunit J [Coptotermes formosanus]) HSP 1 Score: 75.8702 bits (185), Expect = 1.514e-15 Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 0 Query: 52 SETTHPQPNIMMRIHKRVIDLQSPSEIVKQITSISIEPGVEVEVTIADA 100 E + MRIHKRVIDL SPSEIVKQITSISIEPGVEVEVTIADA Sbjct: 71 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119 The following BLAST results are available for this feature:
BLAST of 40s ribosomal protein s20- partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of 40s ribosomal protein s20- partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 10
BLAST of 40s ribosomal protein s20- partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold11_size778918:761624..763332+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold11_size778918-processed-gene-6.20 ID=snap_masked-scaffold11_size778918-processed-gene-6.20|Name=40s ribosomal protein s20- partial|organism=Tigriopus kingsejongensis|type=gene|length=1709bp|location=Sequence derived from alignment at scaffold11_size778918:761624..763332+ (Tigriopus kingsejongensis)back to top Synonyms
The feature '40s ribosomal protein s20- partial' has the following synonyms
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