28s ribosomal protein mitochondrial, snap_masked-scaffold1570_size35393-processed-gene-0.8 (gene) Tigriopus kingsejongensis

Overview
Name28s ribosomal protein mitochondrial
Unique Namesnap_masked-scaffold1570_size35393-processed-gene-0.8
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|1325293703|ref|XP_023330325.1| (uncharacterized protein LOC111702785 [Eurytemora affinis])

HSP 1 Score: 134.42 bits (337), Expect = 8.309e-35
Identity = 71/162 (43.83%), Postives = 105/162 (64.81%), Query Frame = 0
Query:    1 MP-YKYIGSKSLYEGRPLFKILCHLKDFGQNRIVYRTFDYYKYPGEIHFYRILKAQPEMDEKTLQGRVLVEKVFRGYRYQEPCNVSEEVYKPDFRLVPKREEAQFCQWDKVVDYDIQKHAPYKPEFIDMPPLLKEVIRRNKLARGESVSED-FRLPAYKIYQ 160
            MP YKY G+ + Y G+PLF IL +LK+FG+ RI+ R     + P    FYR+L AQP MD K+ +GRV+VEKV  G +Y +P ++S     PDF L+P+ +E +FC+W ++ +Y  +K    +P++  MPPLL+ ++ R    RGE +SED F LP +K +Q
Sbjct:    1 MPIYKYFGAAAKYHGKPLFHILSNLKEFGKGRIISRAGFKDEKPS---FYRVLFAQPLMDSKSEEGRVIVEKVRNGVKYTKPVDLSNIAPLPDFILIPRTQEEEFCKWSELREYSPEKDIVVEPKYYTMPPLLRLLMEREMSKRGEDLSEDKFLLPHFKTFQ 159          
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|1022772998|gb|KZS17110.1| (Mitochondrial ribosomal protein S34 [Daphnia magna])

HSP 1 Score: 108.612 bits (270), Expect = 1.094e-25
Identity = 62/138 (44.93%), Postives = 95/138 (68.84%), Query Frame = 0
Query:    1 MPYKYIGSKSLYEGRPLFKILCHLKDFGQNRIVYRTFDYYKYPGEIHFYRILKAQPEMDEKTLQGRVLVEKVFRGYRYQEPCNVSEEVYKPDFRLVPKREEAQFCQWDKVVDYDIQKHAPYKPEFIDMPPLLKEVIRR 138
            MPY YIG ++ Y G+ L++I+ +LK+FG+ R++ R+  + +YP E+ + +I++A+P MDE+ L GRVLVEKVFRG  Y E  ++S+  YK DF+LVP R+E +F     +   +++K     PEFI  PPLLKE+I +
Sbjct:    1 MPYVYIGKRNFYFGKRLWEIVGNLKNFGEGRLLVRS-KFERYP-EVSYVKIIRAEPLMDEENLFGRVLVEKVFRGRHYGE-YDLSKTAYKNDFKLVP-RDEEEFYLSRTMKAEELEKLKKSLPEFIQFPPLLKEMISK 134          
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|1133442574|ref|XP_019877752.1| (PREDICTED: uncharacterized protein LOC109605603 [Aethina tumida])

HSP 1 Score: 105.145 bits (261), Expect = 3.301e-24
Identity = 66/200 (33.00%), Postives = 110/200 (55.00%), Query Frame = 0
Query:    1 MPYKYIGSKSLYEGRPLFKILCHLKDFGQNRIVYRTFDYYKYPGEIHFYRILKAQ-------PEMDEKTLQGRVLVEKVFRGYRYQEPCNVSEEVYKPDFRLVPKREEAQFCQWDKVVDYDIQKHAPYKPEFIDMPPLLKEVIRRNKLARGESVSEDFRLPAYKIYQGDHNITKGEVESNLLSEHISAEYATHKDFDPAL 193
            MPYKYIG      G+ L++I+ +LK+FG  RIV R+  + +YP E  + +I+K +       P +D  T + +V VEKVFRG ++ +P  +    YKPD++L+PK +E  +C+  +V D    K A   P+ +++PP+L E+I+R+ LA+GE ++E   + A  +Y    N +   +  +     +S          P L
Sbjct:    1 MPYKYIGRTHDLVGKSLWEIVGNLKNFGVGRIVTRS-RFERYP-EPTYMKIIKVETLPNPEKPSLDN-TRKVKVWVEKVFRGVKHPKPVLIESASYKPDYKLIPKDQEESYCRLSEVKD----KSAKILPKTLELPPILAELIKRDILAKGEKITEQPTIEA--VYNKSMNNSNYRIAKDGEKPTVSIPVGLGTPVSPGL 191          
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|817074445|ref|XP_012259413.1| (28S ribosomal protein S34, mitochondrial [Athalia rosae])

HSP 1 Score: 101.293 bits (251), Expect = 1.091e-22
Identity = 56/180 (31.11%), Postives = 105/180 (58.33%), Query Frame = 0
Query:    1 MPYKYIGSKSLYEGRPLFKILCHLKDFGQNRIVYRTFDYYKYPGEIHFYRILKAQPEMDEKTLQGRVLVEKVFRGYRYQEPCNVSEEVYKPDFRLVPKREEAQFCQWDKVVDYDIQKHAPYKPEFIDMPPLLKEVIRRNKLARGESVSEDFRLP-AYKIYQGDHNITKGEVESNLLSEHI 179
            MP KYIG  + ++G+ L++IL +LK+ G  RI+ R+  + +YP E  + +ILK +   ++   + +V+ E+ FRG +Y++P  +    YK D++L+PK EE  +C+ +K      Q+  P  P   D PPL K+++ +    +G  ++E+ +L   +K+YQ ++     E E+  ++ H+
Sbjct:    1 MPVKYIGRTTNFKGKSLWEILGNLKNHGVGRIIARSM-FERYP-EPSYIKILKVEALPNDDKRKVKVIAERTFRGVKYEKPITIMSVSYKTDYKLIPKDEETTYCEVEK------QREMPILPRTTDFPPLYKKMLLQTLDQKGTPITEEPKLQLCFKVYQTNYYKVAEEGETPTVTHHL 172          
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|1227974695|ref|XP_021918815.1| (28S ribosomal protein S34, mitochondrial [Zootermopsis nevadensis] >gi|646717014|gb|KDR20025.1| 28S ribosomal protein S34, mitochondrial [Zootermopsis nevadensis])

HSP 1 Score: 98.9821 bits (245), Expect = 8.565e-22
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 0
Query:    1 MPYKYIGSKSLYEGRPLFKILCHLKDFGQNRIVYR-TFDYYKYPGEIHFYRILKAQPEMDEKTLQGRVLVEKVFRGYRYQEPCNVSEEVYKPDFRLVPKREEAQFCQWDKVVDYDIQKHAPYKPEFIDMPPLLKEVIRRNKLARGESVSED 150
            MP KY+G  + ++G+ L++I+ +LK+FG  RIV R TF+ Y  P    + +I K Q   +E   + R+L EKVFRG +Y +   V    YK D+RL+PK EE  +C+ D  V   + +     P  I  PPLL+E+I  ++ A+G  V+++
Sbjct:    1 MPIKYVGRTTSFKGKTLWEIVGNLKNFGVGRIVVRSTFERYPEP---SYLKICKVQALANEDPRKVRILAEKVFRGRKYPKIVEVCSTSYKADYRLLPKDEEQAYCKTDSQV---VLEKVRILPRTIPFPPLLREMILADRRAKGGDVTKE 145          
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|307191187|gb|EFN74884.1| (28S ribosomal protein S34, mitochondrial [Camponotus floridanus])

HSP 1 Score: 97.8265 bits (242), Expect = 2.361e-21
Identity = 61/160 (38.12%), Postives = 92/160 (57.50%), Query Frame = 0
Query:    1 MPYKYIGSKSLYEGRPLFKILCHLKDFGQNRIVYRTFDYYKYPGEIHFYRILKA-------QPEMDEKTLQGRVLVEKVFRGYRYQEPCNVSEEVYKPDFRLVPKREEAQFCQWDKVVDYDIQKHAPYKPEFIDMPPLLKEVIRRNKLARGESVSEDFRL 153
            MP K+IG  + ++G+PL++IL +LKDFG  R+V R   + +YP E  + +ILK        +P  D K +   VLVE+VFRG +  +P  +    YK D+ LVPK +E  + + +K  +  I       P   D+PPLL ++I R   ARG+ VSE+ +L
Sbjct:    1 MPIKFIGRTTDFKGKPLWEILGNLKDFGVGRLVIRN-RFQRYP-EPCYMKILKVAAMPPPDKPHTDRKVI---VLVERVFRGLKSPKPVQMDSATYKADYMLVPKDQEHLYLENNKSPEEKIL------PRTTDLPPLLSQIIARQMKARGDKVSEEPKL 149          
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|91095101|ref|XP_968495.1| (PREDICTED: uncharacterized protein LOC656902 [Tribolium castaneum] >gi|1004402342|gb|KYB28924.1| 28S ribosomal protein S34, mitochondrial-like Protein [Tribolium castaneum])

HSP 1 Score: 97.4413 bits (241), Expect = 2.802e-21
Identity = 59/160 (36.88%), Postives = 94/160 (58.75%), Query Frame = 0
Query:    1 MPYKYIGSKSLYEGRPLFKILCHLKDFGQNRIVYRTFDYYKYPGEIHFYRILKAQP-------EMDEKTLQGRVLVEKVFRGYRYQEPCNVSEEVYKPDFRLVPKREEAQFCQWDKVVDYDIQKHAPYKPEFIDMPPLLKEVIRRNKLARGESVSEDFRL 153
            MPYKYIG  + Y+G+ L++I+ +LK+FG  R+V R+  + +YP E  F++ILK +P        MD++  + RVLVEK FRG  Y +P  +    YK D++L+PK EE ++         + ++        ++ PPL+K+V+ R   A+GE V  D +L
Sbjct:    1 MPYKYIGRTTNYKGKTLWEIIGNLKNFGVGRLVIRS-TFERYP-ETSFFKILKVEPLACPEVQTMDDQR-KVRVLVEKTFRGITYPKPITIESTSYKADYQLIPKDEEHKYTS-----KVEAKRDIKILQRTMEFPPLMKDVLMRENKAKGEDV-HDLKL 151          
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|1080064335|ref|XP_018574294.1| (uncharacterized protein LOC108913255 [Anoplophora glabripennis])

HSP 1 Score: 95.9005 bits (237), Expect = 1.167e-20
Identity = 55/159 (34.59%), Postives = 93/159 (58.49%), Query Frame = 0
Query:    1 MPYKYIGSKSLYEGRPLFKILCHLKDFGQNRIVYRTFDYYKYPGEIHFYRILKAQPEMDEKTL------QGRVLVEKVFRGYRYQEPCNVSEEVYKPDFRLVPKREEAQFCQWDKVVDYDIQKHAPYKPEFIDMPPLLKEVIRRNKLARGESVSEDFRL 153
            MPYKYIG  + ++G+ L++I+ +LK+FG  RI+ R   Y +YP E  +++ILK +   + +T+      + RV VEK FRG  +  P  +    YK D+RL+PK EE +FC+        ++      P++ + PP++KE+I R+  A G   +++ +L
Sbjct:    1 MPYKYIGRTTDFKGKTLWEIVGNLKNFGIGRIITRGM-YERYP-EPSYFKILKVETLPNPETVSFDNVRKVRVWVEKTFRGKVFPSPIIMESATYKADYRLIPKDEEEKFCK------TVVKDETKIFPKYFEFPPVMKELILRDMKAEGSDATDELKL 151          
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|1339040108|ref|XP_023705502.1| (28S ribosomal protein S34, mitochondrial [Cryptotermes secundus])

HSP 1 Score: 95.5153 bits (236), Expect = 1.560e-20
Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = 0
Query:    1 MPYKYIGSKSLYEGRPLFKILCHLKDFGQNRIVYRTFDYYKYPGEIHFYRILKAQPEMDEKTLQGRVLVEKVFRGYRYQEPCNVSEEVYKPDFRLVPKREEAQFCQWDKVVDYDIQKHAPYK-----PEFIDMPPLLKEVIRRNKLARGESVSED 150
            MP KYIG  + ++G+ L++I+ +LK+FG  RIV R+  + +YP E  + +I K +   +E   + RV  EKVFRG +Y +   V    YK D+RL+PK EE ++C+         Q H P +     P  +  PPLL+E+I  ++ A+GE V+++
Sbjct:    1 MPIKYIGRTTSFKGKTLWEIVGNLKNFGVGRIVVRSV-FERYP-EPSYLKICKVEGLANEDPRKVRVWAEKVFRGRKYPKIVEVCSVSYKADYRLIPKDEEEEYCK--------TQSHLPLEKVKILPRTVPFPPLLRELILADRRAKGEDVTKE 145          
BLAST of 28s ribosomal protein mitochondrial vs. nr
Match: gi|1000736838|ref|XP_015590914.1| (PREDICTED: 28S ribosomal protein S34, mitochondrial [Cephus cinctus])

HSP 1 Score: 94.3597 bits (233), Expect = 4.630e-20
Identity = 66/176 (37.50%), Postives = 95/176 (53.98%), Query Frame = 0
Query:    1 MPYKYIGSKSLYEGRPLFKILCHLKDFGQNRIVYRTFDYYKYPGEIHFYRILK--AQPEMDEKTLQGR---VLVEKVFRGYRYQEPCNVSEEVYKPDFRLVPKREEAQFCQWDKVVDYDIQKHAPYKPEFIDMPPLLKEVIRRNKLARGESVSEDFRLPAYKIYQGDHNITKGEVE 171
            MP KYIG K+ ++G+ L++IL +LKDFG  RI+ R   + KYP E  + +I+K  A P      L  R    LV+K FRG   +    +    YK D+ L+PK EE ++CQ  K  +  I       P  +D PPLLKE++ R+  A G  V+E+ RL      Q  +NIT   ++
Sbjct:    1 MPIKYIGRKTDFKGKTLWEILGNLKDFGVGRIIVRN-RFQKYP-EPTYIKIVKVAALPNASGAHLDFRKVAALVQKTFRGITDKNLVQIDRSSYKADYILIPKDEEYKYCQPPKETNPVIL------PRTVDFPPLLKELVLRDMKAAGTPVTEEPRL------QLHYNITNSNIK 162          
The following BLAST results are available for this feature:
BLAST of 28s ribosomal protein mitochondrial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of 28s ribosomal protein mitochondrial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of 28s ribosomal protein mitochondrial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1325293703|ref|XP_023330325.1|8.309e-3543.83uncharacterized protein LOC111702785 [Eurytemora a... [more]
gi|1022772998|gb|KZS17110.1|1.094e-2544.93Mitochondrial ribosomal protein S34 [Daphnia magna... [more]
gi|1133442574|ref|XP_019877752.1|3.301e-2433.00PREDICTED: uncharacterized protein LOC109605603 [A... [more]
gi|817074445|ref|XP_012259413.1|1.091e-2231.1128S ribosomal protein S34, mitochondrial [Athalia ... [more]
gi|1227974695|ref|XP_021918815.1|8.565e-2237.7528S ribosomal protein S34, mitochondrial [Zootermo... [more]
gi|307191187|gb|EFN74884.1|2.361e-2138.1328S ribosomal protein S34, mitochondrial [Camponot... [more]
gi|91095101|ref|XP_968495.1|2.802e-2136.88PREDICTED: uncharacterized protein LOC656902 [Trib... [more]
gi|1080064335|ref|XP_018574294.1|1.167e-2034.59uncharacterized protein LOC108913255 [Anoplophora ... [more]
gi|1339040108|ref|XP_023705502.1|1.560e-2036.7728S ribosomal protein S34, mitochondrial [Cryptote... [more]
gi|1000736838|ref|XP_015590914.1|4.630e-2037.50PREDICTED: 28S ribosomal protein S34, mitochondria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1570_size35393supercontigscaffold1570_size35393:1305..2054 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold1570_size35393-processed-gene-0.8-mRNA-1snap_masked-scaffold1570_size35393-processed-gene-0.8-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1570_size35393:1305..2054-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold1570_size35393-processed-gene-0.8 ID=snap_masked-scaffold1570_size35393-processed-gene-0.8|Name=28s ribosomal protein mitochondrial|organism=Tigriopus kingsejongensis|type=gene|length=750bp|location=Sequence derived from alignment at scaffold1570_size35393:1305..2054- (Tigriopus kingsejongensis)
ATGCCTTACAAATACATTGGGTCGAAATCTCTCTACGAGGGTCGTCCGCT CTTCAAGATCCTCTGTCATCTCAAGGACTTTGGCCAGAATCGTATCGTGT ACCGCACCTTCGACTACTACAAGTATCCCGGCGAGATTCACTTCTATCGT ATCCTCAAGGCTCAGCCAGAAATGGACGAGAAGACTTTGCAAGGACGAGT GCTGGTCGAGAAAGTGTTTCGGGGCTACCGTTATCAGGAGCCCTGCAATG TCTCCGAGGAGGTCTACAAGCCGGACTTTCGCTTGGTGCCCAAGCGGGAG GAGGCGCAGTTCTGTCAGTGGGATAAGGTTGTGGACTACGATATCCAAAA GCACGCCCCCTACAAGCCCGAGTTCATAGACATGCCTCCCTTGTTAAAGG AAGTGATTCGCAGGAATAAGTTGGCACGCGGCGAGAGTGTGAGTGAAGAC TTTCGTTTGCCGGCTTACAAGATCTACCAAGGCGACCACAACATCACGAA GGGCGAAGTCGAATCCAACTTGCTCTCCGAGCACATTAGTGCCGAGTATG CCACTCACAAAGACTTTGATCCCGCTCTGATACCCGGCGAGTGGAACTAT GAGCGCTACAATATGTTTGTGGGCCACAGGAAATGGTCCGGCTATGTGGA GGGCGAGGGTTGGGAAGAGCACTTGGCCAAGGACGAGGCCGAGAAGTCGT ATCTGGCCCAATTGCGCACGGCCGAGAAAATGTCGGAACAAGGTCAATAA
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Synonyms
The feature '28s ribosomal protein mitochondrial' has the following synonyms
Synonym
Tk03606
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